Array 1 106597-105792 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPLA01000006.1 Salmonella sp. S088_02709 NODE_6_length_223145_cov_183.28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 106596 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 106535 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 106474 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106413 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106352 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106290 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106187 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106126 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106065 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106004 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 105943 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 105882 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 105821 29 96.6 0 A............................ | A [105794] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 124771-122729 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPLA01000006.1 Salmonella sp. S088_02709 NODE_6_length_223145_cov_183.28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 124770 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 124709 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 124648 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 124587 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 124526 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 124465 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 124404 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 124343 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 124282 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 124221 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 124160 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 124099 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 124038 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 123977 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 123916 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 123855 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 123794 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 123733 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 123672 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 123611 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 123550 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 123489 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 123428 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 123367 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 123306 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 123244 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 123183 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 123122 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 123061 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 123000 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 122939 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 122878 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 122817 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 122756 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //