Array 1 234566-234997 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARML010000005.1 Paraflavitalea devenefica strain X16 scaffold29_len707580_cov190_read100_maxK100_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 234566 36 100.0 30 .................................... GGAACAGTATGATATAATCTATAATATTTT 234632 36 100.0 30 .................................... TGAGAAGACTTCCTTTTGTATATCCGTTAA 234698 36 100.0 30 .................................... ATGTATGATTACGCTATTTAAATGCCTCTT 234764 36 100.0 30 .................................... ATCAATGGTTTTACATACGACTATCAATTT 234830 36 100.0 30 .................................... CATACCTTCGGTACGTTCCATCACCAAACG 234896 36 97.2 30 .................C.................. TTCCATTGGAGAATTTAATATAGGCGGAAG 234962 36 97.2 0 ........................A........... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 99.2 30 GTTGTAACTGCTCTTTGTTTGAAGGGTAAAAACAAC # Left flank : AAATGGTATAAGTGGCTTGTGTACCCGAGTGTTAATTGCATCGTTGCAAAGGACAAGGAAACTATAAAAATAAATTACAGGAAATTAAAGGAGAACGAAGAACATAAAAATGATACGGCAGAAGAAATATTTGACAAGGCATATTGGTATCTTGAATACCACGGCAAAATTGATACGGCCAAAATGTTCCAATCTATGTATTTCTTTTTAAGAAATATGGTAACACTTTGTTTGCTGATGATACCTGTCCTAAGTTTAAGTCTTATTTTCTTTTACTCTTTTAATACTATTCTATTTATTGTCATACTCTTTTTGTCACTTTTTGCCATAAGCACAATAGCAAATTTTTACAGGCGCAAAATGGTAGGCAGAATATTTGGCAATTATGTTATTGCATTGAAAACCTAACTCTGTACTCTATATGTTTCACATAAGAGGTGCATTTTTATATCGTAAAATGCGATATAACCAATTTATTTAAAAGCAGTTCTGCAAATGCT # Right flank : CTGTTCGGAGATAGGCGTAAGAAAGACTGTCTGAACCCATTATCCTACAGGCAGGTGCCCATTTCGGGCGGCATCCCGCTGTTGCGGGACAAGCTCTAAAGGCGCCGTAGCCTATGCACAAAACCAGGGCTACAAAGCGACAGCCCCGCTGGGGCTGGATTGGCCTATCCAACCAATGCTCCCCCGGTATGGGAACTGCCGCCGAATTTGCAGCAATGACTGAAGGAGGAAGAACAGTCAGGAGTCTGGAGCCGGGAGTCTTGAGTTCAGAGTCAGGAGCAGGATGCGCTACAACTAATGCGGGGTATGAAAAGCCTGTGCAGGTATGGGTAATCAATGAGAGCGGTCAACTGGTTTTTAGCGGACCAGCCCCTGGTATGTATTTTTCTTCTGATATACCTATAGTCAATTGTCTTTCTTCAACTCCATTTGCAGGATTGGGAAGTCTTTCCCTTCTGCGTCCTTCTCTAAGCGGTTAACCACCCGGAATCCTTTTTGCA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTGCTCTTTGTTTGAAGGGTAAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 855182-854364 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARML010000004.1 Paraflavitalea devenefica strain X16 scaffold33_len855357_cov193_read100_maxK100_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 855181 47 100.0 30 ............................................... CATAAAATCAGCCTGGGCAGGGTGTGGACG 855104 47 100.0 30 ............................................... TATATTCTATTTCTTTCCGCAATTATCCCT 855027 47 100.0 30 ............................................... CCTAATAAGTGAGCAGATGTCGCTTGACCA 854950 47 100.0 30 ............................................... TCAAGGGTCAGAGCTTGTCCACCTCCTGAT 854873 47 100.0 30 ............................................... GTGACGGCCTGGGGAGCCAAAGGCAGATCA 854796 47 100.0 31 ............................................... CCGATCACTGTTGGCACCAGCGTGCCTTGTG 854718 47 100.0 30 ............................................... TTCTTTTGCAGGAGTTATAATACTCTTCGT 854641 47 100.0 30 ............................................... TGACATACCGATTTATGTAGGGCGTGCCGT 854564 47 100.0 30 ............................................... GCCATTCATCGTAAAACAGGAGATAGTCAG 854487 47 100.0 30 ............................................... CTGCTCGGATATTACCGTAGGAAGCGCATA 854410 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 11 47 100.0 30 GTTGTGATTTGCTTTCAAATTATCAGTAGCTTAGGGCTACACACAAC # Left flank : GAAAAAAATCAAAAGCCAATCAATAACCCTTTGTATTTTTAACACGCATCAAGCTCTTTCTTTTATTGCCTACCATCAGGGGTGGGTCAACATCGAGGAATGATGGGTCAACATGCCAAGAATTTACACTTAGGGCTACACACAACCTAATGGTGATCAGTTGTCATCTACCAGG # Right flank : AGGATTGGCTAAAACCCAGTCCTGTTGTGATTTTGAGCCGTTTTATAGGATTGAAAATCCCGTTTGGCCGGGTATTTTTTGAATTCTATTATCCCGCTTTTGGCTGCCGCGGCATTCCGGAGCGGATTCCGGAGATTTTTGTCTATCAGGCTACTAACTTATTGGATGCCTGCATGATGCGCCATCGTTCCTCTTGTTCTTTCCATCGTCCTTTGAGCCTTTGTTCTTCAATCCATTCCAGGTGCGCCTGGCGGGCGAGGCGTTTTCTTTCCTGCTGCAGTCGGTCGGCTGTATGGTCGTAGCTGCTCTTCCAGTGGTTTTTGCCCAGTATTTTCAGGTAGCGCCGGCATTTTGAGTTCTCGGTGAGGTGTTTTAAACGGGTTTTGTAGGTTTTCCCGCGCCTGAATGGTTTGTCCTTCCTGCCGGTTCTTAGCTGAATGCCAGTTTTCTGTTGATAAAGGACCCAGTACTCAACATAAGTCTCCCACAGGTAATCATAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTATCAGTAGCTTAGGGCTACACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.70%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 109664-111096 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARML010000011.1 Paraflavitalea devenefica strain X16 scaffold44_len111457_cov230_read100_maxK100_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 109664 47 87.2 30 .........A.........C....TA.......T......G...... TGGTGTTTACAATCCTACTTTGCAGGAGCT TC,T [109681,109688] 109744 46 80.9 30 A........A.......TT.A...T.........A.....G-..... TCCATAGGTTGTAGTCCCATGTTCCGTACC T [109767] 109821 46 89.4 27 .........A..............T.........A...G..-..... AACAACGTCGTGGCCTATAGTGCAGTT A [109840] 109895 46 89.4 30 .........A.......TT.....T................-..... TTGCCGTTACTCGTCCTGTTACTTGTTCCA T [109918] 109972 47 100.0 30 ............................................... CATTGCGATAACCGCCCTCATTGGCGCGAA 110049 47 100.0 30 ............................................... GGCGCTGAACTTTGCCAGCAGGTCATTGAA 110126 47 100.0 30 ............................................... CAGATAGGTAATTCACCTACCAACCAAATT 110203 47 100.0 30 ............................................... TTCGCCAGTAAGAAGCAGGCCGACGCCGAT 110280 47 100.0 30 ............................................... GGTATTGCATTAACTCATAGCCCCAGGCTA 110357 47 100.0 30 ............................................... TGAAGACAAATCGGGATAATAGAGTCCAGT 110434 47 100.0 30 ............................................... CGCAGCTAAACGTTTAGCCTTTTTGTTCCA 110511 47 100.0 30 ............................................... TTCTGCGCAGCCTGCCGAAAGGTTGCAATA 110588 47 100.0 30 ............................................... TGGGCCGGACCATGTTGGCAGATTAAAAGG 110665 47 100.0 30 ............................................... TGCGGGCACGACTGGCTGAGCTCACTGATC 110742 47 100.0 30 ............................................... TGTGTCTGCCACTAATAGAATACTCGCCTG 110819 47 100.0 30 ............................................... TCCCTGTTACAAAGGTTAACGACAACTACC 110896 47 100.0 30 ............................................... TTTAACGTATCAATTAACTAACACTATGCC 110973 47 100.0 30 ............................................... CTCTTCGTATTGCTTAAGAAGTTTATCCCA 111050 47 83.0 0 ...................................TG..G.TT.TTG | ========== ====== ====== ====== =============================================== ============================== ================== 19 47 96.3 30 GTTGTGATTTGCTTTCAAATTATCAGTAGCTTAGGGCTACACACAAC # Left flank : AAAGTGTGGTTTGATGAAACCCGCATATTCATTGAACTAACGGACAAGACTGTTATTGGTGCTCCTGTTGCCTGGTACCCACACCTTAGAAAGGGTACGCACGAACAACTTAACCAGTATGAGATATGGAGTGAAGGTACCTGGTTGCATTGGGAGGAGCTTGATGAGGATCTTTCTCTGGATGGCTTTTTACAATTGATTTATAAAAAGGCAACAGCTTAAATATGGCTACTATTACAGGAACCAGGGATGCATTTATTGCATTGCTGCAGGAACGTGGTGTATATACCCGGCTGGGTGTGGATCGTAGCACAGTGAGCAACTGGCGTCGAGCCCTGAAAGGGCAGGATAATAAGTTTATGCCATCACTTGATAAGATGGAAGAAATGCTATTAAAATCAGGGGCAAAGGTGGCAAGGGAGAAAGTCTGGATAATTCCAGTAGAAAAATAAAAGGGCTGCATTGCTACGGCCCGGCTTCCTTTAAATCACAGTCATTTA # Right flank : CGCATGTTGACCCAGGGCTCCTGTTTATGTTGACCCACTATTCTTGCATGTTGACCCACCCTTTAGAGCGCGGGTTTAATCACAAATTCCTGCATGTTAACCCACACGTAGAAATGGAAGGCAAAAGGCCTTCCGGTCAGATTCCTGCATGTTGACCCACCTGCTTGTAAAGATTCCGCAAAATAACTTACTGACATTCCTGCATGTTGACCCACCCCTGAGGCAATAAGAGTTCCTGAGCTTTGATGTCTTTTGCTCCTTAAAACAAACAGGAGCATGGCACAAAAACCCATAGCGATGGAACACTTAAAACAGCTTCTTCAACTTCAAAACGACGGGATCGGTATCCGGGAGATGGCCC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTATCAGTAGCTTAGGGCTACACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.70%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [71-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //