Array 1 7895-6739 **** Predicted by CRISPRDetect 2.4 *** >NZ_WAAX01000065.1 Dickeya dianthicola strain NY1538B NODE_65_length_26993_cov_12.1968, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 7894 32 100.0 34 ................................ AGGGAAACCCGGCGAGGCACGGTATCGACTGGAG 7828 32 100.0 33 ................................ TTCAAATACAGTTCACATGCAAGATGCAGCTTC 7763 32 100.0 35 ................................ TTGAAATCATGGACTTCGACAACACCGCATATCAA 7696 32 100.0 37 ................................ GATATCAGTCTGACTGAAGCCAGATGGGTCACCAGCC 7627 32 100.0 35 ................................ AGTATTTAGTGAGGCTGAATTCAGCCCAGATGTCT 7560 32 100.0 34 ................................ CCAGACATCGCTGAAGCTGCGCTGAAGACCGAGA 7494 32 100.0 34 ................................ TATTAGAAAAGTCCCTTAATTAATCCCTTACGAA 7428 32 100.0 34 ................................ AATACCATGACCCGTTTGGTAAACAGCATCACTG 7362 32 100.0 33 ................................ CAGTGCCCGTTAATGTACGTAGTCACACGGTTG 7297 32 100.0 35 ................................ TTTTTGAAAATACTGCTTGCTTCTTTTTGTGAGTG 7230 32 100.0 34 ................................ TATGACGCTGCTACCGCGTACTACAACGCGAAGG 7164 32 100.0 34 ................................ CAGTCCAGTCGGGGGACACGACGGAAGCGACCTT 7098 32 100.0 34 ................................ CAACAAGTGGGACATTACAAATAGCAGTGGGCAG 7032 32 100.0 34 ................................ CGCGCCATCCTCTCCGCTCCCGGCAGACGTGCGC 6966 32 100.0 34 ................................ TCGTTAATTCTGTCTGGATGTGCATCCTTTAACG 6900 32 100.0 33 ................................ TATCTGGGCAGGTAGCATCGATGGGGTAGCAAC 6835 32 100.0 34 ................................ ACCGATTGCGCGACGATCCTGAACATACTCCTTG 6769 31 81.2 0 .....................AC-....C.TT | ========== ====== ====== ====== ================================ ===================================== ================== 18 32 99.0 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : AACAGACAACCGGAGCAGCCCCTGTATGATGGTACTCATCACTTACGATGTATCGCTGGAAGACGCCAACGGCCCGCGCCGCCTGCGGCAACTGGCGAAAATCTGCCTGGACTATGGTGTTCGGGTGCAATACTCGGTATTCGAATGCGACGTTGATGCTGCACAGTGGGTGGTTTTACGTCAGAAGCTGCTTACCACCTACGACGAACGGGTCGACAGCCTGCGATTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTTGAACACCACGGTGCCAAACCGGCGCTGGATATTTTTGGTGATACCCTTATCGTGTAACACTGCGCCAACCCCCGGTGCTCATCATTTTCCCGGCCGGTTGGCGCAGCCTTATACAATTGAATCATAAATGGTTTATTTCTTCCCTCCATCACTGCGCCCCCCAATTCCTTCTCGCAGACATTACGTTGGCGTTATCTCCACGCTGACGCTATGCTACAAGCGCCTTGCCCGCAAGGCA # Right flank : GATATCGTTATTCGCCGGTTAATGCTGCGAAGGCGGTTCCGACTCAAACAGCGGCAACGGCTTGCCGATGATGTAGCGCTGGCGTAAATGCGCGGATAACACATCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACATCCCAGTTCCACAGCCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCGCCGACAAACCCCAGCACCGCCGCCGACCGCACGTTGGACTCCATCTGGTACAGGCTGAGCGCCAGAAAGGTGGGAAACGACTGGGTGAAGATGCCGAAGCGGTGTTTTTGCAAGCTGTTGGCGCCGACCGCGCCAAGCCCGCGGCTAGGTGAGCGTTCTACCGCCTCGTGCCCTTCCGCGTACAGTTTGCCGAGCAGGCCGGTGTCCTGCATCAGGATCGCCAGCGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACAAAAATCAGCCCCCAGATAGCCATGTCGATGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 562-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_WAAX01000115.1 Dickeya dianthicola strain NY1538B NODE_115_length_10739_cov_12.0409, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 561 28 100.0 32 ............................ GCATCGTTCAAACACACGCTATCTCTGTTCGC 501 28 100.0 32 ............................ TTGTTCTCGGTGGCCGCGGCCGCGGCGTTAGT 441 28 100.0 32 ............................ CGGAAGTGCGTTTCGTCTGCCAGCACGCGCAC 381 28 100.0 32 ............................ ACATCCCATTTTTTACTGCTGCGCTGCTGTAC 321 28 100.0 32 ............................ ACTTAAGATCCCACGGCCATACATCTGATGGT 261 28 100.0 32 ............................ TTTCTTTGTGCTCAAATCTGGCACTTCGTTGA 201 28 100.0 32 ............................ TGGACGGTTGCACTCTCTGCGCAGAGCTTGAC 141 28 92.9 32 ...........AG............... AGGTGCAGTCAGTGAAATTAGTAACAGAAACC 81 28 92.9 0 ........T..T................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.4 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCGCTGGAAGAAGCCGGCTGGCGCAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCAGATGGTGCAAAGCACCGCACTGTGCGCCGCGTGCAGGTAAAAAGCAGCGCCGAACGCCTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACCGCAGATGAGGCGGCCACGCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCATGGCCCGTTGCAGGATAAACCGGTCGCCGGGGTATTCTCCAGCTACGGGTTAAGCGCCGTCGCCACCATCCCGTGGTTTTAACCCTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAAGGTTTTCCCGGAAAAACGGTGGTTTTTCTTTAACAATCAGGCAATAAGCGATTATTCGCTACA # Right flank : ACATTTGATGAACGGGCGGATCACTGGACACCTGTTCACTGCCGCATAGGCAGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9277-10685 **** Predicted by CRISPRDetect 2.4 *** >NZ_WAAX01000115.1 Dickeya dianthicola strain NY1538B NODE_115_length_10739_cov_12.0409, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9277 28 100.0 32 ............................ TCCGGTGCTCTGAGTCGTTCGAGTAGCTGGAA 9337 28 100.0 32 ............................ TATAAAAGAGAGTCGAGCGGTGAACCACATCG 9397 28 100.0 32 ............................ GAGAGGACTGAGAGAGCGTACCCACGCAATCC 9457 28 100.0 32 ............................ CATATCCATACCCCACCACCCCGGCGCGCAGT 9517 28 100.0 32 ............................ GTATTCTGGAGCGCCACCAGTGGCGTGGAATG 9577 28 100.0 32 ............................ AGGAAGTTGGCGTTGAACTGCGTGGTGATCCT 9637 28 100.0 32 ............................ TGACGGCGGGGATCGAGGTCGGTGTGTTGCGC 9697 28 100.0 32 ............................ GTTACGTCGCCAACCGGCGACGCTTGGAGTTC 9757 28 100.0 33 ............................ TCCTCGGTCAGACGCTCATTCTTCGGGTCATCT 9818 28 100.0 32 ............................ GTACGGTGCCCTGAGTCGTTCGCGGTCACTCG 9878 28 100.0 32 ............................ GAGTGTACAGTGATAGGTTGACGGGTAGATTC 9938 28 100.0 32 ............................ GCTAGGGAACTAAGTACAGTACACGAACTCAA 9998 28 100.0 32 ............................ ACACCCGAGAGACGGCACGCACCCACCAGGAC 10058 28 100.0 32 ............................ TCCTCGTTCGTTTCTCTCTCTCTATAGTGACA 10118 28 100.0 32 ............................ ACAAGGACAAACAGCGCGCGGCATTCAGTACT 10178 28 100.0 32 ............................ CGCACACCTCCCGCACACCTCCCGCACACCTC 10238 28 100.0 32 ............................ CGAACGAAAGGCCACAGGTTGCTGCGTATGGT 10298 28 100.0 32 ............................ ATAAATCCACCGTGCCGGGCGGTCTGGTAAAG 10358 28 100.0 32 ............................ TCCAGATTGCGTTCAGAGAGCTTCGTAGCCAG 10418 28 100.0 32 ............................ TGTACCTGCACAGCACCGACGTACAGATAAAT 10478 28 100.0 32 ............................ AGCGGCGGCATTGAAGTACCGATGAATACAAC 10538 28 100.0 32 ............................ TTTAATGACACGGCCAGTGTTAATGTTATTCA 10598 28 100.0 32 ............................ TTAACGGACGGCTTAACGCGTTGGCCGTTTGG 10658 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ATGCTGAAGATAATAAATATTGGCGCGTTTGGAATGCAGAATAGTTTTTAAATCCGACGGGCTAAATACGTTATCCATAAAACGGGTTCTCTGTCGTAGTAATAAAGCAACACCACCCGCGAAATAACACGCAGGCTAATAATTAATTGGAAAACACGGATACCCTAAATAATTCGAGTTGCAGGAAGGCGGCGACGCAGCGAATCTCCGGGAGCTTACTCAAGTAAGTGACCGGAGTGAGCGAGGAAAGCCAACGCACCTGCAACTTGAAGTATGACGGGTATAATACACTGGAAAATAACGAGAATTAACCTATCACAACCCAACCGGGAAAGTGAATGACGCCGAAAATACTTTTCTTATTTTTATACCCTTTTTTTCAGCCCCCTTTTTCAGCATTGAAAAATCAATAAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCACCAATTGCGGGTAGGAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : ACGACAAAAACCCGGCAGGAAATGCGATCTCGCGTTCACTGCCGAGTAGGCAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //