Array 1 96709-95766 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGIE01000040.1 Escherichia coli strain SI-P010 sequence040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96708 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 96647 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 96586 29 96.6 32 ..A.......................... CCGCCGTCGAGTGTAATACCCTGATCCATCGC 96525 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 96464 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 96403 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 96342 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 96281 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 96220 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 96159 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 96098 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 96038 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 95977 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 95916 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 95855 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 95794 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAGATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116158-114787 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGIE01000040.1 Escherichia coli strain SI-P010 sequence040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116157 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 116096 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 116035 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 115974 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 115913 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 115852 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 115791 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 115730 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 115669 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 115608 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 115547 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 115486 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 115425 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 115364 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 115303 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 115242 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 115181 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 115120 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 115059 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 114998 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 114937 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 114876 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 114815 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //