Array 1 701-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVG010000071.1 Erwinia amylovora strain Ea4-96 Ea_4-96_contig_71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 700 29 100.0 32 ............................. CTATCTTGGGAGTTGATGGGTCAGTGGACATG 639 29 100.0 32 ............................. ATGCCCCGAGAACTCAAAACGTTGACGTTACA 578 29 100.0 32 ............................. CCTACGTCCTTTATCTGATGGCGACTAATAGG 517 29 100.0 32 ............................. CCGCAACCGGAACAACAACGACCACCGGACGC 456 29 100.0 32 ............................. TAACAGGAAACCCCATGGCAGAAACATTTATA 395 29 100.0 32 ............................. GGCACGGAGCGAAGAGTGGCAGACACCGATGA 334 29 100.0 32 ............................. CTTAGCTACCAGAACAAGCAAGCAGCGTCACG 273 29 100.0 32 ............................. AGCATGGGAGCAGACGACGGAAAAGCCGGCCT 212 29 100.0 32 ............................. CAAATGAAATCCTGAAATCCCAGGAGGTTCGA 151 29 100.0 32 ............................. TTGGGGCGGACATTGCTCCTTTGCTCCAGGTA 90 29 100.0 32 ............................. AGCGGCAGGCGGCCAGAGATCATCATGGCGTT 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : AGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGCCCACGAAAAAGGCAGGGGCGGTTAACTCCTTGCCTTATTCGAGTGACTTCAACCCTTACGGGCGTCCGGTCGGTTGCTCAATGGCAACGATAATCAGCGAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCAATAGTATTTCCTTGATATAAGAGCGTGCGCGCAGCATGTGGATGCTTTTGGGCTACTCTTGGCGGCCGCGTACCGGTCGACAAAAACCAACCCGGTTTACAGGCCGGTTTTTTTTTCGCCTGCACGCTGCCATTTCCGCTATATTCAAGATGTTCACTAAGCCGTTTACCCCTTATATCTGGCCGTGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAGAGTGGAAAAAAGTTGGTAGAATTGTAAGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : G # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 30684-28765 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVG010000035.1 Erwinia amylovora strain Ea4-96 Ea_4-96_contig_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30683 29 100.0 32 ............................. AAGTCATCAGCAATATCGCCAAGGTAGTCATC 30622 29 100.0 32 ............................. CCGGGTATGACTTTTACAGCACATTTTCAGAT 30561 29 100.0 32 ............................. TACCCAATGCCACCCAACAAATTTCTGATTTG 30500 29 100.0 32 ............................. CTCGTCGATATGCTTAACGCCGAACTCTTTAT 30439 29 100.0 32 ............................. AATATGAAGCACTCATCACGTCCTCTTCTATT 30378 29 100.0 32 ............................. CAGCAGTTGCAGCTGCCTGTCCCATGAGCATG 30317 29 100.0 32 ............................. GTTCTTACTTCGGATTAACTTAATAACGCTCT 30256 29 100.0 32 ............................. AAATCCGCCGCATGGCAGAGATGGATGGAATT 30195 29 100.0 32 ............................. AGTGCGGCAGTTTTGGCCGCTCAAATTGCAGC 30134 29 100.0 32 ............................. CGATTTGGCGGAAATGTCGGCGGAGATGCCCC 30073 29 100.0 32 ............................. CCATTGCGTTGCGTGACGTGGTTCGCGTTACT 30012 29 100.0 32 ............................. ATGGCCTAAAGCACCGCCTGGTGTCTCAAAAT 29951 29 100.0 32 ............................. AAAACAGCCCCATTCCGGGCGCTACTTCAGAT 29890 29 100.0 32 ............................. CTTGCGGACAGAATTTCTGACGCAGGCGCAAT 29829 29 100.0 32 ............................. CTATCTCGAAATGTGAGCCGCAGTCCCCAGCG 29768 29 100.0 32 ............................. CCATCGCCGGAGCCGGAGCCATCGCCGGATCC 29707 29 100.0 32 ............................. CCATATAGCAGATACGCCCAGCGCTTCCGCTA 29646 29 100.0 32 ............................. TCAATTGCATGCTGCCGGGAATCAAAAACAAA 29585 29 100.0 32 ............................. ATAAAAAGGCTCATGAATAACTTACTTCTGCC 29524 29 100.0 32 ............................. CGGCACACCCGCCTGAACTAACCAGCTCGCCC 29463 29 96.6 32 .................A........... GCAGCTGGCAATGATGACGAATGAGGATAGAC 29402 29 100.0 32 ............................. GGGGAATAAAGATATTAATCAGGATTTGCGTG 29341 29 100.0 32 ............................. TGCAGGCGCTGCAGGAGGGGGAGAACGTCACC 29280 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 29219 29 100.0 32 ............................. TCATAGTATTCCATCACTACGACACCCGTTAC 29158 29 96.6 32 ............................C AATGCCAGTACGAGCGCGCCTTAAATATCTGG 29097 29 100.0 32 ............................. TTGGCCACCAACAACAACGCATGGCATGTTTA 29036 29 100.0 32 ............................. CCAGAGGACAACTTTCCGCCTTTTCTCTGCGT 28975 29 93.1 32 .................A..........C AGGTGGCGGAATACGGCAACGAGTGGATAACT 28914 29 96.6 32 ......T...................... CGGATCACCTCTTCGCCCAGCCAGCTGTTCAG 28853 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 28792 28 79.3 0 ...........AC..A-....C......A | ========== ====== ====== ====== ============================= ================================ ================== 32 29 98.7 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : TCCTCTGATTGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCTACCCCCGCAGGATACCCAGCCGGTTGCCATCCCTGAACCTCAGTCTCTTGGCGATGTCGGGCACCGGAGTTCGTAATATGAGTATGCTGGTAGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGTGTGCGGGAAATGATTTGGCAGCAGCTGAATCAGCTCTACGAGAATGGCAATGTGGCGATGGTATGGGCCACCAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCGGTCTGACATTTAAAAACGGGTCTTTTTCACAGTAGATAATCTGGTAGATTTTGACGGGTGAAAAAATCCGTTATAATTCAGCTGGATGGATTTAGA # Right flank : ATGATATGTTTAATGCCAGCCCGGCCTCGGTATTGCCTCGCCGGACTGAGCCTGAATACATTACCGGCAAAAGAGGGTAACACTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGGCTGGTCGAATATCGCCCTGGGTGCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTAAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAATCCCTCTTTGGCTGGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 61041-60462 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVG010000035.1 Erwinia amylovora strain Ea4-96 Ea_4-96_contig_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 61040 29 100.0 32 ............................. CGAACGGATAACTGTCACGTTTTCTGGCGGGA 60979 29 100.0 32 ............................. TTATCGACGACCACTATACGGAAATGCAGGAA 60918 29 100.0 32 ............................. CCTCGTTAATTTATGATGCCTGGGGGTTATTA 60857 29 100.0 32 ............................. TGGTCAATTTTCCTGCTCAATGTCAGTTTTCA 60796 29 100.0 33 ............................. AATGCCAATACGAGTACGCCTTAAATATTTGGC 60734 29 100.0 32 ............................. TCTGCCATCACCAACAACAACGCTTGGCATGT 60673 29 100.0 32 ............................. TTGGCTCAACAGAACAACAACGCAATCCAGCT 60612 29 100.0 32 ............................. CTTTTGCCCGGTTGCGAAGTCCTGGAACTGGT 60551 29 100.0 32 ............................. TAATGGTTAAAGTGAGCGGTGGCGGAACGACC 60490 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : | # Right flank : CAGATAAACCGCCAATTGTACTGGTCTGTCGCTCAACCATGTCACCGATGCAGAGGTGTCTCCAACACTCATGGGCCGGAGAAACCAATGCATACCCCACTGACGGAGCTTATGACATCCGGTTGGGGCATGATCAACGGGGGCATACGATAATCAGATTTGTCCCCCTTCCCGGCTTACTGGCAAGAAGAATATGCAGATGCACCGGGCGCTAAATAGCCGTTCAAAATAGTAGATCACTTTGAGGGCACACAACCCGGATTATGCGATCTTATCAATCGCTGAATATCCCAAATCACCAACCGGACTGAGCGATGCCGTTCATAGCATCAATACCTCGTAGCAAACGCCGCCGGATGCAGAAAACCCTTCACAAAACCCGGGATAAAAATCATGCTCGCAGGCTTACCGCCATGCTGATGCTGCATCGTGGAGACCGCGTCAGCAACGTTGCCAGAACAGCTTTGCTGGGGCCGTTGTTCCATTGGCCATTAGATTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //