Array 1 2486-113 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJOT01000080.1 Methanosarcina mazei strain 2.F.T.0.2 scaffold30_1_size41050-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2485 37 100.0 36 ..................................... GTTTCGGAAACAGTCTACTATATCCCCATGAAGCTG 2412 37 100.0 36 ..................................... TGAACGGTTGAAAGCTCTCAAAATTTGCGAGAGAGA 2339 37 100.0 35 ..................................... TAAATTTGCAAGATCGAAAACTGCAATCTATGAAG 2267 37 100.0 35 ..................................... TGTCACATATTATTGTTTTAGTCTGGAATTTTTCA 2195 37 100.0 37 ..................................... TGCTGCCACATATCATCCACGTACCTCCTCTTTTCCT 2121 37 100.0 35 ..................................... TAACTAACGCTAAAACTAAAACTAAATCTAATTAA 2049 37 100.0 37 ..................................... CGGATATCCAGGCACGCGCTGACCTTGTGGAAAATGC 1975 37 100.0 37 ..................................... TTCACTCTCTGATTCTTTATTATCTTTCACACGCTGA 1901 37 100.0 36 ..................................... AAAAGTCAGTCACGGCCAGCCTATGCGCTAAGACTT 1828 37 100.0 35 ..................................... AATGGCTTATTCTGGTTATCAGCCTCCAGCAAACA 1756 37 100.0 35 ..................................... CGAGGTTGCCGGCTGCTGCACTTGGTCTTTGTTGG 1684 37 100.0 36 ..................................... CAGAGGCATTAAGTAGACTGTACGAAGATTTCCACG 1611 37 100.0 36 ..................................... CAATTCCTGAAAATTCACATGCAACTAATACTTTCA 1538 37 100.0 37 ..................................... TCCGGGTATGCCCGCGAGACTCTCCTCATGGTTGCGA 1464 37 100.0 37 ..................................... AAATTAATGTATTCATCAAAAGGCAGGTCACAGATTG 1390 37 100.0 34 ..................................... CGGAGAGCACAATATTCTCAATATGTTAAATTGG 1319 37 100.0 36 ..................................... CCTGCGTTTTTCCTTCCGATATTGATTCTATTATGT 1246 37 100.0 34 ..................................... CACTGAAAATCGCATTGAAAATGATTAATAAAGT 1175 37 100.0 38 ..................................... TTACCATAACAGCAAATTAGAGAATACGAAGCACAATT 1100 37 100.0 37 ..................................... CGGTTTCAGACATCCTCACACTTGCAGCAATCAAAAC 1026 37 100.0 37 ..................................... TTATTATCTGGATGATGGCTGTTTTTGGAGTAGTAGC 952 37 100.0 38 ..................................... CAAGGGCGACAGGGCTTGATAAAGCTTCAGGATTTGAA 877 37 100.0 36 ..................................... TTAATATCATATTCCTTTCAGCATCGGTATCTTTTT 804 37 100.0 34 ..................................... CGGCCATGACCCAAGCAACTCTTAACTGTGCAAA 733 37 100.0 36 ..................................... AATGTTTTGGGTCAATTCCAAGTACTGCGCATAGAT 660 37 100.0 34 ..................................... CCATCGTAGCTCATGACGTGAAGACAGCTTTCAC 589 37 100.0 35 ..................................... GATATCTCCCTTGTTTGGCATTGCACATGGTTCTT 517 37 100.0 37 ..................................... AGAATATTGGCAAGAGCATAACGGCGGGTGAGGCTTC 443 37 100.0 38 ..................................... AAAAGTACATGCCTGATCTAAATCCAGTATTCAAAGAT 368 37 100.0 36 ..................................... ACTGGACTCCTTCAAAAACAAGACAAGCATACTCAA 295 37 100.0 35 ..................................... TGGAGTAAATGTAAACCAGGTGAAAGTTTTGCAAA 223 37 100.0 37 ..................................... CAGCTTTTGAGGGCTCAGCGACAACGACAGCTACCGA 149 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 33 37 100.0 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : CGATGATAATTAGTAACTGCTCAGAGTATAGTTAACGGCGCTCCTATGAGCGCCGCACGAATACCCTCTAAAACAGGTAAACCGTTCTTTTTTCCTGTAGAAATGTACGCCCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 7505-7246 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJOT01000105.1 Methanosarcina mazei strain 2.F.T.0.2 scaffold43_1_size28712-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 7504 38 97.4 37 .T.................................... ACTGAATCCCTGATACTTTTGAGCTCTTTTTTCATGG 7429 38 100.0 34 ...................................... ATCTGTAGTCATTTTAGATATACCTCGCAAACAT 7357 38 100.0 36 ...................................... TTTCATTTTTTGTGACACTTATTGTTATATTGTCAT 7283 37 73.7 0 A.....T.....T..........G.GCCT-.......A | C [7250] ========== ====== ====== ====== ====================================== ===================================== ================== 4 38 92.8 36 TATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : TAAATACGTCTACAAAAATCAGGAATTAGTCGCAAAGAGCCTTGAACTGTTAAGTAAAGAAAATATCCTTGGAGAAAGCAGAATTCAAACACTTGTGGACGAAGTTTATTCAAACGGATATCAGGGTTCTGATCTGGCATCCTTCGAGATGGTAAAAAAGAATTTTTCCACGTATCATAATACAATCGTCCCTTTTATTAACGAAAGAGAAAAAGAAGACGAATTTTATAAACTTTATCAATCTGTTGAAGTTGTTCCAATCCAGTTTAAACTTGAATATCTTGAAGAAATCGAAAACAAAAGGTATTTTGAAGCTATGAAGTATGTTGCCTCTATAAATTTTAATCAGTACAAAAAACTGCAACATAACAACCAAATTCAGATCGATTCTAACATGATATTTGTAAGTGTTGAATACAGTTCTAAATTTGGTCTCCTGTTAGATTCAGATGAATCTATTAAGGGAATTTTTAACAACGACTCATAATAAGTATTCATTA # Right flank : GTGTTGTGACCTGTGTAGATGTCCGACATTAATATTTCGAAACTTCTACAACAGCCAATATATATCCTCAGTGCGGTAAAGAGTCTTAGAGACATCTGGAAGAGAAAAAAGAAGAGCTGGAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAATATCCTGAAAGAAATTGGAAGGTAAAAGACATACAGGAAGAGACCTAAACTGTATTATAGCATAATAAGAAAAGAACTTCTGGCAGGAGGAATAAAAACTATGACAGAAATGACTCTAATCGAAGCACTGAAAAAACTTGCATTAATCACCAAAAAAGGACTGGATGAACTGATTCATATCCCAGGTAATACAAGTGGACCTATTACAATTGGTGAGGCAATTAGAGAAATACAGGATCACGATTCTGACATTTCTGAAACTGATGATTATATAATAGGTAGTGACGGTATTTGGAAAACAGGGGAAGATGGAAGCGAGATAGTATATCAGATTAAAGA # Questionable array : NO Score: 8.50 # Score Detail : 1:0, 2:3, 3:3, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 2 19329-13085 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJOT01000105.1 Methanosarcina mazei strain 2.F.T.0.2 scaffold43_1_size28712-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================================================================== ================== 19328 30 100.0 35 .............................. GCGAGTGCATTATTCACAGCGTTGTAAATGTCCTG 19263 30 100.0 35 .............................. TTATGATTCAGTGCAAGAGCATTTTAGAAGCACAG 19198 30 100.0 34 .............................. CTATTTGCGTAAGCCCATGTTCGATTTGTATCAA 19134 30 100.0 37 .............................. ATTGTGGACCTTAACGTCTGTGTATCCAGCCATGCAC 19067 30 100.0 36 .............................. TACCTTTTGCAGTGTCGGGAGTCAGTGAAATGTTTT 19001 30 100.0 36 .............................. ACAATCCAACCCACGCGATACAATTGACGGCAGCCT 18935 30 100.0 38 .............................. GCCGCAAGAAGTCCTACGGCAGCGACCCCGGTTGCGGA 18867 30 100.0 35 .............................. TTTTGAATCGTGAGATAGTATCAAGTCTCGCACTT 18802 30 100.0 36 .............................. CTAACAGCTACAGAAACGGCGACTGCTGGAAGTTAT 18736 30 100.0 36 .............................. GGTTTCAATTGTTGCGGTTCCGAGATCAAAACCTGC 18670 30 100.0 37 .............................. TGAATTAAAAAGAGTATTAGCCCTGCAGTCAAGAGCC 18603 30 100.0 36 .............................. AAGAGAAAACAACTATACAAATATCAAAAGCACTCC 18537 30 100.0 35 .............................. CTGGCTACCTCGGAACGATCGTCCTTTCTTATCTC 18472 30 100.0 35 .............................. TTTGTTACAATATATGTTATAGTAATATTTAAATA 18407 30 100.0 36 .............................. AAATCAAGAAGAGTATGAAATTTAGCACGATCAATC 18341 30 100.0 35 .............................. GTGACCGGGATTCCATATATGAAAGCCTTTGTATT 18276 30 100.0 36 .............................. CCGTCATAATCAGAATGCCCAGGAGCTAGAATCCTT 18210 30 100.0 36 .............................. AAACATGAGATTATTCAACAGAACAAAACTAAGATA 18144 30 100.0 34 .............................. GTGGCTTCACATCTTGTCACAGATAAGCTTTAAT 18080 30 100.0 35 .............................. CAGGAAAAGCTCATAATAAAAAACTGTAGAAAGAG 18015 30 100.0 38 .............................. TTTTCTTCCATACCTGCGATTGCAACGAGTGTTGAAGC 17947 30 100.0 35 .............................. ATCCTCTGTGCTGTAATTCCCGTACACTCTTTTTC 17882 30 100.0 37 .............................. ATGGTTAAGGTTCCGAAGGCGAAGACCCCAAAAACAA 17815 30 100.0 35 .............................. ATTGTTAGCTGAATTCGCAGACTCCAAAGTCCCGT 17750 30 100.0 38 .............................. TCAAAAGGCCCGCGTGAATACTTCATTTTCGTCTTATG 17682 30 100.0 37 .............................. GCTTGAACGCGCCTGGCACGCTATTGTAATGAGTGTT 17615 30 100.0 36 .............................. ATTGGCTCTTCAGAGATTAATTCAGTGATGGTTTTC 17549 30 100.0 36 .............................. AAGTCACCGCAACATAAGACCCAAACAGCACCCCGT 17483 30 100.0 35 .............................. GATGGATTCTCAGGCACTTGGAGAGGAGTACGGGT 17418 30 100.0 38 .............................. TTCAAAATCAGAAAAACGTCTGTTAATAGTCGATACTT 17350 30 100.0 34 .............................. TAGTTATTCCACGCGCGGGCATCTGAGCCGCCGT 17286 30 100.0 35 .............................. CTTCGTATGCAAATGTTTCACTAGCGTTTAGTTCT 17221 30 100.0 39 .............................. TCGGTTTGAAATCCAATGTCTTGGGGGACATCATACCGC 17152 30 100.0 37 .............................. GTGTCTGTATAGTTTCCGTTGAAATGTCGCCTTCTGC 17085 30 100.0 36 .............................. AAGCCACCCCATGAAAAACCGTGATCTTTTATGAGT 17019 30 100.0 37 .............................. GTACGTTGTCTTACAGTTCGGGCACATTTTAGGGTTA 16952 30 100.0 35 .............................. AGGTATCGAACTTTCGTGTGCCATTGTCCATATCG 16887 30 100.0 37 .............................. CTGAGATCCGTTATAACGTCCTGCCGTACTTTTCAGA 16820 30 100.0 36 .............................. AAGATTGAAGCCATTCAAGTCCCGCCGTCGTATTTC 16754 30 100.0 37 .............................. GTCTATACAGCAGACTGCACCCCACAAATCAAGACAA 16687 30 100.0 37 .............................. GCTGCATATGTGGAGCCTTCAGTTTTGCCCATGCTTA 16620 30 100.0 35 .............................. TTATTAACTGTGCAAGAAATGAGAACATTGAGACA 16555 30 100.0 36 .............................. GATAATCCCAGAAACCCAAGTGATACCGTTTAATCC 16489 30 100.0 35 .............................. ATAAGATGTACGTCATTTGCAAGGGCGGTAACTAC 16424 30 100.0 37 .............................. TAAAAAATATAGCAACATCAGGAGAACTCTACAGAAA 16357 30 100.0 37 .............................. GCAGGACCATCAGGCGCAAATGAAAAATTTCTGACTC 16290 30 100.0 39 .............................. TAGTCTTCAGAATCATCTTCTCCGAAGTTGACTTTCACA 16221 30 100.0 34 .............................. ATACAACAGCCCCTAACGCCCAGATCAAAGGCCC 16157 30 100.0 37 .............................. CTTGCAAAAGAAATAAACAGAATGATTGGAGTAGAAT 16090 30 100.0 35 .............................. TTTCTTCAGGTTCGGATATTACAACCCCCATAAGG 16025 30 100.0 38 .............................. AGCATCGTTTCAACCATACCAGAATGGGAATATGAAAA 15957 30 100.0 35 .............................. GTTATCTGCAGCCCGTGGAGACCATCGTGAGCAAC 15892 30 100.0 35 .............................. ATGATTCTGGAGATATAAAAGAAGTCAACATAAAA 15827 30 100.0 46 .............................. GCGAATGCCGTTTTCAATTATCCTCTTCTGAGAATCAAGTTCTTCG 15751 30 100.0 36 .............................. ATTTATAAAAGTGGACATATATAATATCATAAAATC 15685 30 100.0 35 .............................. GACAAATGACCTTATAAGGAAAAGCCTCTTATCCA 15620 30 100.0 37 .............................. GTCAATACCTCCGCCGGAGGGAGTACCGCAAAGCGGG 15553 30 100.0 36 .............................. GCCGTAATGAAAATGGCTTGCGGGACCGGATACACT 15487 30 100.0 36 .............................. TGCTAAATTAAGAAACGAGCAATCCGGCACGGTAAC 15421 30 100.0 39 .............................. CAGGTAATCTGCACAACCACCCCCAGACCAATTAAGATT 15352 30 100.0 37 .............................. TTCACACCCTCCCTAGAAGGAAAGCAATGACTCCAAG 15285 30 100.0 35 .............................. GTGGAAAAAGCAAAACATCTCGGGAACTCAGTCAT 15220 30 100.0 37 .............................. CTGGTCGACAGGAGCACTCTTGTAAGCCTCTGGAACG 15153 30 100.0 35 .............................. CTCCTCAACGCCTGGTCTATATGCCTCGCAAGCGG 15088 30 100.0 35 .............................. GTGTCTGATAGGCACTCGTTGCGACATCCGAGCCC 15023 30 100.0 38 .............................. CCCTGATGCTTGAAGTCAAAATCCAGGACCACGAGCAG 14955 30 100.0 38 .............................. TTCCAGCCCTCGCCATGCATTGTTGCAGTTTGCAGCCG 14887 30 100.0 36 .............................. GGAGCATGAAGAGAACATCAGGAAGGAGGTCATGGC 14821 30 100.0 34 .............................. GAAGATGCTCCTGAAAAGACCCTTGAAGACAAGA 14757 30 100.0 37 .............................. TAGGAATGGGCGGGAATATCGCCGGAACTGTGCCAGC 14690 30 100.0 35 .............................. GTAATTATCAGCGGGGGTAGACCGTTCTACCCATG 14625 30 100.0 35 .............................. AGGCAAAAACGAAAGCAAAAGAGAAGGAGGACAAG 14560 30 100.0 36 .............................. AAGGATATCCAAAACGACCAGAAGGAGGAGATCTAA 14494 30 100.0 35 .............................. GAATCAAATATCTACCCAGATGAAATAGAAATCGA 14429 30 100.0 36 .............................. CTCAACCACTTCAGCGAAAGCAATTGCAACAAAAAT 14363 30 100.0 35 .............................. TTCGATATTTGCTGTAGAGGTCTGGGTCTTCCAGG 14298 30 100.0 36 .............................. TGATTCTAATTGAGTGTGTGACGGGGGATAATCAAA 14232 30 100.0 36 .............................. TTAATTTCATAGACTCCGGCGTTTAAATGCACGATA 14166 30 100.0 38 .............................. CATACTACGCATCGAACAGGTTTGCATTTCTGAACCGT 14098 30 100.0 35 .............................. TATTTCCTGGGATAGTTGTTGTTATTTTTCCCCTG 14033 30 100.0 35 .............................. CCTTTAGATACCGGAGTAATGTGATCTATCTCAAG 13968 30 100.0 38 .............................. CTTACAAAATCAAATTGATTCTTTGAGGCAGTAACATG 13900 30 100.0 35 .............................. TTCTCTGTAAAAGTCAGATCTGTATCAGTTGAAAC 13835 30 100.0 35 .............................. CTTTAAAGAATTGCATATTTTGACTCCTTTATTTT 13770 30 100.0 36 .............................. GGAATTATAGAAAAGTATACTGCTCCAGTAAGTGTA 13704 30 100.0 36 .............................. GCCCCTATCAGGAGGGTAGTAAATGAAAATAATGAA 13638 30 100.0 35 .............................. ATGTACGACGCGGGCAACTGAATTACTTTAATCTT 13573 30 100.0 36 .............................. AAAGCTCACTATGCAGCTACACCTATCAGATAGAAT 13507 30 100.0 36 .............................. AGTTTAACAGCCTTCCCGCCTCTCGTTTCAAGTAAT 13441 30 100.0 35 .............................. GCCGATGAGGTCCGGACTTTTCATTACTCGATATT 13376 30 100.0 37 .............................. ATTACAATTCCCTGCAGTCCTGCAATGAAATAACCAT 13309 30 100.0 35 .............................. GCATTAGTCATGTTCTTTTCATCATAGACAATCTG 13244 30 100.0 100 .............................. GTACTTAGAAAAACCCTTATGTATAAAATATTTCAAAATTTGGAGAAGGAGAGTCAGTCAAAAAGGAAATTAAAAAGTTATATACTATTAGAAAAATGTA 13114 30 80.0 0 ..A.T.....TT.....A...........A | ========== ====== ====== ====== ============================== ==================================================================================================== ================== 94 30 99.8 37 GTTAAAATCAGACCTTAGAGGGATTGAAAC # Left flank : TATGAACTGGGTCCAAAATAGTGTTTTTGAAGGCGAACTCACAAGAGCCGAATTCGCAAAAGTTAAGTCAAGACTTAAAGAACTCATTGAAGAAAATTCTGATCACATCATTTTCTACAGCTCAAGAGATCGGAAATATCTTGGAATAGAAAATCTCGGAACCCCAAAAGCAGATACAAGCAATATCATTTAATTGCCTCGTCCATGAGTTTCATTACTTAGATCTTCATACTAGAATTAACACTTAATTTATATATTTCTCCCGTCTGCCTTTTTTGCAGTTCCTGTTTCTCCTCTTTTTTCGTGGATCTTTATATATGAACCTCCTGAAGCACGATCCCCGAAATCAGCTCTTAAAACCCTCTTAAAAAAAGAATGCTTTTATATCAACAGTGAACAAATACCATTGAATAAAAACAGTATCATTCCCCCGAATTATTTATCACCCATCTGACAGGATCAGGCATCCAATTTGCCTAAATTCGGGGAAAATTTCCTTG # Right flank : TTTGGAGTTCGTAATTTTTATTTAATAATAAGACCTTCTAGGGATTATTCTTTTTTGCATTTTATGTAGGGAATAATAATTTACCATTTGGAGTTCGTAATAAAAAGATTTATCTATTTGAAATGCTTTATACTCTTTAACTCATTAAGAAAAACGGCAGGATGTAAATACAAAATTCAAATAATAGTCAGGGAACAAGTTATGAATGAAACAAATCCCGTTGAATTGACACTGTTGTTTTTAAGAGTACTTGAATTTGTGCAAAAAAAAGCCTATATTCGAAGAACGGACAAAAAAACAAACCTTGGTAATGAAAAAAAAGTTATCTGGAGGTTAAACATTGCTATATCAATATACAGGTAATCCATTTGTAGATGGGGGAATATGGGCAATTTGTGAATGGGCAAAAAAGAAAAATCCAAAAGAACTTGAGATTGAGGATATAAAGGAAAGTACTTCTGATATAATTCCAATTTATCTGACCGGAGCTTGGGGAAAAA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTTAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 141-3529 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJOT01000131.1 Methanosarcina mazei strain 2.F.T.0.2 scaffold57_1_size22668-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 141 37 97.3 41 .....T............................... CCTGCTTGTAGTTGGCTTTCTGGCACATACACACCCATACA 219 37 97.3 35 .....T............................... ACATGATTAACGAATATTATATTGCAGGTCTTCAG 291 37 97.3 35 .....T............................... CTTTGTTTTATCTGTGTTGCATCTGCAGGCACAGG 363 37 97.3 36 .....T............................... CCATTCTTTTTCCCTTTCAAATCCTCCTTGTCATTG 436 37 97.3 34 .....T............................... TTTTTACATCTTTTAAAGGGATTTGCTTTTTGGG 507 37 97.3 35 .....T............................... TCCATTGTGTTTTCACCTTGTTTCTCAGCGCATTC 579 37 97.3 37 .....T............................... ATCCAGCCTCTAAGTTGAGTATCAAGCTGTTTCTTAA 653 37 97.3 35 .....T............................... TTATTGCGTCCTCTGAACCTGTGAGAACTGTATCA 725 37 97.3 36 .....T............................... TGTTTTTTGAGATAGGTATTCTTTCCAGTATTGCAA 798 37 97.3 36 .....T............................... AAATTTTCACAGTGTTTTTTAATAAATGTCTGACTG 871 37 97.3 37 .....T............................... ATAAACTAAACACAGAAACGATTCTAGTAGACGGAAT 945 37 100.0 35 ..................................... TACAGTGCTTCAATAGGTCCGGTCATTTTCTTATG 1017 37 100.0 34 ..................................... TTCAAGCTCCGCGTTAACGGTTCCGCGTCCTACT 1088 37 100.0 36 ..................................... AATGCAACTTATTATGGGGTATGGTGTGCTCCTGTC 1161 37 100.0 35 ..................................... TCTGAGAGTTTCTCCGGCTTCCGGTACTCTTGTAT 1233 37 100.0 35 ..................................... AACGGTGATAGAAACGGGCGAACTGGCATCCTCAA 1305 37 100.0 35 ..................................... TCGGAATCGGCTTCATTGCCCGGATAAGAGTGAGT 1377 37 100.0 34 ..................................... TTTATAATGTACCAGATCCATTCTGGCTGAATTA 1448 37 100.0 37 ..................................... TTTTAGAAGAAAGGGAGCCACCCTTTCGTACAAAAGT 1522 37 100.0 35 ..................................... CTATGTTGGCCTGCCCATCTACGACTTCGAGGCTC 1594 37 100.0 38 ..................................... TATTCAATACCTAGATTAACTGTATGATCCCTGTGACT 1669 37 100.0 37 ..................................... TCAAGACTGTCAAGCGCATTATTAGCCTCTTTGAATG 1743 37 100.0 33 ..................................... AAAACCTTAAAGACTTAGTAGAAAAGTCAAAAA 1813 37 100.0 35 ..................................... AAAAGCTTGCAGACTTCTCTGCTTCAGACTTAGTT 1885 37 100.0 35 ..................................... GTCATAAATTCCTCTAATTTTTCAGCGTGTTCGAT 1957 37 100.0 37 ..................................... TCAATCAAAAAGGTATCAGGCATTGTTAAAATTACCA 2031 37 100.0 37 ..................................... TAGATACAAAATAGATTTGTGTCTTCGGAGATGAAAA 2105 37 100.0 34 ..................................... TCGAATCGGACGAGAGTTCGTATATCGTGGTAGC 2176 37 100.0 37 ..................................... GTGAGTGTTGGATGCGCATCTGCAAGCATGCCTATAA 2250 37 100.0 38 ..................................... TATCTAACAACGATTGGCACAATCCCTGATGTATATGT 2325 37 100.0 36 ..................................... AAACTAATAAAACATTTGGTATTGAAAAGTCACATG 2398 37 100.0 35 ..................................... TCCACAAAAGATAACCTATTTGCTATTTCTCGTGT 2470 37 100.0 36 ..................................... ACGTACCTGTTGAAGAGGAAGAAGATGATAATAAAG 2543 37 100.0 37 ..................................... GGAATAATAAGCGGAGAGGATATTGTATAGGTTCCTG 2617 37 100.0 36 ..................................... ATTCTTGTGTACATTTCGTTTTTTTAGCCATACTAA 2690 37 100.0 35 ..................................... TCTAAACCATCTTCGGTTATATAGTACTTATTATT 2762 37 100.0 35 ..................................... TTTTCTTGTACAAACCGATGAAGTTCGTTTTGTAG 2834 37 100.0 35 ..................................... TATAATTGTCCTGTTAGTGGGTTAAATCTATCATA 2906 37 100.0 35 ..................................... CCAGATCTACAGGTTCTATACTTTTGTCTCTGCTA 2978 37 100.0 35 ..................................... ATTAAAGTAACGTCACAGGAAAAAAGAAAAGAGTA 3050 37 100.0 35 ..................................... CACAGTCAATGCCTGGTACTGGTGCAGGGTTTATA 3122 37 97.3 35 .....C............................... TTCCAACTCAGGCACTCTTTCAGCCTGAGTAATAG 3194 37 97.3 37 .....C............................... ATAATCTCATTCTCGCGTGTGCCTCTGAGAGCCTCTG 3268 37 97.3 45 .....C............................... AAGTGATGACGGGGCGGTGTTTACTGCCCTAACGGGTGTCACTGC 3350 37 97.3 34 .....C............................... ATATAGTTCAAAATCGAACCGGTTCACTAAACTC 3421 37 97.3 35 .....C............................... TTTTTCGAGAAATTAAGTTAATTTTGCTTAATTAA 3493 37 97.3 0 .....C............................... | ========== ====== ====== ====== ===================================== ============================================= ================== 47 37 99.0 36 ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGAATCTCATCACGTTTCATAAAGCTAAAAAGGAATCATTTTATATCCAATTTTTCCTCGGAACGAGGAAAAATGTGTAGCCTCGTTAAGGCTACCTGAATAGTTACGATAATTATACTATTACGGCAGTTGCAACCTCCA # Right flank : CAAAATCCAATAAGATGGTGAAAAATATGAATAAGTTACTTCAATTTTTTACTTTTTTACCCTCACTGAAACAGAAAACAGTCATAGTATCTTACATTTCAATATTCTTGCTGTTGATTATATTGATCTTAATGGTTGTAACTAAGGTAATATCCTACAATGATGTCAAATATTTCTTTTGGATAACATCAATCTTAATACCATTGTTATTTACACTGTTTATAACGAGAAAGCCTACTGCAACGTCAATACAAGAAAATAAAAAATTGATCCTTTTACTTATTCTGAGTTTTGTTTGTTTAATTGTAACAATATTTTCGGCAATGCTATTAATGAAGGGGCAAACACCATACAATTTCTTAGATAGATAACAAATTTGATTATAGGTACTAATATCTCAGCAATTTTAGAATGTATCTCAACATTGAGATAACTTCTGATGAGCATAAAGAAAATCAAAGCTCCTTAAAAGATTCATATAAGTTTTTAAGATATTGGTT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 2 4074-4833 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJOT01000131.1 Methanosarcina mazei strain 2.F.T.0.2 scaffold57_1_size22668-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 4074 37 83.8 36 .G...A...T.GCT....................... AAAGTTAACCACCCACGCTCATCTACGTTTTCAAGC A [4081] 4148 37 100.0 35 ..................................... CATGCCAATAAATTCCAAATCTCATACTGAGAATT 4220 37 100.0 34 ..................................... TCATTAAGCGATTATTTCTTTTTGAAAATACTTA 4291 37 100.0 35 ..................................... TTTGTTGTAATAAGTGTGGAGCGCTTAAGGAAACA 4363 37 100.0 35 ..................................... TTAGAAAATCGTTGTTGTTGTGACCATTCGTAGCA 4435 37 97.3 36 .....C............................... CGTCTAACAGGCTAGAACCCCATACACCTATTGTGA 4508 37 97.3 35 .....C............................... ATCAAAGCATAGCTGTCCTCACCGTTTGCCTCAAA 4580 37 97.3 34 .....C............................... CAAATGGTTTCGATCAACAACATACAACTTAAGA 4651 37 97.3 36 .....C............................... TTATTTTATGTTTTAAATTCCAGATAACAATTCTGA 4724 37 81.1 34 GG...A...T.GCT....................... TTGAATCGTTCGTTCGGTTTTCTGTGATTTAAAA A [4729] 4796 37 81.1 0 .G...A...T.GCT......................G | A [4803] ========== ====== ====== ====== ===================================== ==================================== ================== 11 37 94.1 35 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TTTTTACTTTTTTACCCTCACTGAAACAGAAAACAGTCATAGTATCTTACATTTCAATATTCTTGCTGTTGATTATATTGATCTTAATGGTTGTAACTAAGGTAATATCCTACAATGATGTCAAATATTTCTTTTGGATAACATCAATCTTAATACCATTGTTATTTACACTGTTTATAACGAGAAAGCCTACTGCAACGTCAATACAAGAAAATAAAAAATTGATCCTTTTACTTATTCTGAGTTTTGTTTGTTTAATTGTAACAATATTTTCGGCAATGCTATTAATGAAGGGGCAAACACCATACAATTTCTTAGATAGATAACAAATTTGATTATAGGTACTAATATCTCAGCAATTTTAGAATGTATCTCAACATTGAGATAACTTCTGATGAGCATAAAGAAAATCAAAGCTCCTTAAAAGATTCATATAAGTTTTTAAGATATTGGTTTCACGGATCAATAATCCAAGCTGTATATAAGTAGCTAATCTCTCA # Right flank : GTTGTTCTTTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTAAGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAGAACCAGACTCTAGCCAAAATACAACTGAAACTGTACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGATCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACTGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAGAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTG # Questionable array : NO Score: 8.57 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //