Array 1 979615-980741 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABIII010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 4142STDY6483238, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 979615 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 979676 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 979737 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 979798 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 979859 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 979920 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 979981 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 980042 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 980103 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 980164 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 980226 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 980287 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 980348 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 980409 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 980470 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 980531 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 980592 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 980653 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 980714 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 996874-997984 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABIII010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 4142STDY6483238, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 996874 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 996935 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 996997 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 997058 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 997119 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 997180 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 997241 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 997302 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 997363 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 997424 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 997485 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 997546 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 997607 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 997669 29 100.0 32 ............................. AATAAGGCGCGGTACCACCCTCGGCTTTAATT 997730 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [997772] 997772 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 997833 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 997894 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 997955 29 100.0 0 ............................. | A [997982] ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //