Array 1 35190-36778 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHDJ01000009.1 Providencia rettgeri strain AMW342_S1 4_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35190 28 100.0 32 ............................ TTTTTGAGCCTTACGCGCTTGCGGATGATCTT 35250 28 100.0 32 ............................ TAAATTTCGCTCCGTTGATTACTTATACAATT 35310 28 100.0 32 ............................ TGTGGAAAACGCCGGCTAAACATAAATAAGAT 35370 28 100.0 33 ............................ GTCAAACCTTTGATTACTCAGCACGTTATTTCT 35431 28 100.0 32 ............................ GCCATGTTGGTGAGTATGAATAACCACACCAT 35491 28 100.0 32 ............................ TAAAGGGTGGTGGTCAGGCGACGACAACAAGT 35551 28 100.0 32 ............................ ATGCTTTACTACAAACTGGCTTGAAGCCTTGT 35611 28 100.0 32 ............................ GATATTTGCTCTGCATCATCCTGCTCGCTAAC 35671 28 100.0 32 ............................ ATAATCCCTTGCTGCATTCCAGACGGTCTATT 35731 28 96.4 32 ............G............... TGAGTAAGCAAATCATCACGATAATCATAGAA 35791 28 96.4 32 ............G............... TTGTTCAGATAGCGGAAGCAATCGGCATGAAT 35851 28 96.4 32 ............G............... GTAGGCATGTAAGCCGACATACATTTGCTTAA 35911 28 96.4 32 ............G............... AGTTCCGTCACATATTAAAGAAAGCAAATATA 35971 28 96.4 32 ............G............... TTTATAAAAATCAGATGTATACATTCTTGATG 36031 28 96.4 32 ............G............... TAATAAACGTACCGCGACGATGATCTTAGCGT 36091 28 100.0 32 ............................ ATCCTCAGAACTTGAGAAAAACACATTAACTA 36151 28 100.0 32 ............................ ACTTGGTAACGCTCTGTTTTTCACTAACAAAT 36211 28 100.0 32 ............................ ACTTGGTAACGCTCTGTTTTTCACTAACAAAT 36271 28 100.0 32 ............................ GTTATAGCGTACCGATGTGGTACCCCGACTAT 36331 28 100.0 32 ............................ ATACGCACTTGCAGTCTCGAAGTGATTACTAT 36391 28 100.0 32 ............................ GTCAATTTCATAGTTAAAAATATTTTTTCCGT 36451 28 100.0 32 ............................ CTACGGCAAAGATGAAGAGATGGAGCTGCAAG 36511 28 100.0 32 ............................ ATTGATATTGTAGGGACACAAAAAAAACTAGG 36571 28 100.0 32 ............................ ACATCCGGTGCCGGTAATAAACTTAAATCAAT 36631 28 100.0 32 ............................ TTGAATTTTCTTTCTCTGAAGCACTGATGCAA 36691 28 100.0 32 ............................ CTACCCACGCCACGCTATTTATGTGATTTAAC 36751 28 92.9 0 ......................A.A... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.9 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : GACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTATTTTGAGGTACCTATATTTACGCACTATTTTTGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : ACAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTGCTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 45416-46405 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHDJ01000009.1 Providencia rettgeri strain AMW342_S1 4_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 45416 28 100.0 32 ............................ TGAGACTACCCCCGTAGTACATGACGGGGGTT 45476 28 100.0 32 ............................ AAGAAAAAAAGATGAAGTTAGAGAGATTAGCT 45536 28 100.0 32 ............................ AAAACAAAATCAGGGGTCCGGGATTATCAACT 45596 28 100.0 32 ............................ ACTGTGAGCACGAAGCAAGTTATAGATAGCCA 45656 28 100.0 32 ............................ TGGTAATCGCTGAGGAGGAACAACCCCTTCGG 45716 28 100.0 32 ............................ GCACACTCTAAAGAGATAAAAACAATAAAGCC 45776 28 100.0 32 ............................ TTAACCCAATTAGTTCCCTGCATTAGATAGCC 45836 28 100.0 32 ............................ TTAACCCAATTAGTTCCCTGCATTAGATAGCC 45896 28 100.0 32 ............................ TATCGCTTCATCCTTGTGATAGTCTTCATTAC 45956 28 100.0 32 ............................ CGTAGGTAGGTGATCTCGATGCTCTAAATAAT 46016 28 100.0 32 ............................ ACGCTAAGATAGTGTCAGCGACAAAGGCCGGA 46076 28 100.0 32 ............................ TCAGAAATAGCAAAGAATCTCACGATTTCCGA 46136 28 100.0 33 ............................ ACATCATCGTTTACGATACTTGAATTTTTATTT 46197 28 100.0 32 ............................ GATAAAATCGGGGGGATTTGAAAAGAGCAGGG 46257 28 100.0 32 ............................ ATCTGATGCCTTTGGGGTTATCTTCAGAGTTA 46317 28 96.4 32 ......................C..... AGTGGATTAAAGAGCTTAATTTATCAACTTAA 46377 28 89.3 0 ...T......A.........T....... | G [46403] ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGCCAAAACCGGATAGAGGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAATCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACAGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGTATGTTATAATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : AGAATATTAAAGAATAGATATCTAGATTCTCTAATTGGTGAAAAAAATAAATATGAGTTAAAACTAGTTTTTGTGTAATGAGTAGCCACACTGCTCTTCCTTAAGGTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCGACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGATCGAATAACCAGATAATAATAGGGATAACTAGGAGGGGCTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATAATTTTATAAATGATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACTCCTAGCATACTGATACCTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //