Array 1 6097-509 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB905937.1 Caldimonas manganoxidans ATCC BAA-369 F615DRAFT_scaffold00009.9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================== ================== 6096 28 100.0 33 ............................ CAGTGCCGCCGTGGAGAGTCTGAGTGAGGAGAA 6035 28 100.0 33 ............................ ATCAGTCCGAGATCGCCAGGCGCTTCGGGTGTC 5974 28 100.0 33 ............................ TGAACCGCAGCGGGTTGCGCGGCTGCGCGCCGG 5913 28 100.0 33 ............................ CGTCGTTGAGGTCGGCCGACTTGGCGGGCGCGG 5852 28 100.0 33 ............................ TGAGCGTGTCAACGGATGCGACGGCGACGGGCG 5791 28 100.0 33 ............................ TCGTCGCGCCTTCGGCGACGTAGCAGAAAACGA 5730 28 100.0 33 ............................ CTGTTCGGCTTCGATTTCTGGACTTGCCTTCAG 5669 28 100.0 33 ............................ TCAACGCCCGCCAGCGGGCCGCCGCCGAGTTGC 5608 28 100.0 33 ............................ CTGCGCGTCATCTTTCAGAAAGCCGATCTCCGG 5547 28 100.0 33 ............................ TCGACGGCCGCGTGATCGAGTGGCGACACGCCT 5486 28 100.0 33 ............................ CCAGACAAAGCCCGCCGACGCATACCGAGGCAC 5425 28 100.0 33 ............................ GCAATACATCGAGACATAGACGCGCAGATTTCG 5364 28 100.0 33 ............................ TGCGACTGCTTGTCAGCGAAGGAAAGCGCCACG 5303 28 100.0 33 ............................ TGCTCGATGCGTCGTCGCTATCGGCGAGCCGCC 5242 28 100.0 33 ............................ CGTGCCAGACGGCTTGCTGAAGGCCAATGCATG 5181 28 100.0 33 ............................ CCCTATGGCCTGGACGCTCGATCAACTGCAAGC 5120 28 100.0 33 ............................ CTATGGACCCGAAGGAAAAGGAAGGGGGCCAGC 5059 28 100.0 33 ............................ TCGGAGCGCTCGTCAGCGGAGCCCAGGCACTTT 4998 28 100.0 42 ............................ TTACGAGAACGGGAAGAACCTGCCGGCCGGCTACATCGAGTC 4928 28 100.0 33 ............................ CTGGGACCCGGCCCGCACGTCCTTCAAGGACTT 4867 28 100.0 33 ............................ CTTCCTCTCCGGCGCGCTGGGTGGCGCTGGCGG 4806 28 100.0 33 ............................ CCGTCAAGGGCGCCACCAGCCTGACCATCGCCA 4745 28 100.0 33 ............................ CCCGTCCAGAGGACACACCCGCATGAGCATCGA 4684 28 100.0 33 ............................ CATGGTGCAGACCGCAGGGTTGGCGGTGGACAA 4623 28 100.0 33 ............................ CAACACGAACGCGGCCAACATCGGGGACGCCAC 4562 28 100.0 33 ............................ CCTCACTTTGGTCGCGGGCTCAGGTGTGACGAT 4501 28 100.0 33 ............................ CGCATCCCTCTCACTCTCGGAGAGAGTCGGGGC 4440 28 100.0 33 ............................ TCCTGGGTCGCCATCGACGAACTGCTTGCACCT 4379 28 100.0 33 ............................ CTACACCCCCCGAATTGGTTTTGAGCCTGCCCC 4318 28 100.0 33 ............................ CCACAGTCTGGCGCACCGCCCAGGATTCTTCGC 4257 28 100.0 33 ............................ ACGCGCTGCCTTTCTTGAGTCTCCGCTGTTCGC 4196 28 100.0 33 ............................ GCACTGGAGCGTGTACGGAGCCATCGGTTGCTT 4135 28 100.0 33 ............................ GCAAGGCCGCAAGGTCATCACGAACCTACCGGT 4074 28 100.0 33 ............................ CGTCAGGCGTGACAGGCACTTGCGCGTCCGATC 4013 28 100.0 33 ............................ TCGTGGCGAAATTTTTTTCAGCCCATGTGCGAA 3952 28 100.0 33 ............................ GCAGCAGAAGCGCCGTAACCATCACGCGACCGA 3891 28 100.0 33 ............................ CAGGACAACGAACGCGCCGCCCAGTGCGATCCA 3830 28 100.0 33 ............................ TATGGCACGTTTCAAAGTCGTCGGTTTCAAGCG 3769 28 100.0 33 ............................ CTCCTTCATCGCCCGGATGGCGTCTCGGATTTC 3708 28 100.0 33 ............................ CCGTTGGGGTTGCGAGATACACAGGGAACTTCA 3647 28 100.0 33 ............................ CATGCTGGCGGATGCTTGGCTGATCGGGGAGAT 3586 28 100.0 33 ............................ CTCATTCCTGCCCTGCGCGAGCGGCTGGGGGTG 3525 28 100.0 33 ............................ TTCGCCGTACCTTGGCGTGATCGGCAAATCCAC 3464 28 100.0 33 ............................ CTCAGATGTCCGGCCCCGCTTCTTCTCCTGGGC 3403 28 100.0 33 ............................ CTCGTGGGATACCAGGACAGGGATTGGTACAGG 3342 28 100.0 33 ............................ CCTATCGAGCGCGATGGCATCGAACGTCTTGCG 3281 28 100.0 33 ............................ CGCCTGCACGGCGTCGGCCAGCGGGTCGGTGGT 3220 28 100.0 33 ............................ CCCGCATGACCCGGTAGTGACCGACGCGATGGT 3159 28 100.0 33 ............................ CTCGGTGAACTTGTTCGGGCTGTTGCCCGGCGT 3098 28 100.0 33 ............................ CCAGGCTCGCACCTCTTCGACTTGGTATTTCTT 3037 28 100.0 33 ............................ CTATTTCCACGAGCTGTTCCAGCGCGGGCAAGA 2976 28 100.0 33 ............................ CGCGCCGGGCTGTAGCTGCCCGGATCGGCGAGC 2915 28 100.0 33 ............................ CCTCGAACACGCCGTAGCCGTAGAGCGTGGCAT 2854 28 100.0 33 ............................ CCCGAGCCGGGGTGACGGTCATAGACGTAGGCC 2793 28 100.0 33 ............................ CGACGAGCGCGTCGCGGTCAGGATGCGCTGCAT 2732 28 100.0 33 ............................ CGAGGCCTTGGACTGCGCAGTCGGCAATCTGGC 2671 28 100.0 33 ............................ CATGCGCTATGCGGGCCTGCTTGCCCGTGGCGA 2610 28 100.0 33 ............................ CGCTCGTCCATGGCTCAGGCTCCTTGCGTGCTG 2549 28 100.0 33 ............................ CCACCGCCTCGGCCGAGCACAGCGCCTCACCCA 2488 28 100.0 33 ............................ CTACTACGAGCACCACATCCGGGACTACGATGC 2427 28 100.0 33 ............................ CGATGAACTGCACCTCGGTGCGGCCCGCCTTGC 2366 28 100.0 33 ............................ CGGACGCGTGGCCTTCGTCTGCTCGATGTGCCG 2305 28 100.0 33 ............................ TGGCCGCTGCGCTCGCGCTTGAACACCGCCAGC 2244 28 100.0 33 ............................ GCTGCCGGGCGGGCTGATCATCCAGTGGGGGAC 2183 28 100.0 33 ............................ CATCACAGCGGCAGCAGCCGCTGCCCAAACGGC 2122 28 100.0 33 ............................ GCTCGATGGATCGCCGCCGTCCCCCGATCACAT 2061 28 100.0 33 ............................ CTGCCGCCGCGCCGAGTTTGAGTGAAGAGACCA 2000 28 100.0 33 ............................ CGATGCTCCCTCGATGCCGTACCCCGAGCCCTA 1939 28 100.0 33 ............................ TTCCAGCAGGAGGGGCAGGCGCTGCGCCGGCTG 1878 28 100.0 33 ............................ CACGCCGTAGCCGTAGGGCGTGGCAGCCCACGC 1817 28 100.0 33 ............................ CTCCACATGCGTGGCCTTCTCCCCCTTGCGAAC 1756 28 100.0 33 ............................ CAAGACCGAGCAGCGCATCGAGCTCATCACCGG 1695 28 100.0 33 ............................ ACAAAAGCCGCCTCGCGGGCGGCTTGCTCATGG 1634 28 100.0 33 ............................ CGACAGGAAACGGACTGACTTCTGCCCCCTGCG 1573 28 100.0 33 ............................ TGCGCGGCGGAAAGCCCGGTCGTCGGCGTCGGC 1512 28 100.0 33 ............................ CGCCGCGATTGCCGGCATGGTCCAGGCCGCCCA 1451 28 100.0 33 ............................ CATGGTGGCGCATCGGCGAGTTGCTGGTGGAGT 1390 28 100.0 33 ............................ TCACGGACAAAGCGGCACGCGAGCAAGCGGCGT 1329 28 100.0 33 ............................ CAGCGTCATGCCCATCACGTCGCGGATGAGGTA 1268 28 100.0 33 ............................ TGGCGTGGTCGGGCCGCGCTCCACCTTTGAAGA 1207 28 100.0 33 ............................ CAGTGTGCGAGGTTTGTCCAGCCTCGGTGTGGT 1146 28 100.0 33 ............................ CGTCGATCGCCCCTTGCTGGTCGCTTACTGATC 1085 28 100.0 33 ............................ CATCCGGTGGCTGCTGTCGCGCAGACTACCGGC 1024 28 100.0 33 ............................ CGGCAGAGGCTGAATCCCCTTCGCCGCCGCCTC 963 28 100.0 33 ............................ CCAGCGGTGTATCTGACACGCACGGCATTTGGG 902 28 100.0 33 ............................ CCAGTCTGGTCCCTACTATCAGCAGGTCATGCC 841 28 100.0 33 ............................ TGACATGCCTGCAACTGCTTTTCAGTTCTACAA 780 28 100.0 33 ............................ CATGGATCGACGAGTACGGCGAAGACAGCGACT 719 28 100.0 33 ............................ CGGAGGCGCGATTTCTCGATCCCCCATGTCCAG 658 28 100.0 33 ............................ GCGCTGCGATAGCGCTGCCGCGATGGCGTGCAT 597 28 100.0 33 ............................ CCAGCTCGCGCGCCTGAGTGTACGACCGGCGTC 536 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ========================================== ================== 92 28 100.0 33 GGCTGCCCCGCGCGAGCGGGGATCGACC # Left flank : CCGTGCCGCTTGCCTTTGGTGCGGTGCGGGCCATGCTCGACGGCAAAGCCGACAGCTTGGAACGGGAAGTGCGCCGCCGAGCGGCAGCAGCCTTCCGGCGCGACAAGCTCATCCCGAAGATGATCGAGCGCATCAAGGAGCTTTTCGATGTCGATGACCGTGGTGGTGACGCGTAACGTGTCTTCGCGCGTGCGCGGCTTCTTGGCCTCGGCGATGCTGGAACTCGCCCCTGGCGTTTACAGTGCGCCACGGTTGTCCCCAGCGGTGCGCAGTCGCATTTGGGACGTGCTCGAAGCCTGGTTTCCCAACGAGCGGGAGGCTTCGATCGTGATGCTTTGGCAGGAGCGAAACATGCCTGGCGGACAAACCGTCCGCAGTTTGGGCAGCCCTCCGATCGAGTTGACCGAGGTCGACGGCCTGATCCTTGCCCGCCGGCCGTCTGAGCGCTGAATCACCAGGTCAGCGTAAATTCTTTAACAATCAATGAGTTACACTGGACA # Right flank : TCTTCCTCGAACGTCGTGTCCTCTTGGGGATCGACGGCATCGCCGCCACGGCAGCCGCAGCCGCCTTCGTCGTCTTCCTGCTTGGCATACATGCTCCTTGTGGTCATGCTATGCCTCGCACACAAAATTCCGGACAGACTCGATGATGGCCGTATGCCCAGCAACCCGAGCCGAAGATACTTCGGCAGGTTCACGCCCGATGGATTCTTCATAAGCATGCCCACCAATCGTGCGCGGAGCGAACCTCAAGAGCTTGATGCCCGCCATGCGCGTTTGGCGCTCAATCTCCTTGCGTCGTTGCATCAGCCCGGTCTCCGGGCGAGCAACGCCTTCATCGCCACTGACACTAAACAGGTTGATATACACATCCGGCGCCCCCATGAGGTGGTAGTTCACAGAAAACTCCGCCGCTTCGGCCTGCGCTCCCATCCAAAAGCCGTGCGCAAAGCAATCCCCAGGCTCGCTGGGAATCTCCTCCTCACGCCGACCCCGCAGCCGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTGCCCCGCGCGAGCGGGGATCGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 1842-2365 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB905989.1 Caldimonas manganoxidans ATCC BAA-369 F615DRAFT_scaffold00061.61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 1842 27 96.4 33 .....-...................... AAGTCGATGAGCGGCCGCAACACCCGTCCAGCC 1902 28 100.0 33 ............................ TCCGGGGATTGGGTTTTTCCAGCCCAACATGCA 1963 28 100.0 33 ............................ CAACCTGCTCCCTCGGAATCAGCGCCAGCACGG 2024 28 100.0 33 ............................ CGCCAGCGGCAGGCCGACATTCGCTCGGCCGTG 2085 28 100.0 33 ............................ TGAGCGCCTCGGCCTGCTCGTCGTACATCGCTG 2146 28 100.0 33 ............................ CCACGGAATGCCGCGCCGCTGCTCTGGCCGGCT 2207 28 96.4 33 .............A.............. GCCGAGCTGGCTCATGGGCTTGCGGTTCGCGGC 2268 28 78.6 39 ....C.T...G....T....T......T TCACCAACAGATACGGTGACATCGCTCACAGAGCCTCTT T [2285] 2336 28 78.6 0 ..........TC....A.....C...AT | G,T [2343,2357] ========== ====== ====== ====== ============================ ======================================= ================== 9 28 94.4 34 GGCTGCCCCGCGCGAGCGGGGATCGACC # Left flank : GCGCAGCGCGTCGAAGAAGACCACCGGGTACATCGGCTCCAGCGGCCGGGCCTGCCAGGCCGCCACCTCGGCCATCACGGCGTCGGTGACCGAGCTGATGAACTCCGGCGACACCTCGGTGCCGTACTGCTCGGCCAGGAAGGCCTGGATCTCGCGCACGGTCATGCCGCGCGCGTACATCGCCACGATCTTGTCGTCGAACCCGGTGAAGCGCCGCTCGTGCTTGCGGATGAGCAGCGGCTCGAAGGAGCCCTCGCGGTCGCGCGGGACCTCGATGCGCACCGGGCCGCCCTCGGTCAGCACCGTCTTGCCGGTGCTGCCGTTGCGGTGGTTGGCGCCGTCCTCGGGCTTGGGCGCGCCGGGCGGGTAGCCCAGGTGATGCGTCAGCTCAGCGCCCAGCGCGCGTTCGATCAGCGCCTTCTTGAAGGCCATCGAGACGGCCTGGACCGCCTCGGCGCTCATCGGCCCGGTCACGAACTGGTCAATGATCTCCTTGGTTG # Right flank : TGCGGGCCCACGCCAAAAGCGGGCGCTCCACTCTCAAGCCGGCTTGTGGCGATTGCCTCGAGGGTCACGTCTCTCGCTTGTGCGATCCATCGCACAGCGGGGCGTTTGCGGTGGATTTGCAGCCGCAAAACCACACCGTGGTATCTTGGGTTGCGCTGTACTTCACGGGCATGAAAACGCCTTGGGCCCGGTGCGAGCCGTCGCAAAACGGCTGGTGCGTGCTCAGCCCGCAGGCGCACCACCAGTAGTCTTTGCCCGCTTCCACCTGCACCGCAAATGGGCCGTTGCTTGCGCGAACGGGTGTGGCCATGATGCCCTCCTGACGTGGGTTGAAGGCCGTGCCTCATCTTGGCACGCTTTGAGACGGACCGCCAGGGGCCCCGTGCGAGAAGACTCGCAGACCCCAAGGGGGGCCGCCTGCAGGGCACTGGGGCTGCCGGTTGACGAGTCGGTGACACACATCGACCCAGCCCTGGGCTATCCTCGGCTGCCATGAACCT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTGCCCCGCGCGAGCGGGGATCGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //