Array 1 76326-76157 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCXR01000023.1 Bifidobacterium breve strain BR-20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 76325 33 100.0 35 ................................. GGAAACGCCTGCATCATCGACGCCGGGTCCATGGA 76257 33 100.0 35 ................................. GTGACGTCCTATCTTCGTGGCGGATCGATCAACGG 76189 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= =================================== ================== 3 33 94.9 36 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : AAACTAGTACGGGCAGGACGGGCCGGTGTTCATTTCTCGCCACACGCTGAAATGGACTAAAACCTGCCGCTCATCTGGAGACTTTCCACACGCTCACACGGCCCACTTTCTATTGAACAGACACAAGCGTGGATTGAAATATACACTCGGCATGTATACAGTCTCATATCACAC # Right flank : GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATATCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGCTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAAATCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGTAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCTGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGCC # Questionable array : NO Score: 8.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2235-113 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCXR01000019.1 Bifidobacterium breve strain BR-20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 2234 33 100.0 33 ................................. GTGTCCACCATGCGCAAGGCGGGCGCGGACATG 2168 33 100.0 33 ................................. ATTTTTTACTTGGGAATGACGATGGCGGAAATC 2102 33 100.0 35 ................................. ATCGCCATGCGCAACGCCGGTCACACCACGCTCGG 2034 33 100.0 35 ................................. TCAGTCCCATAGTACATCCAGCACGGAATGGCAAC 1966 33 100.0 35 ................................. GCCACAATCTCGATACCCTCCAATGCGACTTGAGC 1898 33 100.0 36 ................................. CTGTGTCGCGCGGTCTCGGTTTGGTTTCCGCGACGG 1829 33 100.0 33 ................................. AAATTTGATTGCGTTGTGACATTCGGGCCTGCC 1763 33 100.0 35 ................................. CCAGATGATATGAGGGCGGCGCGGGCTGGTACTTG 1695 33 100.0 34 ................................. CCCGGCAACACGGGCACACGGGAATAAGGGAATA 1628 33 100.0 35 ................................. CCGGTGTAGCCATACGTTGCCGTTGAGTCCGTCGT 1560 33 100.0 35 ................................. AACGAGCGCTACCGGACGCTGGACATGGAATACAA 1492 33 100.0 33 ................................. GTGTACAAGGCGGTTGCGGTAATCGGGATAGTG 1426 33 100.0 34 ................................. TGCTCGCCCGAAGTCAAGTCGGCGCTTGACGTGC 1359 33 100.0 34 ................................. ACCGATTCCGTGGCGCAAATGGTCGAAAACGGCG 1292 33 100.0 35 ................................. ATCCGGCCGGGAAGCCTGGAACCGTACGATCCGGC 1224 33 100.0 35 ................................. CTCGGTCGCGGGGAGCACGGTGTCGTCATGCCTTC 1156 33 100.0 34 ................................. AACCTATCCAACGGCATCATGGGAGTGCTGGTCA 1089 33 100.0 33 ................................. TCCATAGTTATGGCAGTTGCTGAAAATTGTATC 1023 33 100.0 36 ................................. ATCCAGCGCGTCGAATACGTCAACGCTCATTGCACG 954 33 100.0 34 ................................. AACAACAAGGCCACGCATGAGGAACACAGCGCCG 887 33 100.0 33 ................................. CTCGTACAATGGCCGTTTCTCGCAAGAGGGACG 821 33 100.0 36 ................................. CCAGGCGGGCCCGGACGCCACAACGCAATCAAATTT 752 33 97.0 34 .........T....................... CTGAATCAGGCTCATGGCGCTCTGACTGCGCCCG 685 33 100.0 34 ................................. TGGACTATCGGCACCAATACATCCACGAGGCCGG 618 33 100.0 34 ................................. ATCTGCGGGAAAATGCTCACATGAGCGGAACCCA 551 33 100.0 33 ................................. GGCATGGGTGAAATACGCGCAGAACACGCAAAT 485 33 100.0 33 ................................. ATAGAGATTGTTGATTAGCCGCCATATGACGGC 419 33 100.0 34 ................................. AGCTGGTCGGGCATGAGCCTGCGCGGCATCGCCA 352 33 100.0 33 ................................. TGCAGATCGAACCCGTTGTACGTGCGCTCGTGG 286 33 100.0 35 ................................. AACGACCTCGACACCGGCAAGGTCTACTACTGGAA 218 33 100.0 34 ................................. CCGTTGTACCGTGGGTTGGGGTCGCGTGGACCGT 151 33 97.0 0 .........................T....... | CT,TTG,T [117,122,127] ========== ====== ====== ====== ================================= ==================================== ================== 32 33 99.8 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GAAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGACTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGTAAAGGATCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGGTGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCTGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGCAGAATGACGTGGAGATGAGGGTTATTTTCGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTGACTTTTGCGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : TTTTTGTGGGCCGTTTCGGCGTTTCTTTTAGTCCGTTTGAGCGGTTGTTTTTAGGCCGTTTCGGCTTTGGCCAGTCCTGTGGGTTGTCGGTTATTGCATGAGGGCGTGGGTCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //