Array 1 39557-40910 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDAM010000006.1 Streptococcus lutetiensis strain PA11385KF6 KS10_NODE_6_length_94283_cov_711.266_ID_571, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 39557 36 100.0 30 .................................... TTTCTCGAGCATTGTATATGTTGTTTACAT 39623 36 100.0 30 .................................... AAAAGCCTTGAAGAATACGCTCAAAGCGTT 39689 36 100.0 30 .................................... GGTAGCATTAATGAAAGCATCATCAATCAT 39755 36 100.0 30 .................................... GAACCACTAAATCCAATAATTCTCCGTTTT 39821 36 100.0 30 .................................... AATTGTAAGCCATGTGTATATCTCCTTTAT 39887 36 100.0 30 .................................... AGACTTTTTGGTTTTGTGGTCATAACAGCA 39953 36 100.0 30 .................................... TATCTTTGTCAGTATTGTTTGGCAAATGGT 40019 36 100.0 30 .................................... TATCAATGCGTTGAACCTTATTTGTGCTTT 40085 36 100.0 30 .................................... TAAAAATCAATTAATTATTAATGAATTACT 40151 36 100.0 30 .................................... CCATCATTGCATGGCTATCAAGCTGGATTG 40217 36 100.0 30 .................................... ATACTATGCTAGTGTTTCAATTCACTTTGT 40283 36 100.0 30 .................................... AAACATCCAAATATATATACATATGAAACT 40349 36 100.0 29 .................................... ATAGTAGATGATATCTGCGCACTGCATCA 40414 36 100.0 30 .................................... TTTATCAAATTGCATTCGGTGCAGATGAGA 40480 36 100.0 30 .................................... CAAGTACTATTAGTATCAAATCGCTGCACT 40546 36 100.0 30 .................................... TGTCTCTCGGAACTTGTGGTTTGTTTTCTG 40612 36 100.0 30 .................................... CCGACGAAGAAGCCGAAGATGGTGACGACT 40678 36 100.0 30 .................................... TGTAGGCGCATGTAAAAGATTATCTCCGTT 40744 36 100.0 30 .................................... GTTGAACGTTTAGACGCTCGCGGGCAGCAC 40810 36 100.0 31 .................................... GCAGATTCTTTGGCTTTTGCCCTTATTTTGT 40877 34 83.3 0 ......................--C...ACC..... | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 99.2 30 GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Left flank : ATGGATGATTACCTTGATTATGCCTCATTTATAAGAATTTGTCAGGTTATCACAAGAATGGCTGATGAGTTTCCAAATTTTTATTGTACGATTTTTCCGTCAAACGAGAGCTACTTGTATGTGACTAAAGAAACAATAGAAAATATTACCATTGTTTCAGATTATATTGAATCTTTGTTTGATCTTGATTTTATGTATGAAAGGTTTGTTGGAAGATATCCATCCAACAATGTACCAACAAAAAAAGAATTTTTAATTCTTTTACAGAAGAATGCAAGTTATTTATTTAGTGAGCAAATTTCATATGTGAGTTTAGGAATTTCGGATATGGTAGCTATCAAGATACTAAATAGTTTATATCACTATGATAAGTCAGTTAAATATCCAATTTCAGAGATAAATCAGCTTGAAATAAGCTTTCTTAAGGATAAAGATTGACTTTTAGGCTCAATGAAATTATAATTCTTGTAGAGTATAAAGACCCAAAATGACGATTTGAG # Right flank : CCCCACCTAGTTCGTCACTGGGTGGGGTAATCTATGTGGGTCATAGGTTTGCAGAATTGAGTTTTTATTACCTTTGATTAATGATAACGCTTTCTGCAAAAATTGTAAAATGATTTGCGGTAGCTGATTTTAGCGATATTTATCGTGCCTAGAAAACTTTTTATAGCACCAGTGGTGTTTATTTGTTATAATAGAAATAATGAATAATTGTATAGGATTATAGATAGATGGATATTCAAGAATTAAAAAAACGACAAGAAAAGATTCGCAATTTCTCAATTATTGCGCATATTGACCACGGAAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAAACTGTCTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGTATGGATTTGGAACGTGAACGTGGTATCACAATCAAATTGAATGCGATTGAGTTGAATTACACAGCTAAAGATGGTGAAACTTACATTTTCCACTTGATTGACACACCAGGGCACGTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 34570-34933 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDAM010000018.1 Streptococcus lutetiensis strain PA11385KF6 KS10_NODE_18_length_35525_cov_763.576_ID_1602, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 34570 35 94.3 31 ...A......................G........ CATAACTTGTGAAAGTTGTAGGGAACATTTC 34636 35 100.0 31 ................................... CTGAAATTACAAAAGAGCTCGCTAGCTACAC 34702 35 100.0 30 ................................... TGATAAATACCATGACCATTTACAGATCTA 34767 35 100.0 31 ................................... CTCAAATGTTGCCATGTGTCAACATCTGGAA 34833 34 88.6 31 C..TA..........-................... ATATTCCGAGTCGTCTCGGAATTTAGATTTA T [34845] 34899 35 88.6 0 ...TA......C..............C........ | ========== ====== ====== ====== =================================== =============================== ================== 6 35 95.2 31 ATTCGCTACCATGCTATTTTGAATGGTTCTAAAAC # Left flank : TGGTTATAATGAAATTTATTACGAGCTTGGACCTACTGACGGTAAGGGTTTCGGTGATATAGTATATAAGCTTGAACAATATGAGGAAAAATTACAAGATTATCTAGTCGAAAAAAAAATAAAAGACGACTTTTATCGTAAAACTGGTTATCATTTGTCTCAACCCATGGTTATACCTGCTGAAGAGATGGAAAGAGAAACTAAAAAATTGATATCAGATTTTAATACTGATTTTATAGAATTCCTAAAATATCATGATTTATACTTGTCTAATTCTGAAATTGATAAAGTTATAAAAATTATGTATACGTATAGCAACGCCAATAACGTCTATTTAAGCTCTTTGATAAGGGATAAAAACCTCAAAGAATTGCGACAAAAAAAAGAAAAAGATTTCTCTGAATTATTTAAATATAGCTCACTATGGGAAATGAATTATAAAAGCTTAGAAGAAAACAACACCGACGCCCCACCCGATAACGATTAGGCGGATAACATTC # Right flank : CCTCAAACTCTAAAACCTTTATAGCCTGCCTGCTGTAGTTAAGAGAAGAGGTTACAAATGGCAAATATTAAGAAAATCACAAAGAAAAACGGTACTACTGTGTACCGTGAACAAATCTATCTAGGTACTGATTACATGACTGGGAAACAAGTCTATACAACTATTTCAGCACCTACAAAAAAAGAACTCAAACAAAAACGTGAGTTCAAAATAAACGAATTTAAAGAAAATGGATACACGCGCCATAAGAGTGTGAGTGTTAAGAACTACCGTGAACTAAGTGAACTGTGGTTAAAAAACCATAAGTTAGAAGTTAAACCACAAACATATAGCCAAACAGTTAGCGAACTAAAAACGCACCTTTTACCTGTGTTCGGTAATATTAGGGTAGAAAAAATCACACTCCCAATGGTTCAAGTTTTCGTTAATAAAATAGCTAACAACCCTAACCTTGGTTCGGTATCTCTAAAAATAATCTTGTCTATTAATAAGCGTATTTT # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCTACCATGCTATTTTGAATGGTTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //