Array 1 304394-305202 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXLD010000027.1 Listeria innocua strain F6213 NODE_1_length_1443927_cov_52.1466_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 304394 29 100.0 37 ............................. TTGTTCTTAGTTGCATAAACTACGGGCTGGTTTTCGC 304460 29 100.0 35 ............................. TTCACAACAGAATGTGGGAGGTCATACTGTTCACA 304524 29 100.0 37 ............................. CCACAAACTGTCTTCCTTTCAGTTTCAAACACTTAAT 304590 29 100.0 36 ............................. GGCACTAAGCTATCTTGGTATGATAATCGGAAGGGC 304655 29 96.6 38 ..............A.............. TAGGCAGCGTCAGCAATAGTGGTGAAAACAGGTTCTAC 304722 29 96.6 36 ..............A.............. TCGCGATTCATGTAAATCATTCGATAGGTCTGTTTG 304787 29 96.6 36 ..............A.............. TGACAAAGTATCCGTGCACCAATTCCCCGTTATCTA 304852 29 96.6 37 ................A............ ACAAGACGCATACAACTTTAGAGGTGAGCGAAATCGA 304918 29 96.6 34 ..............A.............. GTGTACTCTAATGCCAAATTTAATTCCTCCTATT 304981 29 93.1 34 ..............A...A.......... GCAATACTGAAAGCTTGGCACGGAAATTCTCCTG 305044 29 96.6 36 ..............A.............. TCGACATAACACATATATTTAAAATCATTAAAACTA 305109 29 100.0 36 ............................. GTTTTAGCCCGTGCTGTTAAAAAACTGACTATCAGT 305174 29 75.9 0 A.....AG.......CA.A....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 96.0 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGTGTACGTGCCACAACCTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGTTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGGAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAAGTCGACAGAAATAGCTCTTTGAGGTAATATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTCCACCACCATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGTTTTTTCTCAATCATTAAACTCTTTCAAAACATTCTCTTTAATTTCAGTATAATGGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCACTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTATCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCAACTTCACTTATGGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTGTTTTTCACT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 320909-321783 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXLD010000027.1 Listeria innocua strain F6213 NODE_1_length_1443927_cov_52.1466_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 320909 29 100.0 37 ............................. AGACGAACAGCTAGAAGCATTGCAAGAAAGCGATTCT 320975 29 100.0 37 ............................. CAAGTAACAGGAAAAGGACAAGTATATCTATTAAATA 321041 29 100.0 36 ............................. AGAGATTACAGAGCAAAAGGATGCTTTAATCGCAGA 321106 29 100.0 36 ............................. AATGGTATATTTTGTCAACAGGTTTATCCTATTTAG 321171 29 100.0 37 ............................. TATGTGATGTTACATATTCTTTTATATGGTTCACGTT 321237 29 100.0 36 ............................. ATGTCTGCGTGCCCCAGTCTCTCTTGGATTACTTTG 321302 29 100.0 37 ............................. ATCTTGAACCGCTCCCCATGCTTTTTTAGCGCCATCA 321368 29 100.0 34 ............................. TTCCGTTTCTCTCTTTTGTATTGCCTTTCTTCAT 321431 29 100.0 35 ............................. TAACAATGAAAAACGGATTTACAAAATTAGCGTCC 321495 29 100.0 35 ............................. CAATAATGAAGTGATTTGTTTATCACCACATGCTA 321559 29 100.0 36 ............................. TCAAGTGGAAATCGAATATAAAGATAATCATTTTTT 321624 29 100.0 36 ............................. ATAAGAACAAACGGAACAAATGATATTTTAACGCTT 321689 29 100.0 36 ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 321754 29 86.2 0 ...............C..A....A....C | C [321777] ========== ====== ====== ====== ============================= ===================================== ================== 14 29 99.0 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAATTCCAGCGCTTTTAGTTAAGTTAAGTATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGTTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCACAACCGCCGGCAAGCCCTGCTTCACCAAAATTCCCTTAGAAGAAGTCGCCCCGCCAAACAGCGCCGCCACAACGACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAATCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCAGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAATAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //