Array 1 92292-93701 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCKI01000009.1 Moraxella catarrhalis strain 15/36/1 NODE_9_length_93740_cov_23.336951, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 92292 28 100.0 32 ............................ GATTTTTGATGCGCTTAATGGTGAAAAAGTGA 92352 28 100.0 32 ............................ TGTATAAATGAACATGTTCCCCTACATTTTCT 92412 28 100.0 32 ............................ TTTGACTTTAGTCAGATTATTAAATCGCTTGA 92472 28 100.0 32 ............................ CAGCATTTACAGCTTCATCAATACCAGTAACT 92532 28 100.0 32 ............................ ATCAATGAGCCAAAGAAAATCAACATCGCTGA 92592 28 100.0 33 ............................ AAGTGATGGCGAAAACTGGACAATCATTGATGT 92653 28 100.0 32 ............................ ATCTCCGCCCATGGTGATGACCTCACTTTTTT 92713 28 100.0 32 ............................ ATTGGGCAGTAAGATACCACAGATAACATAAG 92773 28 100.0 33 ............................ ATGCGAATAAGCGGCGATAAGTCAGCTTCGCAC 92834 28 100.0 31 ............................ TAAACCCAATACGAAAAGATGCCAATTTTAT 92893 28 100.0 32 ............................ GCCTGCATAGCTTAGGCGAGCTAGTGTACGGT 92953 28 100.0 32 ............................ TAATTGCTCCCCTAAGATTACCGAACAACGAA 93013 28 100.0 33 ............................ AGTCCATTGTTGAATTTTTGGTACATACTCGCG 93074 28 100.0 32 ............................ GTAAAAAGTCGGTAGGTAGGGCGAGTGGTGAC 93134 28 100.0 32 ............................ AGTTAAAAAAATAAGCAGTTTTAAGACTTGCT 93194 28 100.0 32 ............................ TATATAGCGATACAGCAGATTTTATTGCGATT 93254 28 100.0 32 ............................ AAAACCTTGACACGGTCAGGATTTAGCACATA 93314 28 100.0 32 ............................ AAGTTTTCAGCGATTGAGCCGAATGTCCGCCG 93374 28 100.0 32 ............................ TTTAGATGATGATGACTTTGTCAAAGAAGTGC 93434 28 100.0 32 ............................ AAGATGGTAAGATTATTAGTCTAACCAATCAA 93494 28 100.0 32 ............................ AGAATACAACTGCTTAGTGTATTACCCAAGCT 93554 28 100.0 32 ............................ AAAAGGCGGCCAATACTTTGATGCAGGAAACA 93614 28 100.0 32 ............................ AGGTGGGAAACAAAACAGGGCTTTGTGCAGTA 93674 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATATGGATATAAAGATAAGTATTCTGATAAGTCTTCACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //