Array 1 125653-129521 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDEE01000009.1 Xanthomonas dyei strain CFBP7245 Xd-CFBP7245-G1009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 125653 28 100.0 32 ............................ AGACTAACAGTTTTCCGAATGCGTTCATGAGT 125713 28 100.0 32 ............................ GGCAGACATCCTGCCGAGCGAGTTCGCCGAAC 125773 28 100.0 32 ............................ GTCAGGTGGCCGATGAATTGCGCGACGAGTTC 125833 28 100.0 32 ............................ GTATGTGTTTGCCGATGTGTCTAGATTAGTGC 125893 28 100.0 32 ............................ ATCCGGTGTAAACGCTGCGGCAACGGCTGATA 125953 28 100.0 33 ............................ AGTAGTTCCGCCTGGTTTGGATCGCCGTCGAAT 126014 28 100.0 32 ............................ GCCTGGGTGTTGAGTAAGCTCGCGATCTTCGC 126074 28 100.0 32 ............................ TAAATCTAAGTACCTTTCCAGGAAGGAAACAC 126134 28 100.0 32 ............................ ATCTCGTCGAACTCTGGAACTAGGCCCTCATT 126194 28 100.0 32 ............................ CAGCACCGAACATGGCGCCTGACCATAAAAGC 126254 28 100.0 32 ............................ GACGACCAGCTCCGTGCCTGCCAAGCCGTGGT 126314 28 100.0 32 ............................ TTACGGGATCTGACGGGCCAGGCCCAGCGCGA 126374 28 100.0 32 ............................ GAGGCCGAAGATTTCGAAACAGCGCGCATTGC 126434 28 100.0 32 ............................ TCCAGCGCGGCCAATAAGGCATCGGCGTCTTC 126494 28 100.0 32 ............................ AGATATGCGTCCTGGTCGTAATTGAATTGGTC 126554 28 100.0 32 ............................ AAAGAACATCGGCGACCACCTGGCCGCACTTT 126614 28 100.0 32 ............................ TTCCGGGCACTTCGAATGCTTGCAGGGAATGC 126674 28 100.0 32 ............................ AAGATCACCCCGGGAATTGAGGCGGTCTACGC 126734 28 100.0 32 ............................ TGGATATTCCGCCCCTTAGCGAAATGCATTTC 126794 28 100.0 33 ............................ GTGGCTCACACCAGAGACCCGCGTGCGCACCAA 126855 28 100.0 32 ............................ ATCCGTAAGGATCGGCTCTAGGCTCGCGCTCT 126915 28 100.0 32 ............................ AAGCGCAGACCGCTGGAAAGAGCGTAGCAAGA 126975 28 100.0 32 ............................ AGTGGGCGTGACTTGGGCGGCTGCACCATCGC 127035 28 100.0 32 ............................ TCGACAGCTACCTGTTGCAGGTTGAGCCGTTC 127095 28 100.0 32 ............................ ACTATATTCGCAAGCAATCAGAACTTGCATTA 127155 28 100.0 32 ............................ CCGAGCCTTGAAGGCCTGAACCTGGCCCAAGA 127215 28 100.0 32 ............................ CAGCCGAATGCGGAGTAGGGGCGGGTCATGCC 127275 28 100.0 32 ............................ ACCGCGCAAGCGCAGGCCGTGGACTTGGGGCA 127335 28 100.0 32 ............................ ATGAGCAACATTGCAGTCATCGAGCAGGACAT 127395 28 100.0 32 ............................ GCAGGACTTCCCACGGCTGGTACTCGCCTAGC 127455 28 100.0 32 ............................ AACATGGATGCAGAACAAGCAATCGAAGAAGC 127515 28 100.0 32 ............................ AACATGTCCAATCTGCTGGTGAATGCGCCAGA 127575 28 100.0 32 ............................ ATCCTCAGCGCCGAGAAGCTGCCGCAGTTCCG 127635 28 100.0 32 ............................ GCTGGGGTGCCAATGCCGAAAACCGTGGGCAC 127695 28 100.0 32 ............................ TGCGGCCGCTCGGCAGGAAGCAGAAGCCCTCG 127755 28 100.0 32 ............................ AACTCCAGAGCCAACTAGCGAAAGGCAGAAGT 127815 28 100.0 32 ............................ ATGTGCAGGTCTCGTATGCCCCGTGCCCCGCA 127875 28 100.0 32 ............................ TGAGCAACCAGCGCAACGACAGCGCCGAGTGC 127935 28 100.0 32 ............................ TGGAGGTGATCGACTGCACCGGAATTTTGCTG 127995 28 100.0 32 ............................ TGATACATCACGGCCTCAGCTGACGAGGCGGC 128055 28 100.0 32 ............................ ACCCCGCCAGCTCAGGCCGTGGAGCTTGGGAA 128115 28 100.0 32 ............................ CTGCCCAAAGACGATTGGGAAGTGCATCTGGG 128175 28 100.0 32 ............................ TCGCCGAGCACCTGGATCGCGCCGACGAAATC 128235 28 100.0 31 ............................ GAGCCAGTCCCGGTCTCGGCTCCAAAAGCAA 128294 28 100.0 32 ............................ TACTACTCCTGTTCCACCGATTGGGTGTCGAT 128354 28 100.0 32 ............................ TCGCCCAGGATGCGAATCTGTCGCTCACTGTC 128414 28 100.0 32 ............................ TCAACGCCGTGAGCAGCGCCCCAGATCATCAA 128474 28 100.0 32 ............................ AGTTACGCCCACGACAGCAAGACCTCCGAAGG 128534 28 100.0 32 ............................ ATGGACGCCAGCTCGGTCCGCGCCCTGGTCGA 128594 28 100.0 32 ............................ TGCTCAAGCCCCCGGCTATCGCCAAGGCTGCG 128654 28 100.0 32 ............................ AACGCGGTCCTGTACGAAATGGGGCGCGTCAC 128714 28 100.0 32 ............................ ATTGACGAGGACTTGGGACCAGAGGATCTGGT 128774 28 100.0 32 ............................ AACAAGGTCTGCCACGAGGGAGGCCTTGATGG 128834 28 100.0 32 ............................ AGACCGACATTCATTCCGGTTTATCGTCTCGC 128894 28 100.0 32 ............................ CAGTAAAGCAACCGTTTTCCGCTGGTTGGGGC 128954 28 96.4 32 .........T.................. AGTCTTCGGCTAGGCAGTCGTTGACACTCGGC 129014 28 100.0 32 ............................ TGCGAATGCAGGCGGATCAGTACGACCATATA 129074 28 100.0 32 ............................ TGACCGATGATGACCTGCGCCGGCTGTCCGAA 129134 28 100.0 32 ............................ GAGTACGGCCCAACGCATTGGTGCCTCTACAC 129194 28 100.0 32 ............................ CGGTGATTTCGCCGGCCCAGCGCCGACCGACC 129254 28 100.0 32 ............................ AGAGGTCACCCACATGCTCGCCGCTGCGTTGC 129314 28 96.4 32 ............T............... ATGCGCGCCCGCTCGGCGGCGATCAGCGCGGC 129374 28 96.4 32 ............T............... TCGAGCACCGCCTTCGCCTTGGCGTAGCTCTC 129434 28 96.4 32 ..................C......... TATCAGCGGTAACGCGTGTTGAGTGGTCGTGA 129494 28 82.1 0 ...........T.C...........CCG | ========== ====== ====== ====== ============================ ================================= ================== 65 28 99.5 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : CCTACAGGCGTTGATGGCCAGCCCCTGGCTTCACGGCCTACTCGACCATCTGGTGGTGTCGCCCGTGATGGCCGTTCCTGCCGATACCGAGCATCGGCGCGTCACACGTGTGCAGGCCAAGAGCAGCCCGTCGCGTCTGCGTCGTCGCGCAATGCGGCGTCATGGGATCGATGCCGAGGCAGCGACACAACGCATCCCGGATGCCGCAGCCGAACAATTGGCACTGCCCTTCGTGGTCATCGGCAGCCGCAGCACCGGACAAGCCTCGTTTCCGCTGTTCATTCGCCACGGCCCCCTCTTGTCCGAGGCGAAAATCGGCGGCTTCAATAGCTACGGCCTGAGCCAGGAAGCCACCGTGCCCTGGTTCTGACCCTTTTTTATGGTCGGCAACAAGCTCGCTTTAGAATCAACCACTTGGCCGGCACCCCGTTGAAAGGGTGTCGGCCGTTGTTTGATCGATTTCGCTATAGATATCAATACATTGGAGGACTTTTTCTCTT # Right flank : GGCTCGCAGATGCGCCCGGCGAGCTCACTGCCACGTTGGGCCTGAGCGAACGCAGGCTAAGGCGATGCATCGCTTAGACGCGCCGCCGTGCTGCCACAGGGCTTACTCGCGCCCGTACAGACCCAGAAACATCTCCACCGCCGAGGCGGCCACCTGCGCCTGCTGGGCGGGCGACAGCGGCGGCTGGCCCATCGCCAACTGCGGCCAGAACGCGAACCCCTTCACCAGCGCCTGGAGCTGTTGCGAGGCGAAGTCCGGATCGACCTCGGCCAGCCGACCATCGGCCAGCGCGGCGCGCAGCCAGGTGGTGGTGCCCTCTTCCTTGCTACCCAGCTGCGCCAGCAGCGCGCGGGCGCGTTCGGGCGAGTGGATGCCTTCGGCAATCGCCACGCGCGACAGATCGATAAAAGCCGCATCGTCGAGCAGCCGCAGTTTTTGCTGCAGCAATTGCGTCAACTGCACGCGCAATGATTGATCGGGGCGATAGGGCAGACTCACCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //