Array 1 23-471 **** Predicted by CRISPRDetect 2.4 *** >NZ_CWJK01000050.1 Yersinia kristensenii strain OK6311, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 ............................ TGCCACTTAACCGGTGGCAGCAATAAGACCAC 83 28 100.0 32 ............................ CAGCCAGTGTGAGTATTCTTCGCTGGCCAATG 143 28 100.0 33 ............................ TGTTGGCCCACTCAATTGCAAGCCGTGATTCAT 204 28 100.0 32 ............................ ATTTCATGAGATACGAAGTTTAGCTTCACGAC 264 28 100.0 32 ............................ AAGATAGAGGTTAAGCGTGCCAGATTATCACT 324 28 100.0 32 ............................ GCACAAGGTGTGCTACTGCAAGGTCAGGCTGA 384 28 100.0 32 ............................ TTTCCCGCCGCACGGCTTACACAGCAACCGGA 444 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 100.0 34 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGCGGTATTGCTTCTTGGATAGG # Right flank : AAGAAATTTTAGCAACCGGGTTCCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [18.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 217567-216034 **** Predicted by CRISPRDetect 2.4 *** >NZ_CWJK01000002.1 Yersinia kristensenii strain OK6311, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 217566 28 96.4 32 ...........T................ ATCATGCGGCCACGTACCTGCTGCCACATAAA 217506 28 96.4 32 ...........T................ AAACAATCCAGAGCAGCTTCATATAAGTCTGT 217446 28 96.4 32 ...........T................ AATGGCTGTGGAGCTTACTGACATCGCGTAAC 217386 28 100.0 32 ............................ CCTTAACTATGTGGTTAATAACTCTAATATTT 217326 28 100.0 32 ............................ AAGCCGGTAAACTCAGGAACCAGTACGCTTGC 217266 28 100.0 32 ............................ AAAGCATGAAGAGTCAGAACCGGGCAGAAATT 217206 28 96.4 32 ..........T................. AAATACCTTGGCATGAGCCGCAACGCCGGGCA 217146 28 100.0 32 ............................ ATTCCAGAAGATGGATGATGGCCGATACCAGA 217086 28 100.0 32 ............................ CAACGCAAAAGCCGCTGGCACTGATGGAGTAC 217026 28 100.0 32 ............................ TATGCGGTCTGCGTAGCCGTCGAACTGATTAT 216966 28 100.0 32 ............................ AAATATAAAAATGGAAGAACCAGAAACCAAAA 216906 28 100.0 32 ............................ GTAGCGCCAGTAATACCCCACGCATAATGCGC 216846 28 100.0 32 ............................ TAATGGCATGAATACGACACCGAGCACCATTA 216786 28 100.0 32 ............................ ATAACGGCGGAAAGTGCTGTCCGGGGAGTAAC 216726 28 100.0 32 ............................ GTGAGTTTCAGCTCTGCAACAGTGAACTGCTC 216666 28 100.0 32 ............................ CGAAATAGCGTGCAGAACCGTCCCAGCCCGAG 216606 28 100.0 32 ............................ AGTCAGCATGAGCAGGCGCACAAGCTTCGCCA 216546 28 100.0 32 ............................ ATCTTGGTACTGGCGCTGAGTTCATGTTTTAC 216486 28 96.4 32 ...........T................ ATAATTGTCTCCGTTGGTTGGCATTATCACAG 216426 28 96.4 32 ...........T................ AGAAAGGCGGCGTTCTTTTTTATGTTGTGGTT 216366 28 96.4 32 ...........T................ GCTTAGTGCCATTAGCGATATCAGCACGAAGG 216306 28 96.4 32 ...........T................ AGTACGCATCCTTTGTGCTCGAGAGCTGCAAA 216246 28 96.4 32 ...........T................ GTAACGGCTAAATCTGCAACTCTATCTATTTC 216186 28 100.0 36 ............................ AGCAATAGTGCGGGCAACCTAAACCGTAATCCTCAA 216122 28 96.4 32 ..............C............. AATGGCAAATTAGATGCAAGTCGGGCGTTAGC 216062 28 100.0 0 ............................ | T [216039] ========== ====== ====== ====== ============================ ==================================== ================== 26 28 98.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTGCCGCACAGGCAGCTTAGAAATTTATGCGGCTCGTTGACGAGTGCAGACCTGCGTTCACTGCCGCACAGGCAGCTTAGAAAATGGTGGCGCGCCATACATGATGGTGGGTGCGGTTCACTGCCGCACAGGCAGCTTAGAAAAAATAAAAGAATCAAACCTCTGGTGGTTAAATGTTCACTGCCGCACAGGCAGCTTAGAAAAGCGGTCAATTCGTTTGTGTTGGCATCATGATGTTCACTGCCGCACAGGCAGCTTAGAAACTCCAGACCTCGGCATTTAAGGAATGACTATGAGTTCACTGCCGCACAGGCAGCTTAGAAAACGCTCACCACGCAAGGTGTAAATTAAGCGTAGTTCACTGCCGTACAGGCAGCTTAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCACTGCCGCACAGGCAGCTTAGAAAACGCTCACCACGCAAGGTGTAAATTAAGCGTA # Right flank : TCTATCCGACTTCTTATTTCTCCTTTCTCGCTTCATACCTCCAAAGAGGTATATGTTTGATTTTATGCAAAAATTGTTTGGTGCTGAGTTTTTTTTGAGCTGGTTCATAAAATCAAATACCCACACAAAGAATATTTGATCTAAAACAAGCATTGTTACTACAACAAATCATTTACTGAAAATCCTCCTTACTATCTCCATAACCCGCACTGGGTAAATCTGTCATGGGTATCACTGAGTGTCTTACATTCCGGTGCGGGTTTAAAAATAAAAAAATGACTGTCTGGTGCAAGCACCGGCGGCGTCCGGTATGGAAAAACACACTGGAGTATCTATTGTGAGCAAATTTATAAGACAAATGTCGGTAGGGATATTGGCGCTATTGGTCATCGGAGGGGTGTTTTCTGTGTCGGCAGCACCTACGCCGCCGATTGAGGCCCGCAACGATAAGTTCGCGCAGCAGCATGCGGATCAGTTCACCTCTTGGTTGAAAACCAAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 228256-227568 **** Predicted by CRISPRDetect 2.4 *** >NZ_CWJK01000002.1 Yersinia kristensenii strain OK6311, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 228255 28 100.0 32 ............................ TTCATCATTAGAGAAATCAGCAAGACGGGCCA 228195 28 100.0 32 ............................ TCTACTTAATAACGTGATAGCAATCTTCACGA 228135 28 100.0 32 ............................ AACGGAGACAATCATGTCTGAACAAACCGGAC 228075 28 100.0 31 ............................ ATGAAGAACTGCTTTCCTTTGAAGAGAATGG 228016 28 100.0 32 ............................ TTCGACTGATTGCTGGAATGCTTCGGCGGGGA 227956 28 100.0 32 ............................ TGATGATATCTGCCTGCTAACGGTTAACTACA 227896 28 100.0 32 ............................ ATCACGACAGTAACCGGTGAAAGGAATGTAGC 227836 28 100.0 33 ............................ AAGTCTACCGCGTCATATTTGCTTTCGTTATAA 227775 28 100.0 32 ............................ GTCGATTGAAATCGATTCACGAACTACGAACA 227715 28 100.0 32 ............................ TGCTTTGTGACCCCCTGATATCCTTCGTTCCG 227655 28 96.4 32 .C.......................... TCTAGTGATTGATGATTGTTTCCCCGAGTCTC 227595 28 75.0 0 ....................TAGCACC. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGGCTTTTTGGGCGATTAAACACGAACAAGCTTTACAAGCGGCGGAGCTGTGTTTATAGTTCGGCTCGTTGCGGAGGGGTGGCCGAGTGGCTGAAGGCAACGGTCTTGAAAACCGTCGACGGGTAACCGTTCGAGAGTTCGAATCTCTCCTCCTCCGCCATCATTTCTCTGTTTCTCCCGCTGATTATCCTTGCTTAATCTCCTGAAGTACCTCAATTTTATCGGTCATATTTATTCTTTCTGACATAACAAAACTAGCAAAGCCCGCCCACAAAATAGTGAACTATAAGTTTTTCAAACTCTCTGTTGTTCGTCACATCATCCGCAGCAGAAAAAGGCTTAATAACATTTTGGCTAAACCTCATTTTAAACCCTTTTTTTAACGTACTTTTTAACTTATTGATTTTATATAAAAACCCCCAAGATTTTAAAAAATCATTTTTTATTACTACGGTCTAATGCGCTTTTATTATCAGTAAGTTATCTGTATTGTTCTACT # Right flank : AGATTGAGACCCCAAACACATATTGTTACTTGCAGTCGGGTTATGACTATTTTCTATTACCGACTTTGCCAGTATTGGGTTAGTGTAAATAAATTAATCATATCAATATCGTGCGGACCTCTATCTTGGTAAGAAGCGCCCGCTGACTGACAAGATACAATTAACCCGTTAGAAATATTTGGGCGTTCTGTCTAAGGAGGTTGCTGGCGATGGACAATTCTATTCATTCCTCTGATTTGAAAACAATTCTTCATTCAAAACGTTCAAATATTTATTATTTAGAATATTGTCGCGTATTAGTTAATGGCGGGCGGGTTGAATATGTCACTGATGAGGGGAAACAGTCCCTTTATTGGAATATCCCCATCGCGAACACCACTGTCATCATGTTGGGGACGGGGACCTCTGTGACTCAAGCCGCTATGCGTGAGTTTGCCCGCGCGGGTGTTTTAGTCGGGTTTTGTGGCGGGGGTGGGGCACCACTTTTTGCGGCGAATGAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //