Array 1 477134-478198 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQTP010000002.1 Salmonella enterica strain S26 NODE_2_length_726730_cov_114.730858, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 477134 29 100.0 32 ............................. TCTTCGTCGCTGGCGGTTCCCCAGTCCCCCTT 477195 29 100.0 32 ............................. ACAAACCCCTGTTTTGTTATCAACAAACTGTG 477256 29 100.0 32 ............................. TTCAATTCCGTTAATCCAGGCCTGCCGTACTG 477317 29 100.0 32 ............................. GCGGGCGCTCATGTCAAACGCCATCAGCGTTC 477378 29 100.0 32 ............................. AGGATATTCGTGTTCTCATTGATGCGATCTCT 477439 29 100.0 32 ............................. CTGTTTTGCAACCGCATCCCCGGATTCGGGAT 477500 29 100.0 32 ............................. TTGCCACAACCACAATGGATCAGGAGCAATTA 477561 29 100.0 32 ............................. AATTATCGAAAGGAGTTACTCAGGGGGGAGAC 477622 29 100.0 32 ............................. CAGCGGAAGCGATCAGTGGTCTCGATACGGAA 477683 29 96.6 32 ...................A......... GGCTCAGGTTGATGATTCTCATGAGACACAAT 477744 29 100.0 32 ............................. GCTACTTACAGAGAACTACTGGCAAAAGAAAC 477805 29 100.0 32 ............................. AAAGCGGTTGCTATTGAGTCTCCCCTGAGCGA 477866 29 100.0 32 ............................. CGCTGATTACTATACATAGTCAGCGGGCAATA 477927 29 100.0 32 ............................. GGGTGATCATGACGATCCAGAGCATATTGCCC 477988 29 100.0 32 ............................. GATTGAGAGAAGGGCTTGCTTAGCTTCCTTCC 478049 29 96.6 32 ..................A.......... TGGGGCTGTAAGGTCCGTTTAATATCCACTCA 478110 29 100.0 32 ............................. TTCGTTAATTATATTACAATACAAATCATAAC 478171 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 495084-496638 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQTP010000002.1 Salmonella enterica strain S26 NODE_2_length_726730_cov_114.730858, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 495084 29 100.0 32 ............................. CCATTTTTGCCGCCATATGCAGCTCGACGACA 495145 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 495206 29 100.0 32 ............................. GCCGCTCGTTCGCAGCGCCGCATGACGACTCT 495267 29 100.0 32 ............................. TCTCAACAGGCACCACTTATTCTAACAGCGCC 495328 29 100.0 32 ............................. CGCCTTAAATTGCTGCCCGGCCTGGCTAACAG 495389 29 100.0 32 ............................. CATCAGATCCTCGCTATCTGGATATGGCTGCG 495450 29 100.0 32 ............................. TGTTGTTACTTTGTTCAGTCTGGCCCATAGCG 495511 29 100.0 32 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGA 495572 29 100.0 32 ............................. GCCGCGAAATCGCAGCGCCGCCTGACCGCCCT 495633 29 100.0 32 ............................. ACGCCCTCAAACACACGTATCTCGGCTACGAA 495694 29 100.0 32 ............................. TCTACAGACGTATTACAGCAAGGCGAAGCAAC 495755 29 100.0 32 ............................. CCCTGCGTCAGTGCGGCAAACGTCACCTCGTC 495816 29 100.0 32 ............................. GATTTATATCCATTTCCGCGAGCGAACCGGAG 495877 29 100.0 32 ............................. CGATCGGTATTCGACAAGCTCATCCAGCAGCT 495938 29 100.0 32 ............................. TGTGGGTTATCAACCTCTTATCTTGAGCAGAT 495999 29 100.0 32 ............................. TGGGATAAAGGACGTGCCGACACCGTTTTTTA 496060 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGATCCAACC 496121 29 100.0 32 ............................. CCGCAACTAAGTTCTATGTGGATAGTACAGTT 496182 29 100.0 32 ............................. CGAATTTAAGAGTCGCATCTGTATTTAATGGT 496243 29 100.0 32 ............................. AATAGCACGCCTGCCGTTGTTTCCCGCGTCTT 496304 29 100.0 32 ............................. GGAGCACGGTAAACCACTGGCGCAAGGGCCGC 496365 29 100.0 32 ............................. CCAACAGACAACCAATGCGCAGGGGTAAGGCG 496426 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 496487 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 496548 29 96.6 32 ..........T.................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 496609 29 93.1 0 A...........T................ | A [496635] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATTCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGAACTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGTGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //