Array 1 417-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZHK01000019.1 Moraxella catarrhalis strain COPD_M49 NODE_20_length_454_cov_0.807339, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 416 28 100.0 32 ............................ TTAGGCAGTAAGATGTTACAGATAACATAAGC 356 28 100.0 32 ............................ ATCTATATAATCTACAATGACTTTTCCTGTGT 296 28 100.0 32 ............................ AAAGTATTCATCCAGGGTGTCTACATGATTTA 236 28 100.0 32 ............................ GTGATATTAACGCTTTGCAAGCTGATAAAAAT 176 28 100.0 32 ............................ AATTATCATCCAGAAAAGATCTTCTTTAGAAA 116 28 100.0 33 ............................ AGATGACCAACCACCGCTTGCCAAATTTTCCAA 55 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : GAAACATTCTCTGTATTCGTTCATATCGCCCCCTTGA # Right flank : AGTTATCAACGACAGCATATTTTTGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 63308-61165 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZHK01000003.1 Moraxella catarrhalis strain COPD_M49 NODE_3_length_364475_cov_27.1772, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================ ================== 63307 28 100.0 32 ............................ TTTTATGCAAATTTAATGATGTTGTTGTCAAT 63247 28 100.0 32 ............................ TTCAGTTCTTTCACTTGATAATGAACCTGCTT 63187 28 96.4 32 .............T.............. CCCATCTGACGACTGCGTTTCATGTATTGCAT 63127 28 100.0 32 ............................ GCTAAACAACACAATATTGACAACATGTCAAA 63067 28 96.4 32 .............T.............. TATAAAGAACATATCTTATCAATTCCCCGTGA 63007 28 100.0 31 ............................ TGTATTTATATATTAGATGATAATTCAAGGA 62948 28 100.0 31 ............................ TTGACCCCCGCCCACTAGCCCCAGTTGTGAG 62889 28 100.0 32 ............................ GCCGACAATACTACCTTGATAATCATTAGCCA 62829 28 100.0 32 ............................ TATCGCTAAGGCAGGGTTTAAATACCATTCAA 62769 28 100.0 32 ............................ TAAATTTCACTTACTACAAAAACAAAAAGGGA 62709 28 100.0 32 ............................ ACCCCAAGATGTAGATTTACCCCTTGCCACCG 62649 28 100.0 32 ............................ AGTATAGTGATTTTCGCCATTGACACACTGGA 62589 28 100.0 32 ............................ GCTGATGACAATCACCAATTTACCATCACCGC 62529 28 100.0 32 ............................ TGTGCGAAAATCCACCTTGACATTTGGAAAAT 62469 28 100.0 32 ............................ ATTCATTGCCAAACCTTTGATTGGTACAGTCG 62409 28 100.0 32 ............................ CAGTCGAATTCACCATGCCAAACGCCATTTTC 62349 28 100.0 32 ............................ CTAAATTCATGCCAAATAATACCCCCTGTACG 62289 28 100.0 32 ............................ AATCTTGAACGAACGCTAACAACAAACAATCA 62229 28 100.0 32 ............................ GCTCAACACTTGTCGCCTGTCTGCTTTGGGTT 62169 28 100.0 33 ............................ ATTGTGGGTTAATGTCAGATTTTCCCTTGAGTT 62108 28 100.0 32 ............................ GTATTTAATTTCTACAACTGCGCCTGATAATT 62048 28 100.0 32 ............................ CTAAATTCATGCCAAATAATACCCCCTGTACG 61988 28 100.0 32 ............................ AATCTTGAACGAACGCTAACAACAAACAATCA 61928 28 100.0 32 ............................ GCTCAACACTTGTCGCCTGTCTGCTTTGGGTT 61868 28 100.0 32 ............................ ACAGTTCATTATTACCACCTGTGCCGACATTC 61808 28 100.0 32 ............................ AAATCAAGCCGGTGGTGTTGATTTAGTGAGCA 61748 28 100.0 32 ............................ AGCGATTGAAAGTAATATTAATAGCTTTAATA 61688 28 100.0 48 ............................ ACAATCAACGCCTAGCATTGGTTGATGAGTTTACCAAATTGGTTGCAA 61612 28 96.4 32 .............T.............. TTTGGTGATTACAAGCTACCGTCCGAATTTCG 61552 28 96.4 32 .............T.............. AACTCGGCAGCAATACCGCCAAGACATGTAGG 61492 28 96.4 32 .............T.............. AGCCTGAGCTTGTCGCTGATGTGCTTAATCAC 61432 28 96.4 32 .............T.............. GACGCAAAGATTGCAATCAGATAAAACAAAAA 61372 28 92.9 32 ...........TG............... TAATCTTGAACCTATTTCATAAATAAACGGCT 61312 28 100.0 33 ............................ AACTGTGTTAATCCGCTCAGACAAGCTTTGATT 61251 28 96.4 31 .............T.............. CTTACAATTTTTTTGTCAAAATGCTGCATAA 61192 28 92.9 0 .............T....T......... | ========== ====== ====== ====== ============================ ================================================ ================== 36 28 98.9 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TCGCATTGCGGCTTGGGTGATGGATGTCCCTGTGCCAAGCAAGATGACTGTGGTATTGGCGATGGGGATATTATAATAGTGGTTTTCGTATTTGGTTTCGGTGAGATACAGGATGCGCCCGTCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATACATTGGCGCGCTTGGAGTGCAAAATTGCCTTAAGATCCGTGGGTTTGAGCGTATCCATGACGTCAATTTCCTTAATGATGAATTTAATTTAATCACACCCATTATAGCCTGTCAAGCGATGATGCGACCAAATTATAAGCTTATATTATCCATCTGCCATATCAGTTATGCTATACTAAATTTGCCATCAGATGATGATGGGTGTAAAAAACCTTTATTTTTTCAACTATTTAAAAACTTAATAAAATCAATAAGTTATAACTAGTCAACTTTTGATTGGATAAAAAGGGTCAATCCATCATAAATGGCTGTTATTTCTTAATTTTTTCGGTTATAATTACT # Right flank : TTTCGTTCTACAACTACGCTGATTATTTAAAATTTTTGTACCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGTAATTTATGACCGAGCAAACCACCGAACAAACCACCATGGAAGAGATTACGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCACAGCCAAATCCAAGCACTAGAAAGTGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTCCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //