Array 1 65346-66777 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAARZ010000054.1 Escherichia coli strain 4374 Ec-4374_contig54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 65346 29 100.0 32 ............................. TATCAGGAGCGTGAATAGTTTTGTGTTTTTGT 65407 29 100.0 32 ............................. GCCGCTGTATCCGTAGTCCGGGTGATACGGTG 65468 29 100.0 32 ............................. GCTCACTACCGCCGAAATCGCGCAGGCACTCC 65529 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 65590 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 65651 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 65712 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 65773 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 65834 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 65895 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 65956 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 66017 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 66078 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 66139 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 66200 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 66261 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 66322 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 66383 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 66444 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 66505 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 66566 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 66627 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 66688 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 66749 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 92481-94339 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAARZ010000054.1 Escherichia coli strain 4374 Ec-4374_contig54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 92481 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 92542 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 92603 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 92664 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 92725 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 92786 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 92847 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 92908 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 92969 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 93030 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 93091 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 93152 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 93213 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 93274 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 93335 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 93396 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 93457 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 93518 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 93579 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 93640 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 93701 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 93762 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 93823 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 93884 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 93945 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 94006 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 94067 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 94128 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 94189 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 94250 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 94311 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //