Array 1 1770904-1771602 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCIC01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL03121 2015LSAL03121_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1770904 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 1770965 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 1771026 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 1771087 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 1771148 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 1771209 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 1771270 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 1771331 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 1771392 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 1771453 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 1771514 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1771575 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1788243-1790103 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCIC01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL03121 2015LSAL03121_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1788243 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 1788304 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 1788366 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 1788427 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 1788488 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 1788549 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 1788610 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 1788671 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 1788732 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 1788793 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 1788854 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 1788915 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 1788976 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 1789037 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 1789098 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 1789159 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 1789220 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 1789281 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 1789342 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 1789403 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 1789464 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 1789525 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 1789586 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 1789647 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 1789708 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 1789769 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 1789830 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 1789891 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 1789952 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 1790013 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1790074 29 93.1 0 A...........T................ | A [1790100] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //