Array 1 80259-81008 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTWE010000023.1 Acinetobacter baumannii strain KAB13 MRSN613521_contig00023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 80259 30 96.7 30 .............................C ATCAAAGGCTTTGAGGGTAAGCGCCTTTGG 80319 30 96.7 30 .............................G TTGCGCTGTTTTTGAACGTGTAATTGGATA 80379 30 93.3 30 ............................CC AAAGCGGTTAAGCCTCCAAGATTTGCATAC 80439 30 96.7 30 ............................A. GGTAATACAATTCAATCTCACTACAAGAAT 80499 30 96.7 30 ............................A. ATATTTTACGTGTTGATTCAACTACGGGTG 80559 30 100.0 30 .............................. TGGGGTAACTGGTGCCTTTAAGTTGTTTTG 80619 30 100.0 30 .............................. CCAAAGTCTTGTTCAATATCTTGTTGTTGA 80679 30 100.0 30 .............................. GCTCATCAATACAGCTACAAGAAAATTTGT 80739 30 93.3 30 ............................AG CATAAGCATAAAAATTATGTGTGAATATCA 80799 30 93.3 30 ............................AA TATGCAACAATAGGAAATTGCTCAGCATCT 80859 30 93.3 30 ............................AG TTACATCATTGCTTTTAGTCTTTTCTATCT 80919 30 96.7 30 ............................A. GGGCCGCAACCATACGGTCTATGACTTCCA 80979 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ============================== ================== 13 30 96.4 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : ATGATCATAG # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 21-2512 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTWE010000024.1 Acinetobacter baumannii strain KAB13 MRSN613521_contig00024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 21 30 96.7 30 .............................C ATGATCATAGCCCTTATAGATATCGTATTT 81 30 96.7 30 ............................C. GCGAAAGCGGGGTTTTTTATTGCCTGAAAT 141 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 201 30 96.7 30 ............................A. CTGCAAGACCACTGATAGTTGTTGAGAATC 261 30 96.7 30 .............................G TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 321 30 93.3 30 ............................CC AAGCGTGACCAACTCACCAGTTGTCACAGG 381 30 100.0 30 .............................. TTGAAACTTATAGGCTTGGCTTGGGTTATC 441 30 96.7 30 .............................G AAAGGGATTTAAAAGCAGTTACATAAAATT 501 30 96.7 30 .............................G AATTGGATTTCGTAAATCATTGAGCAAGTT 561 30 93.3 30 ............................AG CATCAAGTAGATCAGCAGTTACCTGTTCAG 621 30 100.0 30 .............................. CTGTATTAGTGGCCTTCATGTGCATTAAAA 681 30 96.7 30 ............................A. ACATGCCCACGTTGAAAATCGGGTACCAGT 741 30 96.7 30 ............................G. ATTAAAACTGCTTATAAACTTTCTTAAATC 801 30 100.0 30 .............................. GAAAAAAAGCATCATATTGTTCGGGGCAGG 861 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 921 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 981 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 1041 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 1101 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 1161 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 1221 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 1281 30 96.7 30 .................T............ CTCATCGTGAAGGTTTTGCAAATATGCCTT 1341 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 1401 30 100.0 30 .............................. CAACCTACGCAAGTATTATGGGAACTATTT 1461 30 96.7 31 ............................G. CTTTATCAGTTACGATGGCATGAGTTTTTGT 1522 30 96.7 30 ............................A. AGCACGAGCAAGTTCTTGAGATGCCAAAAA 1582 30 96.7 30 ............................A. ATCTCGCAGATTTGGACAAGGTCACGAATA 1642 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 1702 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 1762 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 1822 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 1882 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 1942 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 2003 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 2063 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 2123 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 2183 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 2243 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 2303 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 2363 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 2423 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 2483 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 42 30 95.2 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : CATACGGTCTATGACTTCCAG # Right flank : TAAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAA # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.30, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //