Array 1 16129-17069 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPGH010000009.1 Clostridium saudiense strain D41t1_190614_B7 NODE_9_length_68889_cov_17.9006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================================================================================================================================== ================== 16129 30 100.0 36 .............................. TGGTGTATGTGCTGCAATATTATCTAATTTAAAATA 16195 30 100.0 36 .............................. TAAGTAAATCTTTAAGTTTTGGAAGTTTCTTCATTC 16261 30 100.0 37 .............................. TCACGTGCTATAGTAAATCGCTCTGTCTTTTTTGGTG 16328 30 100.0 36 .............................. TTTGGTTTAATAAATTTCTATGACACTTTTAAACTT 16394 30 100.0 36 .............................. GCAGCTTTTAATAAGAATCCATTTTTAAATAAATTC 16460 30 100.0 36 .............................. GTTTGAATAGCCATAAACCCACCTCCTAATCATTTA 16526 30 100.0 36 .............................. GAGGACGGTATTGTTGGAAATGAAGAAAGAGTTGAA 16592 30 100.0 37 .............................. GTAAATAAACTTGCTACTGCACCTATAGCACTACCAC 16659 30 100.0 36 .............................. GTTGATACAAATGATAAATTATTTGAAAATAAAGAG 16725 30 100.0 36 .............................. ATATTTTATACAAATAAACCAATTAGGCATAAAAGG 16791 30 100.0 164 .............................. ATTATAATTAGAATGGAAATAAAGAATAATAGAATGTTAATAGATTATTATTTATGAGTCAAAGAGTTAAAAAATAAGAAAATAAAAAATAGAAATTACATTTACATAATATACCTTATGTAGTAAAATATATATTATAAGAGATTTACTTATAATTTTTTTAA 16985 29 90.0 25 ...-.....T..T................. ATGCTGTAAATTATAGTATAAATAT G [17012] Deletion [17040] 17040 30 76.7 0 T.T.......TA.....G........TT.. | ========== ====== ====== ====== ============================== ==================================================================================================================================================================== ================== 13 30 97.4 46 ATAGTAGTAGCTCCATATTGGAATGTAAAT # Left flank : ATTCTAGTGAGGGGGCGAAATGAAAAAATTCTGTTGTATTTTATTATGGTAGGATTACCGATTATAGCTATAACTTGATAATAGTAATTGGATATAAAGTTGTTCTGATTGATAGAAAAAGAAGAATTATTTCTAAAGTATGAGGAAATAGATCTTAAGGTTTGATAAATCTTATTTCAAATAATAACTTTATTTGGTATGTTGTATGTTATAATTATATTAGGTAATAGTAGTTGATAACTTTAAATTTAAACATATTTATAATGTCTGAGATAAATATGTTTAAATTTAATTATTAAAGTAGAAAAAATAAATTAATTTAATTGTCGACCTAACATATGGTTAAAACATAGGGGGGAGACAATGTTATATAAATTCAATATTAGGGGTTGAATAAGTCTAAATATTTTATTTGAAAATATCTATAAAATTTACAAAATATAGAGATAGACAGAAATAAGGGATATATAATAAGAAAATCAGAGTTTAAGAGCGGACGC # Right flank : TATAATTCTATAATTAAAAAATAGTAGATAAAACAATGGGTGAGGTGATAATAAAAATAAAGTATGAATTAACAAAATAAAAGGAGGAATAAAATGAGATTTACTTTAACCTTAGAATTAGAGAAAAGTAGTTTTCCTATTGATTATAGAAGTATAGTCTTAAGTTTTATAAAAAATGCAATATCAAAATGCAATGATGGAAAATATTATGATAGATTTTTTAAGGATACTAATCAAAAGGATTATTGCTTTTCAGTAATACTACCTAAATCAAGATTTACTAAAGATGAAATAAAGTTGGAAAATAATAAGTTAAAAATACTTTTTTCAACAGGAGATGCAGAAAAAACAGGATTAATTTTATTTAATGCTTTTATTTTGCAAAAGAATAAAACGTTTTCACTACCGAACAAAAATTCAATGATATTAAAAAGTATAACAAATCAAAAACAAGATTTAATAGTAAACTCAAGAGCTATATTTAAAACTACAATAGGTAG # Questionable array : NO Score: 5.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-1.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAGTAGTAGCTCCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.40,-2.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 25643-29972 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPGH010000009.1 Clostridium saudiense strain D41t1_190614_B7 NODE_9_length_68889_cov_17.9006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 25643 30 100.0 34 .............................. TCAAACCCCTTAGTACTTGGGAATAATTCTTTTC 25707 30 100.0 37 .............................. CTTGAAAAAGTTACCTCAAATTCCCCATTTCTTCTAT 25774 30 100.0 37 .............................. ACTCTGAATAAGTTTATAGATAGTAATTGCTATAAGA 25841 30 100.0 37 .............................. AATGGAGACATTCACTATAAATTAGATACGGCTGAAA 25908 30 100.0 36 .............................. GAGTGATTTAAGTTTATACTTGAGAGTACAATACTA 25974 30 100.0 36 .............................. CTTGAATTTGTAAAACAATACTTAAGGGTTGACCAC 26040 30 100.0 35 .............................. GAACTTACTTTAAAATTAGATGTTATTCAAACTTA 26105 30 100.0 35 .............................. CATTATTATCATATTCGAACATTGTTGTTCCCTCG 26170 30 100.0 36 .............................. TTGTATATAGATAGGGTAGGGAACACTAAAACGGCT 26236 30 100.0 36 .............................. TTTATTGAAGTAGTAGGCTCAGGATATGCTTACGAC 26302 30 100.0 37 .............................. AGTAAGGGAGCTACTGACGCCTGTAGAAATTTTGAGG 26369 30 100.0 35 .............................. TTATCCGGATTAAAAAGAGTTAATTGGGAAAAGAA 26434 30 100.0 36 .............................. AGAACTTCAGCACTTTTCTTAATTTCTTCTTTTAAT 26500 30 100.0 37 .............................. TATGCTAGGTCTGTATTAGTATCACATCTATTAGGAG 26567 30 100.0 35 .............................. CTAATTTGAGTTACAGTGTAAGTGTTGTTATAAAC 26632 30 100.0 36 .............................. ATACAATCAGCAAAAGCAGTAACACCAAAAATACTC 26698 30 100.0 37 .............................. TCTACAAAGAATGAATTTATTAGTGTTTTAACAAATC 26765 30 100.0 35 .............................. CAGGAAATGACACATTATTTAATTTAATAAATAGC 26830 30 100.0 36 .............................. AATTTTTTATTAAGTTCTTCACATGCAGATTGTCTA 26896 30 100.0 36 .............................. TTATTAACATTTATAAATTGCATTTTTATTGAGTAC 26962 30 100.0 36 .............................. TTCTTTCAATATCATTACTTTTATTTTCATATAATT 27028 30 100.0 36 .............................. CAAGGGGGAAGAGGGTAAAAAGTATTTAGAGTGATG 27094 30 100.0 36 .............................. TAAAAAAAATAAAATAATTGTTGCAATTGTTTCAAA 27160 30 100.0 36 .............................. GCTTTTAATTGAGTTTCTGGCATTTCTTCAGTATTA 27226 30 100.0 35 .............................. TAATTTCATCTGAATTATAGGGGTCGTAACATATC 27291 30 100.0 35 .............................. TTATTAATTTCAGCTACAGTTATTCTTTCCTCTAT 27356 30 100.0 38 .............................. GAGGATTATTTTGATCCTTTTAATACTTTCATTCATAG 27424 30 100.0 35 .............................. ATCTAAGTCCTCTCTATTAGCTTGTTGAACTACTA 27489 30 100.0 37 .............................. ATGGAAATTATAAATAAACAAACAAATACTATAGATG 27556 30 100.0 35 .............................. AATTCATTTATATATGCTTCTAGTAAACTATCATC 27621 30 100.0 37 .............................. TAGCAAGTGAAGAAAAAACATTAGATGGTATTTCTCC 27688 30 100.0 36 .............................. CATATAACTCTATATACTCCATTTGCATTTACTGTA 27754 30 100.0 37 .............................. TAATTTGTTACCTCTTTCACTTAAATATATTTTGTAT 27821 30 100.0 36 .............................. CGCTTATGGAACAAACCATTATAATACAACTAATAG 27887 30 100.0 34 .............................. TCTTATTAAACCATCCCTCATTAATCTACTCTTA 27951 30 100.0 36 .............................. TTACTACACCAAGCGGGATAGACCATTTTAATATAA 28017 30 100.0 36 .............................. GTTTTTGAAGTCCACTTTGCTAAAAATAAGTTCAGT 28083 30 100.0 37 .............................. GCAGACGCTGAGGAGCTAGCTTATAAAGTTATTGAGG 28150 30 100.0 36 .............................. CTACCACAACCTAATAACATTTGTTTGCTATTTTCG 28216 30 100.0 36 .............................. TCTTTAAATTGATTATGCCAATTTACAATATTAGCT 28282 30 100.0 37 .............................. GCAGACGCTGAGGAGCTAGCTTATAAAGTTATTGAGG 28349 30 100.0 37 .............................. ACTTGAAGCCCATCAATTTTATTATTTGCATTATTTG 28416 30 100.0 37 .............................. TCTTTTAAGGTACTCTCTATCTTCCAATCCTTTAACT 28483 30 100.0 36 .............................. GTAGTTTCTTGTGACAAAGAAATCAAGAGATATACT 28549 30 100.0 37 .............................. CAATTAAAGATGATATTGCAGAAGCCAATATATCTGA 28616 30 100.0 36 .............................. ATAGCCTTATTAACTAATCCTATAACTGCATTTAAT 28682 30 100.0 36 .............................. GTAATATTACAAGTGTTTGTTTTAATGAAGTTGAAG 28748 30 100.0 36 .............................. TTTACAAAATCAACTTTAAGATTTTCATGAGATTGG 28814 30 100.0 37 .............................. CCGAATACCTACAGGAACAACGAGGCTATGCAGATGA 28881 30 100.0 36 .............................. GAGGGTGCAAAATATTTGTTTGTATGGTATGGAGCA 28947 30 100.0 37 .............................. TTAGGTACAGAAGATCTATCAACATTACAACTATATG 29014 30 100.0 36 .............................. TGTTTAATGGAAGTATTATAAAAGATGGTAAAATAC 29080 30 100.0 36 .............................. TAATATTTCGCAAACTTAACCACTTCACTTGATCTT 29146 30 100.0 36 .............................. TTGAACTTCCACTTGCTCCTAATAAATACCCTGGTA 29212 30 100.0 37 .............................. CATTATTTATAACTCCCCCATCTGTGAAAGACTTTTT 29279 30 100.0 36 .............................. TAGGTTGTATATCCTGTATTAGTTCTTTTAATCCAT 29345 30 100.0 37 .............................. TAAAGAATGTTTGAGAAGAGGTTTCCTGTACTGGTGC 29412 30 100.0 36 .............................. TTTCTGAATCAGAAATAATAGTAGGGTAAACTTTTA 29478 30 100.0 37 .............................. CCACTTAAATTTGGAATTGGTTTATAGTTATAATTTG 29545 30 100.0 36 .............................. CGGTTGAATATGTCTTTTATTTCCTCTAAATATTCG 29611 30 100.0 36 .............................. GTAATATGTCTTTATTTTATCGCTGTATTGATAATT 29677 30 100.0 36 .............................. ATTGATAAGGGCTTATCAACTAAAAATTTAAAGTTA 29743 30 100.0 36 .............................. CTGGGTCTGATGAAGAATTAAATTTTATGTCTAGAT 29809 30 100.0 37 .............................. GAAGTAATGACAATTAAAGATGTACAGGAATTTCTTA 29876 30 100.0 37 .............................. TTATATACAGAAATAAACTCACTAACTACCTCGGTTA 29943 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ====================================== ================== 66 30 100.0 36 ATTTAAGTAGTACCATATTGGAATGTAAAT # Left flank : AATATGATCCATTTAAAATTTGGTGGTAAGGGGATTGAATAAATGTATGTTATACTAGTTTATGATATAAAAACAGATGATGGTGGTCAAAGGGTGTTAAATAGAACATTTAAAATATGTAAAAAATATTTATGTCATATACAAAACTCTGTTTTTGAAGGTGAGTTATCAGAAGCACAAATTGTCAAACTTAATTATGAATTAAAAAAGGTTGTAAGGGATGATAGAGATTCTATAATTCTATTTAAGAGTAGGAGCGATAGATGGTTGAGCAAGGAGATGTGGGGTAAAGATGATGATAAGACTAGTAATTTTATTTGATTGTCGACCACAGATAGTGTTAAAATATAGGGGGATAGACAAGAGTAGATAAATACTAGGTTATAAGATGAATATTGCTAATAGTTTGAGATTTTAAATATTGTTGATATGAAAATTTATTATAGGTAGACAAAAAGTAATGATATTGAATAGAAAAATCAGCTTATAAGAGTTGTCGG # Right flank : AGAGAGATATGAAAAGAATATAAAAGAAATATTTGTAAATCTAAAAGTTTAAGAAATTTAATAAGATTGATGACTTTTAAAAGTTAATAATATTTCATTATTTGTATAGAGTAAATACAGCGGATAAAGTACATTTAATGAATATAACATCAAAATATATATTTAAAAATACTAAACTAATAAAAGTACTAAAGAAAATTTGAAAATTACCATAAGGTATATTATACTAAAAAATGAAAAACTTAATATGGACAGTTCATTAAGACCATCCTGTCCTTAAACAAAACTAGGCTAAGAAATATTAAATAGATTAAAAAGTTAAGGTTTATTTTATTATGCTAGTTTGTGTAATAAAATAAACCTTTTTTATTTAATAAAATAAGGCCTAAAAATATTAAATAGGAGTGATAAGTATGAATAAGAAAGCAGTAGTTGTATTTAGTGGAGGCCAAGATTCTACAACATGTTTATTTTGGGCCCTTAAAGAATTTGATGAAGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAGTAGTACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //