Array 1 280054-279107 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRSD01000002.1 Thiocapsa imhoffii strain DSM 21303 scaffold0002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 280053 29 100.0 32 ............................. CTGATGTCGGGTTCGTCGATTGGCAATCCGGT 279992 29 100.0 34 ............................. GTGAATGGCCTAATGCTGCTTGTGCTCCTGATGT 279929 29 100.0 32 ............................. ACCTCTACGCGAGAATCGTTGCCGATGGGTGA 279868 29 100.0 32 ............................. CTCCAAGAGCACTATGACCGGCTGTATTTCAA 279807 29 100.0 32 ............................. TTCTTCTAATGTTGGAAGTTCAGATGAAGGAT 279746 29 100.0 32 ............................. ATTCACATTGCACCCCGGAATAGGAGATAAGC 279685 29 100.0 32 ............................. TGGGTGGTGCTGGTTAGACGAGCGGTGGGAGG 279624 29 100.0 32 ............................. CTTCTGTTCTAGTGCAAGACTGGTCCTGATTT 279563 29 100.0 32 ............................. CCCATTTCGGCAGACAGCGGCATGGCACACTG 279502 29 100.0 32 ............................. GCGCTTGCCGAGCCGCGCACTGCCGAGGTCTT 279441 29 100.0 32 ............................. CCCATTTCGGCAGACAGCGGCATGGCACACTG 279380 29 100.0 32 ............................. GCTGATACGCTCAGCAACGCCGCTAAGCTCAG 279319 29 100.0 33 ............................. TACAAGGGCAAGACCGTCGCAGCGGTGGCTGCC 279257 29 100.0 32 ............................. CCTCTTGCCCAGTGTTCGCTTGTCCATCTGCA 279196 29 96.6 32 ............................T ACAGTGGGCGTGGAGGCTCGGCAATGGCCGAT 279135 29 89.7 0 ...........C..A...........G.. | ========== ====== ====== ====== ============================= ================================== ================== 16 29 99.1 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : AAGATCATTCCCATGATCGAAGAGGTCCTGACCGCAGGTGGTCTGGAGCCACCTAAACCCCCGAAGGAGTCGGTCCCCCCGGCCATCAAGGAACAGGAGAGCATGGGCGATGTTGGTCATCGTCACTGAGAACGTCCCGCCCCGCCTGCGCGGGCGTTTGGCGGTCTGGTTAGTAGAGGTCCGGGCAGGTGTCTACATCGGCACTCCATCGAAACGACTGCGTGAGTTGATCTGGGATCAGGTTTGTGAAGGCGTCGAAGATGGAAACGCTGTCATCGCCTGGAACACCAATACCGAATCGGGCTACGATTTTGCCACCGTTGGTAAAAACCGCAGGATCCCGGTCGATTTCGATGGTCTCCGATTAGTCAGTTTTCTGCCCCCAGATGAACACGCAAACGCTCCTTAACAGTTTAGACCTACCCCATCGAAACAAGGATTTTTTTGGTGGAATATTACGCGCACAATTTCATTAATAAGATCAGCAGGATGCTGACAGT # Right flank : CAAATGAGTCTCTGAGGGCAATGAGAAGATGGTGTTGCCCAAATTCGAAGGCGACCGCGAGACGGGCAACACGAACTACACGCGATCAATGAGACCAACCACGCTTCGTGACGCGGACAACAACGCCATTCGTTTGTCCCCAATCGCTGTGGCCGTTACTGTGGATAAGCTGTGCGGGCAGCCCTTAACCCAACCTGAAGTCAGCATTTTCTCCACACCGGTCATGAAATGACCAGTCTGGCAACACCAGGGGGCTACAGCGTGTCGAGTGCGGACTCCGGAAGGTGCTGGGTGCAGCACGGTGGCAACAGGATCGACTCACGGCTCGGCCTGTTCAAAATGTCTCGACCACGCCGAGGAAGCTCGCAAACCGTGGTTTGCCATGGACCGTGCGACCATGAAACTTGAAAGTGACCACCTCTCCGATCAGTGGCGGCGCGTCGCGTTGGGCATCCGTGAACCCCGTACCGAGTTGGAAGCGGGTGCCGTCCGATTCTTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 126183-122738 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRSD01000012.1 Thiocapsa imhoffii strain DSM 21303 scaffold0012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 126182 36 100.0 34 .................................... ATTTGCATTTTTGTTCTCCTAAATAGGTTAATGG 126112 36 100.0 33 .................................... GGATAGACCACCCCTACAAGGACTTCAATTGGG 126043 36 100.0 33 .................................... GGATGAACTCTTTACTTAAATTACTCCAATACG 125974 36 100.0 34 .................................... AGGTAGTAACGTGCCCCTGGATACCGCAGCATGA 125904 36 100.0 36 .................................... CCTGGGGGTCGGGTCGTCTGTTACTGCTGCCAATTC 125832 36 100.0 34 .................................... GCAATTGCAGTCACGATACTGGCAACCATTGCAC 125762 36 100.0 33 .................................... TGCCCAGTTCTTAAGCCAACGTTCTGCAGATTG 125693 36 100.0 32 .................................... GATTATCCCTTCACGAATCGGGTAGACGAACG 125625 36 100.0 33 .................................... AAAGCGGATTGAGTCCACTTTGCCAAAATGAAT 125556 36 100.0 35 .................................... GGTTACAGTCATCGTTTCATCTCCTGGTTGGTTGA 125485 36 100.0 33 .................................... TACTCCGCATGGTATTCCCGCCCTCTTCTCCAT 125416 36 100.0 33 .................................... CGGATGATTCCGATTGATCGCATCTACCAACCC 125347 36 100.0 33 .................................... AGTATCTCCCTTAAACGCGAGACTTTGCTTCGA 125278 36 100.0 34 .................................... CATCTCAGCACCATCAATATGTCGCAGAGAATGG 125208 36 100.0 33 .................................... AAAACTCTTCCATGAGCATGACCAGAAATAGTT 125139 36 100.0 34 .................................... TTTACGATGACTTTCATTGTATTCTCCTCGATAA 125069 36 100.0 34 .................................... CGTCCATCGCGTCCTGGTAGGTCTTGTAGACCAA 124999 36 100.0 34 .................................... TACTTCCAAAAATTGTGGGGCGGTCCGTACATGA 124929 36 100.0 33 .................................... CTTAAAATAAGAATATGCTCTAAGACAGTGCCC 124860 36 100.0 34 .................................... CTCCTACGGGATATCCGTAGATGGGTTCACGGTA 124790 36 100.0 34 .................................... GCTCCTCGCCTTTCAACACTTCAGTTCCTGCAAT 124720 36 100.0 33 .................................... CACTTTAACTTTCGCGGCTCTTTCTCTTAACTC 124651 36 100.0 34 .................................... TAAAATCATTCAGCTCTTAACATAGAGAGTATAG 124581 36 100.0 34 .................................... TGTAAAATAATTTTGTACCGTTTTCTTTCCATCC 124511 36 100.0 34 .................................... ACTACCATGCCGGTGTGTCTCCAGTGGTTGATGG 124441 36 100.0 34 .................................... TCATCTTCGGTGTGCGAACGAGGCATGCAAACGC 124371 36 100.0 34 .................................... TTTGATTAGGCGTAATATTCCTTTTTTAGGTTAA 124301 36 100.0 34 .................................... TCTACAAACCTGATCGAGTCAGATTTACCGAAAA 124231 36 100.0 34 .................................... GTTTCAACTTTTGGGCGTTTATCACTGACTTTCG 124161 36 100.0 34 .................................... AAAAGTTGAAACTAATGTACCAACACATTTTGAT 124091 36 100.0 29 .................................... GGCTCACCCTCGCCCGAGGGAAAAAAAAA 124026 36 100.0 33 .................................... GACACTCCTCCACGCAATCTCGCTCGTCAACTA 123957 36 100.0 33 .................................... GACGTGACCGCCAAGGCTATCCCAGTGACAAGC 123888 36 100.0 33 .................................... GACGTGACCGCCAAGGCTATCCCAGTGACAAGC 123819 36 100.0 33 .................................... CGTAATGTAAATGTCTGTTCTTTCTGCTTCCGT 123750 36 100.0 34 .................................... CAGAACGGCCCGCGCTTTTGGCGCGGATCATTGC 123680 36 100.0 34 .................................... AATCGCACCATTACCGGCAACGACTCCGAAAAGG 123610 36 100.0 34 .................................... TTTTCCCTCGGGCGAGGGAGAAGCCAGTGGACTC 123540 36 100.0 33 .................................... TAACCCCACTAGAAACCACACAGGGGATCAACG 123471 36 100.0 33 .................................... TGATCATCCAAAACCCTTTCAGCACCCAGTTGG 123402 36 100.0 34 .................................... AACATTGAGCCAATTCTTATTTGAATTGGCATAA 123332 36 100.0 34 .................................... ATTCGTATTTTTAGCATTTTTTTCTCTTTTATTA 123262 36 100.0 33 .................................... GATGTCCAGGTCCCACAGGTACCCGGTTTCCAC 123193 36 100.0 34 .................................... CGGAGGGTGATTCCATCCCGGTGCATGATTATCT 123123 36 100.0 34 .................................... GTCCGCGGTACTCCCACACCGCGAATGCGGCATC 123053 36 100.0 34 .................................... CGCCGCCCCAGACGTCAGCCGACCACAGCACCTC 122983 36 100.0 32 .................................... CGGGATTTCTTGCCATTGCAAGAGTACAGAGG 122915 36 100.0 35 .................................... GAAATTGTCATTTCGTAGAACTCTCAAGTGGTTGA 122844 36 100.0 35 .................................... TCATCGATCGCGTCCTGGCGGGTCCGATAGACCAG 122773 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 50 36 100.0 34 GTCTGGCGAATAGAGCCGATTTAGAGGCGATGAAAC # Left flank : AAGTATCCACGGGCCCAAAAGTGCTGCCCCGCAAAGTTGCGCTGGCGCTCGCCGTAGACGCGCGCCAGATGGATCGCGCTTTTGCCCTTGATGAAGCCGATCACCTGGCTCACGGCATACTTCGGCGGAATCGAAATGAGCATGTGAACATGATCCGACATCAGATGCCCCTCTTCGATCCGGCTTTCCTTTTGCCGGGCCAACCGGTGAAAGACTTCCCCGAGGTGCGCCCGCAGTTGGCCGTAGAGCACGCGGCGGCGATACTTCGGGATGAAAACAACATGATATTTGCACTCCCATTTGGAGTGACTTAGGCTCTCGAAATCGTCCATCGGGACTCTCCACAAGCGTGTGCTTGGCGGCTCACGCTGCGGAGTGTCCCCGATGGACTCCCGGAAATGTCAAACTGCTACGGTCACCCCGGCAGAGCCGGGGGATTACCCGTTTTATTTAGAGGCGATGAAACGAAGTTCGTTATGCAGACGAGTCACTAAGTCTGC # Right flank : GATGGTTACCCAAAGACTTTTACGCACCTATGCGGTCTGACGAATCTTAGCGCTACTAGTTATGGTTACACTCTTGGATCGTCGCTACATTCCGAACGACGCTTGAGACAACCTATCCCCAGGCATAAAAGTGCTGCAATCAGATGCCACTTTTCGACCCGGCTTTCCTTTTTTTCCGTTTCAGCCATTGAAAGTCTTCCCTGAGCTGCAACCAAAGTTGCTCGTAGAGCGCGTTGAGGCGATCTTTCGGGATGAACACATAATGGATATTAGCACTCCCATTTGGAGTGGCTTAGGCTCTCAAAATTGTCCATCTGTACTCTTCAAAAGCGTGAGCTTAGCGGCTCACGGGTTGTGAGTATCTCCGATCTGCTCTCGGGAAGACCCTACTGCTACTGTTACTTCAGTAGAGTCAGGAGATTATGACTGTTCATAAACACACCTCTCGCTCCCTGCTACTCACCCTGAACTTTTCTGTTTAAAAATACTTCAATCGTTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGGCGAATAGAGCCGATTTAGAGGCGATGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 2 132337-126942 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRSD01000012.1 Thiocapsa imhoffii strain DSM 21303 scaffold0012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 132336 36 100.0 34 .................................... GGTCATAGGATCGCCGTGCGAACACGGCGATGAT 132266 36 100.0 35 .................................... GTGCGAGGTGCGGTCATGTCTTTCTCCTTGTGGTT 132195 36 100.0 34 .................................... TTTCGCGCTCTGTGAGCAACGAGCTCTTCGGTTT 132125 36 100.0 32 .................................... TCCGGCGGAGGTTTTCCTTGTTAATATTGCTC 132057 36 100.0 34 .................................... GACCATCTTCCGTGATGAATGCTCCGTCGGATTC 131987 36 100.0 34 .................................... TCACCAGCCCCGTTGCGGGAGCAATAGTGATGGA 131917 36 100.0 33 .................................... CGGGTTAATGAGAAAATCAGAAGGGACAATCGT 131848 36 100.0 33 .................................... GCCCTGCAGGCGCTTCTAGTAGCGCCCCCATCT 131779 36 100.0 33 .................................... TTTACCGAAAAAGATGGACGTCATCGGCTTAAA 131710 36 100.0 34 .................................... CTCAAAACTGCGTTCATACTCCCTCCAGAGGGAA 131640 36 100.0 34 .................................... GGCAATATCGCGCGCAGGAACTCCGGTAGGTAAA 131570 36 100.0 33 .................................... GAAAGGGGTCGATCCCAACAGCGGCGCACAACT 131501 36 100.0 33 .................................... GCTGGCCCAAGCGCTGGTGCGCGCCGGCTTAGT 131432 36 100.0 33 .................................... GGGACATTTGCCCCGGTACTTCAGCCTATCGGA 131363 36 100.0 33 .................................... AATTCCTTCTGGCATATTTTCGGTAAACCGGAT 131294 36 100.0 33 .................................... GTTTTGTCGCCCACCAGATGATTAGTGCCCATC 131225 36 100.0 34 .................................... CTCAGAGACTATATTCATAGTCTTCTCCTGGATG 131155 36 100.0 33 .................................... TTATAACCGTGTTTTTCCATCCGGCGGCAAAAC 131086 36 100.0 33 .................................... CTTTGAGGCATAACCGACAGTCATCGTATAGGC 131017 36 100.0 34 .................................... AAAGAAAGGTAATCAACTGAAGAAAGGGTTTAAG 130947 36 100.0 35 .................................... CAGTGCTCACCCGCACTGGCATTCGCGTCCATCTC 130876 36 100.0 34 .................................... TCTTCGTCGATCTTGAGATCGACGTAAGGAAAGT 130806 36 100.0 35 .................................... CTTGCGCGCACTCAGTAAGCCAACGGCTTCTGAGA 130735 36 100.0 34 .................................... ACACCAGGACTGGACAGCCCTTTCCTCGTAAGAG 130665 36 100.0 35 .................................... CTGCCCACCTTAGTAAACAACGCGTACTCGGGCTG 130594 36 100.0 34 .................................... TCAACTCTTTTAAAACTAACGGGTGGCCGTCTAA 130524 36 100.0 33 .................................... GGGTTAGCTGTTGGCGGCTGCCAGCAGCTTTGC 130455 36 100.0 32 .................................... GGTGTTGGGTGCGATATACGTCAGGCGCGCTA 130387 36 100.0 33 .................................... ATGATCATGATCGTTGGGACAATTGAGATGGCG 130318 36 100.0 35 .................................... GGTGGCAAACAGTCTCTGCCATTGACTTGTCTTTT 130247 36 100.0 34 .................................... ATAGACCACGCCAACGAGTACTTCTACCGGAATG 130177 36 100.0 33 .................................... GCGACGATTTCAAACACATCCCACGCGGCAATG 130108 36 100.0 34 .................................... AGCAGCAGCTTGTCAGTCAAAATCGAAAACGGCG 130038 36 100.0 33 .................................... AGTCCTTTTGGCATTACTTCGACAAAGCGGATA 129969 36 100.0 31 .................................... CAAGAAGGGGAATACCAATCCCCTATAAAAA 129902 36 100.0 33 .................................... AGTATCCGTTTTACTGAAGAAGATCGACGTCAT 129833 36 100.0 33 .................................... CATGAAATGTAGTACGGTTTTCAATGCCGCCCA 129764 36 100.0 35 .................................... TTACCACCCCTTACCGAAAATAATCTTGGGGTGGG 129693 36 100.0 34 .................................... GACAGGGGAATCCCCTGCCGGTCTTGAAATACGA 129623 36 100.0 34 .................................... CGTCGGCGGGAGGTTAAAGCGCTTTTGCGAATCG 129553 36 100.0 34 .................................... TAGTCTGGTCCCCACCCCCTAACAGAAATTCCGT 129483 36 100.0 32 .................................... AGCAGATCTGTGCAAAATCGATGATCACTTCG 129415 36 100.0 33 .................................... AATAGATCTTGTCCATCGCTTTAAAATATGGGG 129346 36 100.0 34 .................................... CGATGTAAATGGTCTTGTACTTATGTTTTTCCAT 129276 36 100.0 34 .................................... TATCGATCACCAGCCACAAGGTTTTCTGCACCCA 129206 36 100.0 33 .................................... GATCCACAACCACCATCCCCATAGGGGGATGGT 129137 36 100.0 33 .................................... CATTGGACGTTGCCGCCACAACGACGGGTGCCA 129068 36 100.0 34 .................................... GGTTCGAAATTGCCGCGTTCATAATCCCCTCCCA 128998 36 100.0 34 .................................... TCCATCATGCTTGTCAAATGACATGATGTTCAAG 128928 36 100.0 34 .................................... TGCCCGATACTTACTTTTTTCCCTCGGGCGGGGG 128858 36 100.0 33 .................................... CTTACTTTTTTTTCCCTCGGGCGAGGGTGGGGC 128789 36 100.0 31 .................................... TGCTCATTAGCACTGTCTACAATGTGAACAA 128722 36 100.0 35 .................................... GCGGCGGCACATGCCGCCTTAGCCTCGCGAGCCGC 128651 36 100.0 33 .................................... ACGCATGCGGTGTTGCGCCCGGGGCTAGTGCCA 128582 36 100.0 34 .................................... TATTAAGTCCGCCCATCGACCGAATATTTGTAAC 128512 36 100.0 35 .................................... CCTTCTTCACTTTTTCGAACTCTCTCTGGAAATGA 128441 36 100.0 34 .................................... CAGGCGCGCCGACTAAGGATTCTTTTAGGATAAT 128371 36 100.0 34 .................................... ACGGTTCATAGCGGCAGAAATTTGTCGCCTATGG 128301 36 100.0 33 .................................... ACTTTCGGCGACGCAGACTTTTTTACAACGACT 128232 36 100.0 33 .................................... TGTACCGAAGGCTCCCAACCATCTCACATACTT 128163 36 100.0 33 .................................... GCGCTGATAGCAGATCTGTGCAAAATCGATGAT 128094 36 100.0 34 .................................... CAGTCCAATTGGATGAGAATGGAAAAAGAGTAAC 128024 36 100.0 33 .................................... ACTCAAACATGATCTGCTCCCCGTTTACTGCGC 127955 36 100.0 34 .................................... TGAAGGCTGCAGCAAAATATCGGCATTCGCATCC 127885 36 100.0 34 .................................... CATATTTCGAAGTCTTATAACTTCACCGCCTAAT 127815 36 100.0 33 .................................... TGTCCCGATCATGGGACTCCCCTCCTTTTTGTT 127746 36 100.0 34 .................................... GCGCTTGGAATTACCATAGCCATAATATCCTCCT 127676 36 100.0 35 .................................... CAGTTCTTTGATGTTGGAATTACCATAGCCATAAT 127605 36 100.0 33 .................................... TGCCGCGAAAAATTCGCTCCTAGCTCTCGAACA 127536 36 100.0 35 .................................... TTTTTGCCGAAAAATATGGACGTCATTTGTTTAAA 127465 36 100.0 33 .................................... CTCTTGACGTTACACTTTCTGAGTAATCCTCAA 127396 36 100.0 34 .................................... ATTGAGATGGCGATTATTGCTGTGATTGTGCCCC 127326 36 100.0 33 .................................... CCTTCAATCCTTTGCAAAAGTGTTTTGTTCCAG 127257 36 100.0 35 .................................... TTCCCGGGTTGGTATCTCTGGATGGCCCCGGAACC 127186 36 100.0 34 .................................... ACCGCTCGTAATACCTCCTCAGCTTTCTCGCCTT 127116 36 100.0 33 .................................... GTTTCGGCTTAGTTCGTTATGCAGACGAGTCAC 127047 36 100.0 34 .................................... GTTGATTATTAGTTTGGATTGGGTGGTATTACCA 126977 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 78 36 100.0 34 GTCTGGCGAATAGAGCCGATTTAGAGGCGATGAAAC # Left flank : AATGTCCGGACTGAAGTTCACGGATAATGCTTTCGAAATGCCAGTCTAGTTCAGTTTCTACTTCTTGGATTGACAGTTTCGGAGTCCACTGACCTTTGTTTTTACGGATCGACTGCCAAGCCAGATTCAAGACATCAAAAGTACAAACCTTATCAAAAAGATAAGCCATGATATCGGCTACCCGGTTTTCGCTGGTATAAACAGTCAACGCAGCAAGTTGGCAGGTTTTGAAATCTTAGCCGGAATCGAGTAAATAGATAGGGATAACCCTGTAGTTGAGCATCTAGCTATGGTATGAATCAGTCGATGTCAGAATCTAGCCTGATGAAAAAATCAGGCTTAAGATAAAATGTTGCTTGGCATGCATTTACTTGACAAAACATAGTCTTGTGACATAATCGATATGTCGTCAGATGCGATAGACTCCTATGTCTGCCAGAAACAATCACCCAACCCGTGTCCGCTCAGAAGCCTGCACAGGGCAAATTATCCACAGATGG # Right flank : AAAAAGTTGTTCGTACCGCACGCCAATTTCTCGTCTGGCGAATAGAGCCGAGTAACAATCCCCCGGCAAAGCCGGGGGCTTTGAATTCGTGAGCCGCTCAAAGCGGCAAGGGGTCGCTCACGCGGCCCCACGGTTCTTGGGCCGCCTAAAGGCGGCAGATCAGCGCCACAGTCTGAGCTGATCCAGGTGCTGGTCTTCGCGCTCCTGGTGCTGGATGTATTCTCGGATCGTCGCTTCATCCCGACCGACAGTCGAGACAAAGTATCCACGGGCCCAAAAGTGCTGCCCCGCAAAGTTGCGCTGGCGCTCGCCGTAGACGCGCGCCAGATGGATCGCGCTTTTGCCCTTGATGAAGCCGATCACCTGGCTCACGGCATACTTCGGCGGAATCGAAATGAGCATGTGAACATGATCCGACATCAGATGCCCCTCTTCGATCCGGCTTTCCTTTTGCCGGGCCAACCGGTGAAAGACTTCCCCGAGGTGCGCCCGCAGTTGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGGCGAATAGAGCCGATTTAGAGGCGATGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 18516-17707 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRSD01000031.1 Thiocapsa imhoffii strain DSM 21303 scaffold0031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 18515 28 100.0 32 ............................ TGGGCCAGACTGCGCGACTCGCTGCCTTGCGC 18455 28 100.0 32 ............................ GTGGGAGATCGCGCCGGAGTGGGCGTCGTTCG 18395 28 100.0 32 ............................ AGGAGGCGAGCGCGGCAGCATTGGCTTCGTAG 18335 28 100.0 33 ............................ TTCAGTGGCAGACGGAGAGGTTGAGCGCTGGTC 18274 28 100.0 32 ............................ TCCTGGGATACGGCGTTCAGCGAGCGGGATTT 18214 28 100.0 32 ............................ ATTGCGCTAAAGAACGGGCGGTAATACGGATT 18154 28 100.0 32 ............................ GGAATGCGCGCCGGAATGATGAGCCTCGGCTA 18094 28 100.0 32 ............................ GACGACAACGGTCACGGCCTCGAGGCCTACAG 18034 28 100.0 32 ............................ TCAGTGGACATCTTGAGCCCGCGGATCTCATC 17974 28 96.4 32 ...........................T AAATGGCATCGAAATCTTGACGTGCCTCTTGA 17914 28 96.4 32 ...........................T GTTTCCGCGGCGCTTGGGTGCCTCCTCGTGTT 17854 28 100.0 32 ............................ GCGCATAGACGCTTTCGATGTCCTGCGATCGC 17794 28 100.0 32 ............................ CGATCCATAAGCCAGTTCGACCCGGTAACTGC 17734 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.5 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : TTGCGGCGACGTTTGATTCGACGCCATGGTTTGAGTCCCGAGACCGCACTTGTTCGTCAGCCCATGCGCGACGGCAAACGCCTGTCGCTGCCCTGGCTTGAGGTCCGCAGTATCAGCACCGGCCAGCGCTTCAGACTGTTTATCGACCAAGAGGTTCGCCCTGGGCCGCCCATTCCCGGCAGTTTCAGTCACTATGGTCTCAGCGCTACGGCTACTTTGCCCTGGTTCTAAATTTCGGGTCGATAGCGATGGCCATCGGCCCGATCAGCTCGTCGCGAGGAGTTCGGTCGATGTGCTCGTGCACCGAAACCTAGTTGCTGAAGAGCACGGCACCAGTCGGAAGGGTCTGGCGTCCCAACAGGGATTGCCGGACCCTTTTTTTTACCAGCGATGCATGGCTCGTAGAATCATAAGCTTACGAGACTCGGAAATATTTTGGTTGGCGTTTGAATTTCGCCGCAAGTTCTTTAAAAATATGGTGTTAGGAAACTATCGCTGTA # Right flank : GGAAGCTATCGAGATCTAGCTGCGTATTCCACCGCCATTTGGCCGGGGCCGTCGGATTCACGTAGGAGCACTAGCACACCCTGGCGCTTGGTTAACTATCGAGCAGGTCTCAAGAGCACCCACCGGATCAGGTCGGCTGGCGGGGCGTGGTGCGACGCGCTGGCAGCAGCTCATCAAGGCCGGGGAGATCGAGGCCAAGACGTTACGGGCTTGTGTTGCGTGCAGAGCACTGTCGGTCATACTTCGCCCATGACCATCCCTATGGGCTGCGAAACCGATCTGCGCGCCAATCTGCGACATCTTGAGCTCTCGAGACATGCCCAATCTGCAGTTTCTGTCGCCGTATCCTGTTCTTTAGGTCAAGCCGAAAACCGTGCGACCCTATTGACGCTGCCTCTTGTGCTATGCCAGAATCCAAAGGTTCGGATCTCTTGCAGAGTTCTGGGATCCCTTATCTTTAACAACCTGAATGCGCAGAATGAGGTCTAGGCGTCCCGCAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 111700-112985 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRSD01000010.1 Thiocapsa imhoffii strain DSM 21303 scaffold0010, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 111700 36 100.0 32 .................................... GCCGGAGCCAGTCCCCGACGCACGACGCCCTG 111768 36 100.0 35 .................................... AATTACTCCAATACGCGGGGGTCTTCCCCCGCTTG 111839 36 100.0 33 .................................... GAAGCTTTTCTGATGCAGTCTCTTTCTACCGGA 111908 36 100.0 33 .................................... AGTCCGAACGAACATTCCATACCTGCAAGGCTC 111977 36 100.0 34 .................................... TTAACTTCACCTGCTTGAAATGAAGTTAAATAAG 112047 36 100.0 33 .................................... ACGCGCGTGCGTTCCATTGCAACGCTGTGAGTG 112116 36 100.0 34 .................................... CACACTCGGGTGCGCAAACCAGCCCGAGCGTTCC 112186 36 100.0 34 .................................... GGTGGGCCTGGCGCTGAGTAGAGAGTGTCAGCTC 112256 36 100.0 34 .................................... ATCGGTCCACCGTCCTACACGCCCACCACCCGCT 112326 36 100.0 32 .................................... CCACCAGGGTATGCCGATTCATCCTCGATTCG 112394 36 100.0 34 .................................... CCTCACCTTACCGCCCAACTGATATTCCTCGACA 112464 36 100.0 34 .................................... TAGATCACATCCGCGCTTTCTGCTCCAGCTTTTG 112534 36 100.0 33 .................................... CCCCATTTCCGACGCCCCAGACGGACGAGCCGT 112603 36 100.0 34 .................................... CCTCACCTTACCGCCCAATTCATACTCCTCCACC 112673 36 100.0 33 .................................... CTCTATCCCGAAGCCTGCCATTATTAACTTCGC 112742 36 100.0 33 .................................... GGCGGCATTGCTCAGCGCCTTTGCTGATTGTGA 112811 36 100.0 33 .................................... CATCTGTACGCCCTTCACGAGGTGCAGGTGAAC 112880 36 100.0 34 .................................... TAGATCACATCCGCGCTTTCTGCTCCAGCTTTTG 112950 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 19 36 100.0 34 GTCCGGACACCTACCTGATGAAGAAGGTATTGAGAC # Left flank : GGCCTTACCGTCGCTGATGCCATGGCGATTGAGGAAGGCTTTCAGCCTCGATCATGGTCGGGTCCAGTAGCGGGATGCGGAATCAGTATCACCCCATCGATCAATCCCTTTAGGGCGCTGGGCGACCACGCCCGCTACGATCCTGTCATGTGCGAGCGTGCGAGGACGATCTGTCTTGGGCCGCTGATCCGTGTCAATGCGGTCAGCCCCGGCTGGATCGAGACGGGTTCCTTTCAGAAGGCGTCTCGTCGGCGTTGCCTGGTTCACCGGCCAGCATCTGAGGGGTGATGCCAGCATGACGTGGACGATGATCGATGCGCAGTGAGTGTCGAGCTGATGTCTGGGCTGGAATATGGTACACTGGATGTGCCATTTCCGCAGACAGCTCGCCAGCAACCTAGAAAGAATCGTGCCAAGTGCTAACTCGAAGGACCCCATTTGATACCCCCAGCGGACCCTTGCAAGCGCTTGAGTCCTATGCGATTCTGGGAAGTGCCGGG # Right flank : CCCCCATTTCCGACGCCCCAGACGGACGAGCCGTGTCCGGACACCTACCTGATGAAGACCACAGATAGGTTCGGTAAAGAGACCCAACCTGAGGGGATTGAGACGGCGCCCATCAGGTGCCGTTTTGCGTGACAGCACGGCCTTCTCGATTGAATCTTGTGACCGGTCACACGCTGTTTTCGTGATTGTCTAGCCGAGATGCCGGAATCGGCGAGGTGTTCACATCACGTGCAGATCCGCTCCTCACCCATGTATGCCCCACTGATCCGCCGCACGCTCACCCGCCTGACCGTCTACCCTAAAAGACACCCATATTCGTTGTCCGGGGTGCCTCGTGCCGGTTTCGCTGCTTCGCTCGATCCTCGTTCTTGCTCTCCTGTCCCTGCTGTTCCTCTCACTCGCCAACGCCGATCGCCTCACAGGCAAGGTTGTGCGTGTCCTTGATGGCGATACTGTCGAGATCCTTGATGCCAATCGGCGCACCCAGCGATTTCACAGCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGGACACCTACCTGATGAAGAAGGTATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 130229-131654 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRSD01000010.1 Thiocapsa imhoffii strain DSM 21303 scaffold0010, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 130229 36 100.0 32 .................................... GTCAAAATAGTTACTGGAATGCCTTCTTTTGT 130297 36 100.0 35 .................................... AAGTTTACAACCTGCCTTCCTGGCTTTAAGCGATC 130368 36 100.0 34 .................................... ACTACCCATACAGCGGAGCTGACGAGTCCCATGG 130438 36 100.0 33 .................................... ACGTTGGCGATGTTGCTCATGATGGTCTCCAGC 130507 36 100.0 34 .................................... AAATGCAAGTTGTACATCTCGTATAACGACGACC 130577 36 100.0 32 .................................... GGGTTTTCGATCCGCCAGTACATTTCCAGCGC 130645 36 100.0 33 .................................... TGTGCGCGGCATGGGGTGAAGATTGAGTTTGGA 130714 36 100.0 34 .................................... AGCTTCCGGGTGGTATAGCATCTGCTCCTTTTCC 130784 36 100.0 34 .................................... GGATAACGATGCGCGACCGCAGAAATGGCATCGT 130854 36 100.0 33 .................................... CGTCTGTGGCAACGAGGTCCACGTAGCCGAAGA 130923 36 100.0 31 .................................... AGACCTGCGACACCGCGATGAACTCGTCACC 130990 36 100.0 34 .................................... GGACCACCCGAGGCGGGTGGGGACGTAGACCGCC 131060 36 100.0 32 .................................... CGCCATCTTTCCGATGCCATCCACCTCCCAGT 131128 36 100.0 31 .................................... CGACTTTTACGGACGCCTTAGCTCGCTCCGA 131195 36 100.0 40 .................................... GCTCCACGTTGGCCAGCCTCCATCGTCCGCCGAGCGTAGG 131271 36 100.0 32 .................................... AGAGCCGCTCGGTGAGGGCCAGTCGGAGGTAG 131339 36 100.0 34 .................................... GCGGTCCCCTTGGCGTCTAGGCCCGCGGTCCCTA 131409 36 100.0 34 .................................... GGGGATATGTTGTGTGACACAACATACACCCATC 131479 36 100.0 34 .................................... GACGGACCGGCGAACCCCGTATCGAATCCGGGGT 131549 36 100.0 34 .................................... AGATTGCGGTACTGCTTGTCCGCACTGTATCGGA 131619 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 21 36 100.0 34 GTCCGGACACCTACCTGATGAAGAAGGTATTGAGAC # Left flank : CGCCGACTCCTCCGGGTGCTCGAGCGCTTCGTTGCCGATCGTGCCGCGATGTCCCTGATCGCCCGCTGGCTCGACCAGGGTGCCCACGTGCGCAGTTTGCTTAGCACCCCACGCGGCATCGCCCAAGGCGCGATTCTCTCGCCCCTCTTTTGCAATCTCTATCTGAACGATTATGATCAGGCGCTCGCGAAAGCGAACATTCCGTTTGTCCGTTTTGCTGATGATTTCCTGTGTTTTGCTCCCGACCGTGAGACCGCGCAGCGCGCCCATGCGTTCGTAGAACGTGCCCTCCAGCGCTTGGATCTGCGCCTACACCCCACCAAAACCCAGGTGGTCCGGAGCAGTCGCGAGGTTATTTTTCTGGGCGAGTCATTGCCACAACCCGCCCGTGTTCAACCCGGAAAGAATCGTGCCAAGTGCTAACTCGAAGGACCCCATTTGATACCCCCAGCGGACCCTTGCAAGCGCTTGAGTCCTATGCGATTCTGGGAAGTGCCGGG # Right flank : CCAAAACGACCCAGAGGGGACGAAGACGGCGCTATTCGGCGCCGTTTTGCGTTGATACCGAAGTGGACGGGTGAATCCTGGTCGCGATGGCGTTGTGGCGGGGTAGTCAGACCGCAGACGAGCGCGTTGCACTGTGATCAGACGCGTGCCTCAGCCTGAGTGCAATGCCTCTGCGGTGATCGCTGCAATCAACTCTTGTCCTTCGTGGCGCACATTACCGACCGCTCGGCTGACGGGCACCAGCTCGAGCGGTTCATCTGGCGCCACGGCGCACAACGCCTGGATCACGTCCGCATGACAGGCGCTCGCTCCCGGTGTCGTGCTCGTGGATTCTCCCCTCGAATGACCTCGATCATTGGCCGCTGGCGTCTGTGGGTTGATCCTGTGCGATGACTCCCAGGCAGTTGCGCGTGCTGCGTGCCGGCGCAAGCTTGCAACGACGGCAATCGGAGACCAGGGCGCGGATGATGGCGTTCCGGGCCGACGGCTCGTTGCCGGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGGACACCTACCTGATGAAGAAGGTATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 3 134016-135300 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRSD01000010.1 Thiocapsa imhoffii strain DSM 21303 scaffold0010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 134016 36 100.0 34 .................................... TTGAAATCAATAAATGAATTGCGAACCATCCCGA 134086 36 100.0 33 .................................... ATCGACGTCATCGGCTTAAAGAATGGGGTACTC 134155 36 100.0 33 .................................... AGTACTTCTACTGGAATGTTCTGCTTGTCTCTA 134224 36 100.0 35 .................................... GTCTCCCCCCTTTTTATCGATTACCATCCAGTATG 134295 36 100.0 33 .................................... AAGCGGATACTATCCGCTTTGCCGAAGTAGATT 134364 36 100.0 32 .................................... CTTCTACTACGTCCTCTTCATCTACCGCTACG 134432 36 100.0 33 .................................... AAGGACCGACAGGGGGATTCCCTGCCGGTCTTG 134501 36 100.0 32 .................................... CGAAACTGAACGCCGATTCCGCCTGAATCTGG 134569 36 100.0 33 .................................... AACTTTCCGCCTTTACGGCGGAGGTTTTCCTTC 134638 36 100.0 34 .................................... AAGCACCAATCTGGAGCTTGACGGCCTCGATCCC 134708 36 100.0 34 .................................... ATCCTGTGGCATTTATCATTATAAAACATGTACT 134778 36 100.0 34 .................................... ATAATCAAAAACTGCATGTTCAATCTCCTCAAAT 134848 36 100.0 34 .................................... TTCAATGTTTCGGTTCCTGCAATCTGTGCATCAG 134918 36 100.0 34 .................................... TCACCGGCACTGTCGATTACATGCAAAAGTCCTT 134988 36 100.0 34 .................................... TCTGGACTGTCGCCGAAATCATCCCGGTATTTTT 135058 36 100.0 33 .................................... GCTCCCCTATTGCCCTGGGGGTCGGGTCGTCTG 135127 36 100.0 34 .................................... ACTCCGGAAGCAGCTCAAATGCCGCATCGCACAA 135197 36 100.0 32 .................................... TAAACGGGGGTCTTCCCCCGCTTATCAATAAT 135265 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 19 36 100.0 33 GTTCGGTAAAGAGACCCGACTTGAGGGGATTGAGAC # Left flank : ACTCGCGTGCTCTATCGCGGGTACGGAGATCAGCTGGTCGAGATCGTGGTCGAGAAGGTCCGGACGGGCCTCCCCAAGAGCGTGCTTCGGAGGTACAAGCCGAACCTTCCGCTGATTCGCGGGCAGCTTTACGAATCCATGCAGGAGAACGGGTGGTCGCGGAAGGAAGTGGAGATGATGGGGTTCACGCCAAAAGTCGGGACGGTGCGCTGATGCGGCCAGGAAAACTCATCGTCCTCGAGGGGATTGATGGCAGCGGCAAGAGCACGCAGGTGGAAAAGATCGTGGAGTCTCCCTTTGGGGCGCTGGGCGACCGCGCCCGCCATGCCTCGCGGACCCTGGGTTGCGCCGCCTCGTCGTTGCGGGGCGGACCTTGTCATGCGGTTCCTGAGTGACTATGATCGAACTGTGAATCGATTCTGTGGACATCGTGATGGATGGGTGGCGATCGTCGTCGATCAGACACGAAACCACCTCCATGACAAGTTATCCACAGATGG # Right flank : CGGCGCCTAACAGGTGCCGTTTTGCGTGACAGCACGGCCTTCTTGATTAAATCGACCCGTCGTTCACAATTTGTTTTCGTGATTGTCTAACGGACATGCCGGAATCGGCGATGTGTTCACATCACGTGCAGATCCGCTCCTCACGCACGCATGCCCCACTGATCCGCTGCACGCTCATCCGCCTGACCGTCTACCCTAAAAGGCACCCATATTCGTTGTCCGGGGTGCCTCGTGCCGGTTTCGCTGCTTCGCTCTGTCCTTGTTCTGCTCCTGCTGTTCCTCTCACTCGCCAACGCCGATCGCCTCACAGGCAAGGTCGTGCGTGTCCTCGATGGCGATACCGTCGAGATCCTTGATGCCAATCGGCGCACCCAGCGATTCCACGGCGGTCTCTTGCAAGCTTGTGAAGCCAGGCAAGCGAGGGCCTTGACCTCATGATGATGCCTCGCGGTGGGGGCCGGAGGGCCAGGGAGACAGGGATGTCACACCGCGCTCCTCGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGGTAAAGAGACCCGACTTGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA //