Array 1 21416-25825 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRS01000031.1 Rhabdochromatium marinum strain DSM 5261 scaffold0031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 21416 28 100.0 37 ............................ GAACAGGGGGTGTCGCGTTAGGGTTACCGGTGCCCAT 21481 28 96.4 37 ..................A......... CCAGGGGGGCAGTCTCTAACTGTCAGCGTCAAAGCAA 21546 28 100.0 37 ............................ CGGTGTGGCGGGCTGGTCAGTCAATGGCGCGGCCAGT 21611 28 96.4 35 .................A.......... CGCATTGCTCTTATTGCGCTGATGCGGGCTGTGGT 21674 28 100.0 38 ............................ CGCTGGCGGATGTGCGCCACGCGCCCGTCGGTGCGCTT 21740 28 100.0 37 ............................ CCGTGTGCCTTTGTGCGGCCGCGCTTAGATCGCCAGC 21805 28 100.0 36 ............................ CTGGCCAGCGCGAAGCAGTGAGTTAAATTGTTTGAG 21869 28 100.0 37 ............................ GCGGCAGACCGCTCGGAGTAGTCACAACCGGGCACAA 21934 28 100.0 36 ............................ GAGCTTGCTGGGCGATAAGTTTTCCGATCAGTGGGA 21998 28 100.0 35 ............................ TTGTCAGCGCAATATGTTCCCATGCGTCAATTGGT 22061 28 100.0 36 ............................ ACGCTGCCAGACCTGATCCAGCGCACGGCACAAAAA 22125 28 100.0 36 ............................ GCAGCACCGATTCGATCAGATGCACGGCGGCCCACA 22189 28 100.0 38 ............................ AGCCAGTCCAGGAGCCAGTCGCCGCCGTCCAGCTCGGG 22255 28 100.0 37 ............................ GGGGTGACGGCGACACCGCAACGGCTCGATGGCAAGT 22320 28 100.0 37 ............................ CACCGATCCTTGTCCGTAAGGCCAAGCTGTTTTGCTT 22385 28 100.0 36 ............................ ACCCAGCAGGCTGGATCCGCATTGTGATATGTAAAT 22449 28 100.0 37 ............................ CCAGCGGGACTGAGCCGTTGCAAAATGTTCGTGGAAG 22514 28 100.0 37 ............................ TCGCGGCGGTCGCAGGGCTTGGGTGCCAGGCGTGCGT 22579 28 100.0 36 ............................ TGGGCGGCGCAGCCAGCGTTTTACACGTCAGTGTGT 22643 28 100.0 37 ............................ CGGCGGCAGCGCCTTATCTTGGGGGGCCGTTCTGATG 22708 28 100.0 37 ............................ CTGCCAAGACAGTGAAATATGTCCCGCCGTTGCCGTT 22773 28 100.0 36 ............................ GTCTGTGCCGTCGATGTGGTACAGGTCGTACCACTC 22837 28 100.0 36 ............................ GCGGAGGAGTTAATAAAATGCTGTGGACTGTAGCAA 22901 28 100.0 37 ............................ TCTTCATCATCACAACCACTAAAGTCACCAGCAACTG 22966 28 100.0 37 ............................ CGGGTGAGATACCAGCCGGCGCGGCATGATCGGCGCT 23031 28 100.0 36 ............................ AAAGATTGCCCGCCGGCCATCCGATGGCAAGCACGG 23095 28 100.0 37 ............................ GCTGGCCCCATGATCTTGGATGGTGGCATCCCGGACG 23160 28 100.0 35 ............................ CGCGCTTCCATGCGGCGGCGTTGCCAGTCCTTGAG 23223 28 96.4 37 ...........................T TATTGTTGGTGCCATCGAGAGTGACGCCAGCGGCGCT 23288 28 100.0 36 ............................ ACCGAAATCCTGGAGGCTGGCGAAGCCTTCAGCGCC 23352 28 100.0 36 ............................ GATCTTGGCGAAGTCTTTGACGGCATTGCCGCCGCT 23416 28 100.0 37 ............................ GATGGGACCGCGACAAACAAAACCCTGAATCAAAGAA 23481 28 100.0 36 ............................ GCAATAAGAGATGCCACAACAGTAACTGGTGTGATT 23545 28 100.0 36 ............................ GGCCTCTTGGGCGGCAGCGAGGTTGGCTTGGGCGTC 23609 28 100.0 37 ............................ GCTGTCAGACCCCGGAGCGAGCCAGCGCGTCAGCCAT 23674 28 100.0 35 ............................ GTGCCAACGACGCCGAAGACCGTGGAGCCGACATT 23737 28 100.0 37 ............................ CGAGATCGCCATCGACATCCAGCGCCGGCGCAGACCA 23802 28 100.0 37 ............................ GCGCCGCCGTCAATGTCATCAAGTGTGTTTTTAAGAC 23867 28 100.0 38 ............................ GATCAGCCCGATTAAGCCCGGCACCTTGCAGCTCATGT 23933 28 100.0 36 ............................ CAGCGGCGTGCTGTATATCGGCACGCAACAGGCGCG 23997 28 100.0 36 ............................ GCTTGGCATCGGCGATGGCCGCGCGCAAGTCGGCGA 24061 28 100.0 37 ............................ TTTTTGACAGCGGCGTCGATTTCTGCGTCGGTATAGC 24126 28 100.0 35 ............................ AGCCAGGGTTGGCCGGCAATCGCGTCGAGGGCGGT 24189 28 100.0 37 ............................ GAATTGTCGAATCGACATCCGGCAGGGCGCCGGTGGT 24254 28 100.0 36 ............................ TGTCTGGGTGCGGTCTGCCAGGACGCCAATTGCGGT 24318 28 100.0 36 ............................ CGTCATATTCCCGGCTTTCGCCAGGAGCCATCTCTT 24382 28 100.0 36 ............................ CCACTGAGTGACGGCGCTGTTGTCAGTGGCGCGACC 24446 28 100.0 37 ............................ CGGCTGTCAGCCAGGGCTATCCCGAGATTGCCAACCT 24511 28 100.0 37 ............................ TATCCGCTGCGCTCAAAGGCAGCGACGCCTATGATCT 24576 28 100.0 36 ............................ CGCATCATCCGGCGCGGCCACCGATGCTGCTGCTGA 24640 28 100.0 37 ............................ TTCCGCCTGCTCTGCAAGGCGAGCAGCCAAGCCGAAG 24705 28 100.0 36 ............................ CTTGATCGCGCAAACATTGGGCGTTAAGACCTTGAT 24769 28 100.0 36 ............................ AACTCCATCACAGTGACAACCGAGGCCGATTGGTCC 24833 28 100.0 37 ............................ TGCGATCAGCAATGATCCGGTTAGTGTCTGCATTGAA 24898 28 100.0 37 ............................ CAATGACTCCTGCCAGGCCAAAGAAAGCCGCTTCGAT 24963 28 100.0 36 ............................ CATGGGTAGGCGCACCTGCACGTTTTGCAGGCTCAT 25027 28 100.0 36 ............................ GGTACAAAAATCCATACGGATGGGCGTCGCATATCT 25091 28 100.0 37 ............................ GCGATCAACACGGTGATAGGCACCGTTGATGCGGACT 25156 28 96.4 36 ..................A......... CGCCCGTCAAGTCCCGTCAATGTGGGCGTCGGTAAT 25220 28 100.0 37 ............................ TTGCGGGTGCGGATGTTGTCGAGGCTAACATCACGAT 25285 28 100.0 37 ............................ TGACCGAGCTGGCGCGGTCGCGGGCATTGATCAGCAG 25350 28 100.0 36 ............................ CACCATGCCGCTGCGCCACGGCGCGCCTGAGTTTCT 25414 28 100.0 37 ............................ TTGATGATCTGATCGGCGGCTTCACCGGCTTTCTGCT 25479 28 100.0 36 ............................ CCATCGCGCGCCATCCGCCTGCCCTGATGCCGCCGT 25543 28 100.0 35 ............................ ATGGTGTGCGTGTCTTCCGATGCGGTGACCCGCTC 25606 28 100.0 36 ............................ TTGCGCCCATGTCAATTCAGCTTGGCCGCGCAAGTT 25670 28 100.0 36 ............................ TGTAGCTTGTCCCGCCTGAGACTGCGCCGCCTGAAA 25734 28 100.0 36 ............................ AATAGACCACGATTCAAGAGTCAAATCATACGTTGA 25798 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 69 28 99.8 36 CTCATAACCCCTCATGGGGATTCGGAAC # Left flank : TTCAACGCCGGCACCTTCCGCGCCAGCCTGTCAGCCGGCGAGGTGCGCCTGCGCGATCTCCACCAGGCCTTCCCGTTCGGAAACGAACTGGTCACCGCCACCATTCGCGGTGCCAGACTTCAGCAGGTACTGAACCGTTCCGCCGCCCTCGACCCACAGGATGACCCCGGCGGTTTTCTCCAAGTCTCGGGCGTGCGCTTGGTGATTGAGGACGGCACCGCCCAAGAAATTCAGATCGGCGGCAAGCCGCTGGACAGGGACGCCGACTATCGGCTGGTGATGTCGGATTTCCTGGCCGCCGGTGGCGACGGCTATGCCGAGCTCAAAGACCTACCCAGCGCCACGGCGACCGGGCGGCTTGTCTTGGATCTGGTGACCGATGCCTTTCGCCAGCCAGGCCGGGTGGATGCTGGAATCGACGGGCGATTATTGCGCCGCTGAAGCTTGGCTCATCATAGCCAATGGAGGTTATGTCATGTCGGCGTTCCTCTTGTTCCAAG # Right flank : CCCTCGAGATTCTTGCAAATTTCCGGTGCCGAAATGGTGTCGGCAAGAAAAAATTCCAGAGCCAGATGATATCTGACAACGTCGCAAGAGTGCGCGGCGTGCTTCAGTGAGTATCGAAGTTGGTATCACAAGACACCAAAGTCGGTCTTGTGGCGAGTATCCTCCGACCTGGCAACCTCGCCTTTGCCGGATTCGGATTTTACCAAGTGGGTCACTTCGACATTTCGTCGGTTTGCGGCGGTGATTTCCGTCAGCCGATCCTCGGGTATCATCAATTCACTGAGCTCGCGGCGCAGTCTGATGGCGTTCGCTTCAGTGATGTCTCCAGTGAACACAGAATATTGTTCGTGATTCAGGTAGCGGCGGAGCAGTTTTCGGAATCGGTTTGTCCGTTTGGCCTCGACATCGTAAGTCATCAGCATAAACATGGCTATGGCTGTCTCTTGAAGGATTCATACTCTGCCACTTCAAGCACTTCTCGTTCAAACGCGAGTGCCTCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATAACCCCTCATGGGGATTCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA //