Array 1 3141296-3143090 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKDS010000004.1 Streptomyces sp. RB110-1 tig00000004_np1212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 3141296 30 96.7 31 .............................C AGATCTTCCCGCAGCGGACGAGACCGATCGT 3141357 30 100.0 31 .............................. TCGTCGACGAGGGCCGACCGGCCGGACTCCA 3141418 30 100.0 31 .............................. TCGTCAACTACGGCACCCGCGGCCTGATCCA 3141479 30 96.7 31 .............................T GAGCCAGCTCAGGCAAGGCGAGGCAACTGTC 3141540 30 96.7 31 .............................A TGGCCCCGGTCCAGCCCGGCGGGTGGCTCGG 3141601 30 96.7 31 .............................T GTGGGACAACGACTACAAGCCGCAGGACGGA 3141662 30 96.7 31 ............................G. TGAGGCCGGGTACCCGGCGACGGTGAGCGCG 3141723 30 100.0 31 .............................. GCGGAAGGCCCGAACGGACTGGACGCCGGGG 3141784 30 96.7 31 .............................A TGCTCGGAGGGACCGGCCGCCTCATCGGGAG 3141845 30 93.3 31 .........T...................T GCTCCATCGACTTGCGGCCCTCGCCGCTGTT 3141906 30 100.0 31 .............................. ACCGGAAGGTCCAGGCCGAGCGGACCTTCGT 3141967 30 100.0 31 .............................. TGATGGCCCCGTTGACTCCGGCCTGGACGAC 3142028 30 96.7 31 .............................A CCCAGCCCGACCCGGCCAAGCACAACGCGTG 3142089 30 96.7 32 .............................T GCGCGGCGTCGGGGGGGGAGGTAGCGCGCGGT 3142151 30 96.7 31 .............................C TCCACTGGAAGCAGTGGGACGACCGAGCCGC 3142212 30 100.0 31 .............................. AAGGGGCGCAAGGGCCACGTGGACCGCTCGG 3142273 30 100.0 31 .............................. CTTCGAGCTTGTAGCCGCGCGGGTTCTTCAT 3142334 30 96.7 31 .............................C CGTTCCGGGAACGGGTGCTGCTGCGGAACCT 3142395 29 90.0 31 .....................-......TC CCATGGGTGCCTCCTGGTTGGGCCGGGCTGT 3142455 30 96.7 31 .............................A GCGGCTTCCCCACGCGCCAGGCCCGGAGCAT 3142516 30 96.7 31 ............A................. GCCCGGCTGGTGTCCAACCACCGCCGGGCCT 3142577 30 96.7 32 .............................C GGTCGGCGGTCAGCTTGTCGAGGGCCTTCTCG 3142639 30 100.0 31 .............................. TCATTCGCTGGGCGACGCAGGCGGACGCTGA 3142700 30 100.0 31 .............................. ACAGCGCCCCCAGCTCAATTGGGCTCTGAGC 3142761 30 96.7 31 .............................C CGACGCCGCCAGCACCCTCCTGGAGCGCACC 3142822 30 96.7 31 .............................C TCACCGAGGCCGCTCACACGAAGTTCGGGTT 3142883 30 93.3 31 ............................TC TCAGCCTCACAGCAAGACGGCACGGCCGGAG G [3142905] 3142945 30 96.7 31 .............................C TGGAGACGCAGTCCGGCGCGCAGGACAAAGC 3143006 29 80.0 27 .....................CCC-C.G.. CACGATCATGCGGCGGATGGCGACTCT 3143062 29 93.3 0 .........................-...A | ========== ====== ====== ====== ============================== ================================ ================== 30 30 96.6 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CTCACCGACAAAATCCCACCCCACATCCCCAGGGCAACAGAAAACCGATCACCAGGCTCCAAGGAACCGACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCGCCTCAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCACCGGCAGCGACCCCACCACCCCCACCCCGGACGAAGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCCACCTCCTCAAACCCGTCTGACCCTCGCCAGAAGACGACCCTTGGGCAGGGCAGGCACACCGCCCCCGGGACCAACCCCACGGAAGGCAGAGCCACACACTTCCACCGAAGCGGGGACGATGAGAGCAGTAGTGGGCAGAATGACATCAGCCGAACCACACACATGACCACTTTGCGTCAGAAGGTGAGATATGCCGGTTTCTCAACAACATGGTGAAAACCGCCTTCCCGTCACCTAAACCCCCAGGTCACGAAGG # Right flank : ACACACCATCGCTTACGTGAGATCACGGCCTCGAAGCCTGGAAGGGCGGAACCTACGGCCCCTGCTCCGGCGGGTTCCGTGACCATTCGAGCCCCTGGCCGCCGACCCCGATCCGGCGCTCCGGAAGCCCGTAGATCCCGAAAGGCGGGAACAGGTCGACGCGGCGCGGGCAGCCGCTCTCCGCGCACGCCCGACACAACCGATCCCGGCCCCGATCGGTGTGCCGCACGGCAGTCGCCGGAGCGCGCCAACATGCCTCGCACGTGCGGACATCCGTGGTCGACAGATCGGGGCTCATCCAGCACCCTCAAGCGCAGTGGCCCCCTCGTGACACGGACAGGCGCACGTCGGCAGACGGCACAGGGCGTGCACACCGGCCAGGTCTGTCACCAACGCGCTGCGACACACCACGCTGCACGGCCCGTCCGCACCGGCCGTCAACGCGTCCAGCGCTACAACCGGCTCCCCGGCCTCATCGCCCCCGGTGATCGGATCACCTC # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3146376-3147199 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKDS010000004.1 Streptomyces sp. RB110-1 tig00000004_np1212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3146376 30 100.0 31 .............................. TCAGTGGAATGCCGGCCCCCTGGCCATGCTC 3146437 30 100.0 31 .............................. CCGCCGCCGCCATGACGCTCTGGAAGCAGAG 3146498 30 96.7 31 ............................A. GAGCGCGGCCCAGCCGATCGCGGGAACCACG 3146559 30 96.7 31 .............................A GCGCTCGTACGAGGACCGCGAAGGCGTCAAG 3146620 30 100.0 31 .............................. ACCACGCCCCCGTCGCGCTCACCAGCTCGCC 3146681 30 96.7 31 .............................C GGCGGATCGAGGCAAGTTGTAGCAGCGCTTA 3146742 30 96.7 31 ............................T. ACGCCGGGGACGAGCCCCGAAGCGCCGGGCA 3146803 30 93.3 31 ............................GC TGGTGGCGTCGGCGGTGAAGGCGTTGCCAAA 3146864 30 100.0 31 .............................. CGGTGACCGCCGACAAGATCGCCGCCGACGC 3146925 30 100.0 31 .............................. CCCTACTGCGCCGGCTGTTGCGCCGCATCGT 3146986 30 96.7 31 .............................T TGGTACGCGTCCCACTGCCAGGGGAAGTGTC 3147047 30 100.0 31 .............................. CCGTACGCGCCTTCCAGCGCGCACAGGGGTG 3147108 30 90.0 31 ............AT...........C.... GCGGCAGTGATCGGCGTACCTGTACGACGCT 3147169 30 80.0 0 ...........C.GT......C....TT.. | G [3147182] ========== ====== ====== ====== ============================== =============================== ================== 14 30 96.2 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : GCGTCGGACGCGGGTTGAGCTTCGACCGTGGCGCCGGGAGGACTTCGTCGCCGACCTGGACGATCACTTGATGGACGCCCTCGGGGCCTGACGACGGGCTTCGCTCACTGCTTCCTGGCCACTCCATGGCAGGGAATGACGAGTTCCTTGAGCCGCCGAACCTCCGGTCAGGAGTCACGTGCACACGGGCCCTGGGGGCGAGGGCCGAGTCGGCCGGCTCAAGGCACCGGTAGCGGTCGTCGTGGTCGAAGACCTCACCGACGTCGGCCACAAACGTGTTCGCACAGCGAGCCCAGAACACAACGCCCCTGGCCGACACCTGCGGAGGGCCGGGCCGCTTCACTTCCACCGAAGCCGGGCCGACGAGATCGACGGCGGGCAGAATGACATCAGCCAAGCCATGCACATAAACCCTTTGCGGCAGAAGGTTGGATATGCCGGTTTCTCAAGAAGTGAGTAAAAACCGCCACCCCGCCACCTAAACCCCCAGGTCACGAAGG # Right flank : GCGGGTGTTCGCGGTACCGCTTCGGCCGCCCCGTGTCCCGTAGACGCCCAGGGGCACTCGGCGCGACACCGGGCCGCCCTCCCAGTGCCCTACGGAGAGGCTCCCCGACCACTCAGCCCAGCCCCTCCTCCACCAGGGTCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGTCCAGGAGTTCGACCGCGATGCGGTGGGTCTCGCGGCCCACCCGCGCTTCCAGTTCCGTGACGCGCGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGCGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAGGGCCGCGACCACCTCCGCGCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCCGCAACGTACTCCACCGCC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4297188-4294962 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKDS010000004.1 Streptomyces sp. RB110-1 tig00000004_np1212, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4297187 30 93.3 31 ............................TC ACCGAGTACGCCGCCCGCACCCTCACCCGTG 4297126 30 96.7 31 .............................T CGACGCTGACGTCGTCGAGGTCGGCGGACAC 4297065 30 96.7 31 .............................C ACACGACCGCGTGAATGTGCGTGTGCCAGGC 4297004 30 96.7 31 .............................A CCAATCAGCAGGATGGTATTGCCATCGCAAG 4296943 30 93.3 31 ............................TC GCGCTCCCGATCGACAGTGCCTTGTCGAGAT 4296882 30 96.7 31 .............................A TCGGGCACAGTGCGCTCAAGGGCGACTGGGT 4296821 30 93.3 31 ...T.........................T CGGTGCCCCCGGCCGGCGCCGAACAGCCGGA 4296760 30 96.7 31 .............................C CCGTCGTACGGCCCTGACGTGCCGGGCCGTA 4296699 30 96.7 31 .............................T GCGGGATCGGGATACTCTGGTTGGACACGAT 4296638 30 96.7 31 .............................T CGTCGAGCACCTGCCGCAGCGGAACGAGCGG 4296577 30 96.7 31 .................A............ TGCTGAGATCGATCCCGGTCGCCGGGTCCCG 4296516 30 100.0 31 .............................. GGAACGGGAGGGTCGGCGACCGCGACCGGAT 4296455 30 96.7 31 .............................A TGCCGACGGTGTCGGAGTTCTGGATGAGGGC 4296394 30 93.3 31 ..................T..........C GCATGCCTATGCCCTCGGTCCTGCAAGGTGG 4296333 30 96.7 31 .............................A TGTCGTAGGTGACGCCGTCCCGGCTGACGGA 4296272 30 90.0 31 .G.........A.................C CCGGGTAGGCGAGCAGCGATGAGATGACGAG 4296211 30 96.7 31 .............................A CCATCCTGAGTGCGTCCGGTCTGCGGATGCT 4296150 30 96.7 31 .............................C CGCCCTCGCAGTTCGTCACCGGGTCCACCCA 4296089 30 93.3 31 ............................TT CCTCGCCCTCCTCGATCGGGTTCAGGCCCAT 4296028 30 100.0 31 .............................. GGCTGACCGGGTCGGCGATCATCTGCGCGAC 4295967 30 100.0 31 .............................. CCAACGCGGCGAGCACGTACAAGGTGCGCAT 4295906 30 96.7 31 .............................C CGCCGAGCTCACCCCGCAGCGACTCGACGTC 4295845 30 100.0 31 .............................. GCAGGCGGCCCACCAGGCGCAGGCCCGCCTC 4295784 30 100.0 31 .............................. TGATGATCACCGGCATCCCCGGCTCGGGGAA 4295723 30 100.0 31 .............................. ACCTCCCGACCGCGGAGGAGTACGACCCGGT 4295662 30 100.0 31 .............................. TGCCGGTGGCCTTCTTCCTGCCGGTGGGGGC 4295601 30 96.7 31 .............................A CGGACTTGGCCCCGGCTTGCAGCCACTCCAG 4295540 30 93.3 31 ........A....................A TGCCGTCGTCGCCGCTCTGGTCGGCGGCCAG 4295479 30 96.7 31 ............................G. CGTCGAGGCCGTACGCGTCGCGGACCAGGCG 4295418 30 93.3 31 .......................A.....A GGTCTTACAGGGGCCCGTCTGCGGGTCCGTG 4295357 30 96.7 31 .............................C GGTGCCAGGCCGGGGCGGCCAGCCCCGCAAA 4295296 30 100.0 31 .............................. AGCTTGCGCGCGGCGACCTCAAGAAGGGCCG 4295235 30 100.0 31 .............................. GCGTCATGCGCGACGCGATGCCGGTCAGCAA 4295174 30 93.3 31 ............................GT CGACGAGCTCAGGGCCGAGCCATTTCAGGAG 4295113 30 100.0 31 .............................. GTCGTCCGGGCCGACCCTCAGGCCGGCCCGG 4295052 30 96.7 31 .............................A CCGACCGGGGCCGCGCCAGACACCTGCCTCA 4294991 30 93.3 0 .........................C...T | ========== ====== ====== ====== ============================== =============================== ================== 37 30 96.6 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : ACCGACAAAATCCCACCCCACATCCCCAGGGCGACAGAAGGCCGATCACCAGGCTCCAAGGAACCGACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCACCACAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCCACGGCGGCGACCCCACCACCCCCACCCCGGACGAGATCGCCTCCGTCAAAGCCCACGTCGCCAACCTCCGCAACCTCCTCAAACCCGCCTAACCCCCAGGCGATGGGTCGCTGTTGGGCAGGACGGCCACACCGCACCCCAGGGCCGACTCCACGGAAGGCAGAGCCACGCCCCTTCCACCGAAGCCGGGACAATGAGACCAGTGGTGCGCAGAATGGCATCAGCCGAACCACACACGTGACCACTTTGCGCCAGAAGGTGAGATATGCCGGTTTCTCAACAACATGGCAAAACCCGCCTCCCCGCCGCCTAAACCCCCAGGTCACAAAGG # Right flank : GCGCCCCCGAGTGAAGTGGCAGGTCACACCCCGCGCGGGTACTCCCCCTTCCCCGTCCCGATGATCCCGCCCGGGTCCCGCAACCACACCTGCTGACCCCGGTCAGTCACCGTCAGCCCGAACTCCTCCACACCAGGGCGACCGGCCGACTCGTACTCCCACCAGGTCTGCTCGATCTCTTCCCACAGCAGCCCGATCCCGTACTGCCACACCTCCTCTCCCGAAGCCGTCGAAGCGCCACCGACCTCACTCGTCACCCACACGCGCACCCCGCCACCGGCGACACTCTGGTGAATCATCCGCACACCGGGCAGTCGCGCCCCCGCGAACAACGCGAACCCGAGGTCCAGCAACCGGGCCGGGTCCAGACCGGCCGCCCGCGCTCGCCCCCTCCCCCGTACCTCATGCAGATCGGGCACGCGGTGCGAGCGCATCGGCATGTACGTGGCCCCGCCGCAGAACGGCCCGACCGCGCTGCCGTCCCCCTGAACCCGTAGCCG # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 4327799-4327158 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKDS010000004.1 Streptomyces sp. RB110-1 tig00000004_np1212, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 4327798 30 96.7 31 .............................T GACCCGGCCACGGTGGACATGACGGCCCCGG 4327737 30 96.7 31 .............................C CGCCGATGGGTGCAGCAACTCGAAAGCGGTG 4327676 30 100.0 31 .............................. GGCGGGCGCCGGCATCGAGGGCAAGGTCGAC 4327615 30 96.7 32 .............................T CGAAGGTGCGGCACATCGAGGCGGGTCTCGGT 4327553 30 96.7 31 .............................A GCCCAGAGCGGCAGCCAATTGAGCTTGCGTC 4327492 30 100.0 31 .............................. TCAATCGTCCGAGCTGTTCCATCAAGGTTCA 4327431 30 96.7 31 .............................C AGCACGCCCTGGCGGTGGCCCGGCAGCTCCT 4327370 30 96.7 31 .............................T TCGAGTGGCCGGTGTTCACGTGCCCGACCGG 4327309 30 100.0 31 .............................. GGTGCCGCGTGAGACACAAGGTGTGCGCACT 4327248 30 100.0 31 .............................. CCTCGGTCGCGTTCTTCGCCAGCCCGGTCTT 4327187 30 93.3 0 ..........................T..T | ========== ====== ====== ====== ============================== ================================ ================== 11 30 97.6 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : GACAAGATCCCGCCCTGCCTCCCCACAACGGCAGGAGTCGACTCGCCGGGAGCCAAGGAACCCGCCCACGAAACCCTCGTCGAGTGCACCAACTGCCGCCGCCCAGGCCCACCGGAAGCCCTTCCTGACGGCCTCTGCCGCCCCTGTCACCGCGCCCACACCACGGGCGGCAACGACACTGCCGCACCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAGCCCGTCTGACTCCCCAACCGCCGCACCCCTCGTAGGGCAGGTCGGGCACACCGCACCCCGGGGCCCACACCTACGAAAGACAGAGCCGTACCTCTTGCACCGAAGCCGGGCCGCCCAGTCTGGCGGCGGCCAGAATGGCATCAGCCGAACCACACGCATGACCCCTTTGTGGGGAAAGGCAAGATATGCCGGTTTCTCAACAACACCGTAAAAGCCGCCTTCCCACCACCTAAACCCCCAGGTCACGAAGG # Right flank : TGTCTTCAAATCGAGGAGCCCGCGAACCGACCAACGCAGTCGGGGCAGTGCGTGCAGTCGCCCTACCTGCTTCGATAAGGAAATCTACGTACGCCGCAACGAAGTTGAACCGACGGTCAACGACCTCAACTGGCTCCGCTCGGTGGCCACGCGATACGACTAGCGCGCCCACGTCTTAGAAGGAACCTCGCCCGCCGCAACGATCTGGCTCGGACTTCGGGGATAGATCCATTGTCGCGCTCCGCGAAGGCGCTTGTCACCGTTCTCCGGAATGACCTTTACGCCCGTTATGCACCCGTAGGGTTACGGGGATCGAGCACGCCATACCAACCTGATGTGGAGTCGAGAGTGGTACATGACGTTGCCGCACTGGCGAAGGAACTCACCGCCATGGCTGCGGCCGATCAACAGTCCTCAGCCCGCGCCAACAGCGATGATCCCGCCGAGCAGTTGGTATGGCGTCGGCTTACCGCGCAGCACGGTGACCGGCTCGGTCAGAT # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4336897-4335893 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKDS010000004.1 Streptomyces sp. RB110-1 tig00000004_np1212, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 4336896 30 93.3 31 ............................GG AGCGGCGCGGCGGACCGATGCGGCGTGGCCG 4336835 30 96.7 31 .............................G CCCTTGGACGCCGCTGGGTGGACTACGGCGA 4336774 30 96.7 31 .............................A GCTCACCACCGTGGCCGGGTTCCAGCTCACC 4336713 30 96.7 31 .............................A GCTCACCACCGTGGCCGGGTTCCAGCTCACC 4336652 30 100.0 31 .............................. CGACGAGGACGGCTACCGCGACGACGCCACC 4336591 30 96.7 32 ............................A. CCGCCGCTCGCTCGGCCGCGATGTACTGCGGG 4336529 30 100.0 31 .............................. CGGACAATCCGAATCACTGGGCGCGCAAGGA 4336468 30 96.7 31 .............................A AGTGCAGGAAAGCCCCGCCGGACCAAAAGGC 4336407 30 96.7 31 .............................A TGGTGCCGATCGCCGCCGTCACCGCAGCCAG 4336346 30 96.7 31 .............................G TCGGCCCGCTCGACACGGCCCACATCGACCG 4336285 30 100.0 31 .............................. GTCCGCGCCGCCTACAAGACCGGCGGCAGCA 4336224 30 93.3 31 .........C...................G AGATCGGGCGGGAAGCGCCGCCGGATGTCGA 4336163 30 100.0 31 .............................. GGGGGCGGGTCTTGGACGCCGGATTCCCCGC 4336102 30 96.7 31 .............................G GGGCCTGCGCGCTCCCGTTGCCGCTCACGTT 4336041 30 93.3 30 ............................GG CAGCATCACGGATGTGGCGACCCGCCCGTG 4335981 28 90.0 31 .............--..............A GGTCCTGCCAGTCGGTGAGGAGCCGGACTTG 4335922 30 73.3 0 .....................TCAACAG.G | ========== ====== ====== ====== ============================== ================================ ================== 17 30 95.1 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : CTACGGGGCGCCCGCAGTTGAAGGCAGGGAGTGGTGGCGCGAGAGCCTGGATACGCCGCCGGAAAGGTCTCGGACCTTCTCCTACTCCGAACTGGCCGTCCACCCCGAGAAGCGGAAGCAGGGGCTGGCGGATGCCCTCTCACGGGCTCTCCTGGCCGGGCGGACCGAAGATCTCGCAGTCCTCCTGGTGGACGTCAAGCACCCCCGCGTGCAGTCCCTGTACGAGGGCTGGGGCTTCCGGAAGGTCGGACAGCGCCAGCCCTTCCCGGACTCTCCGGTCTACGCCGTGATGCTGGCCGACCTCCCGCTTGACGAGAGCCACGGAAGGTAGAGCCGCACCTCTTCCATCGAAACCGGGCCGATGAGACCGGATGGTGAGCAGAATGGCATCAGCCGAACCACACCTGTGGCTACTTTGCCCCGGAGAGCGAGATATACCGGTTTCTCAACAAGTTAGCAAAAACCGCCTCCCCGCCACCTAAACCCGCAGGTCACGAACA # Right flank : CGAATGGTCGCGCGGCTCGCACCGATGCCTGGACGAGGAACAGCCCAACCGGTCAGTACGTTTGGTCGTCTCCATCGACATCGTCATCCCTTGCGCGTTGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGTGATGTGGAAGCTGTGGCTGCCGGGGTGGCCCTCGTACAGTCCGCACCACTGCCGGTAGTTCTCGCGGAGGTGGTGGATGCGGTAAGGGCACAGGGCGAGGAGGACGAGCCGGTGGTGGACACGGTGGCCCCCTGTGCTCGTCGTCCACAGGAACCACAGGCTCGCGGGCGGTTCCGTCTCGGCGGTCCACAGCCGCGCCGCGTGCTCGGTGGCCTCGTCATGCTCGCCCAACTCGCACAGCACATACGGCTTGTCGGCCAAGAGGTCTTCCGCATCGTCGGGGCCGTCGTCCATGGAAAGCAGGGCGGGGAATGCTTCGTCGTGCGGAAGACTGGTGATGGCGGTGCATTGC # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 4341215-4340392 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKDS010000004.1 Streptomyces sp. RB110-1 tig00000004_np1212, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 4341214 30 100.0 31 .............................. GGTTCATGGACAGGGGCGCGGGGTGCTTGAT 4341153 30 96.7 31 .............................T CCCCCGAAGCTGTGGCGTGGCTCAACACCCG 4341092 30 96.7 31 .............................C GCCGCTGCGCCCACCCGGGCCTCGCAGCCAA 4341031 30 96.7 31 .............................A CCCGGCGCGCGGCCGACCGCCGCAAGGCCGA 4340970 30 96.7 31 .............................C GCGCTCGCATTGCGTCGATGAGCTTTCCCAT 4340909 30 96.7 31 .............................T CGACGGCGGCCTCGGCGCGGCCACGGTCGAC 4340848 30 96.7 32 .............................C CGGTCACCGTCATCCGCTCCACCGGGGAGTCG 4340786 30 96.7 31 .C............................ CGAACGCGATCACCGTCCCGCCCTCCGAGCG 4340725 30 100.0 31 .............................. CCGAGGGCGTGGCCACCGCGGCCATCACCCC 4340664 30 100.0 31 .............................. CCGAGGGCGTGGCCACCGCGGCCATCACCCC 4340603 30 100.0 31 .............................. CGTACGCCTGGCTCCAGCTGGAGGGCTACGT 4340542 28 86.7 31 ...........--...........A....A TCCCAACTGCCGTCACAGCGTAAGCAGTTAC 4340483 30 90.0 32 ...........A.............C...T CGCGGCGGATGACCTGGCCCTCGGGATCGAGG 4340421 30 80.0 0 ...................T...A.CAG.A | ========== ====== ====== ====== ============================== ================================ ================== 14 30 95.3 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : AGCGCCTCCAACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGGACCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCACCGGCTCGATGCCCGACCTCTGAAAACCAACCGAAGCCGGGCGACATACACCGCAGGTTGCAACCACCGACCTGCGCAAGCACCTCGGGAGACCGCCATACCGGCCCCGAAGGAATAGCCGCGCCCCAAGCGCACACCATCAGCCTCCGCCACCCCCTCAACCCGTCGAACCCCAACCACGAAGCCCCTCCCGAAACGGGGTAGGCACACCGCACACCGGGGCCCAAAGCCCACGAAGGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGACCGGGTGGCGGGCAGAATGGCATCAGCCGAACCACACCTGTGACCATTTTGCCCTGGAGAGCGAGATATGCCAGTTTCTCAACAAGTTAGCAAAAACCGCCTCCCCGCCACCTAAACCCGCAGGTCATGAACA # Right flank : CGAATGGTCGCGCGGCCCGCACCGTAGCCCGGACAAGAAACAGCCCTACAGGTCACGACGTTAGGTCGTCTCCCTCAACGTCGCTTCCCCATGCGCGTTGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGTGATGTGGAAGCTGTGGCTGCCGGGGTGGCCCTCGTACAGTCCGCACCACTGCCGGTAGTTCTCGCGGAGATGGTGGATGCGGTAAGGGCACAGGGCGAGGAGGACGAGCCGATGGTGGACACGGTGGCCGCCCGCACTCGTCGCCCACAGGAACCACAGGCTCACGGGCGGTTCCGTCTCCGCGGTCCACAGGCGGGCGGCGTGCTCGGTCGTCTCGCCGTGCTCACCCAACTCGCACAACACATACGGCTTGTCGTCCAGGAGGTCTTCGGCGTCGTCCGGGCCGTCGTCCATGGAAAGCAGGGCAGGGAGTGCTTCGCCGGGCGGGAGATTGGTGATGGCGGTGCATTGC # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //