Array 1 288136-288833 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLNA010000002.1 Bacillus safensis strain N66 N66_ctg00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 288136 32 100.0 33 ................................ ACTGCTCTTTCTAGTGATGCATACGTGATCGGT 288201 32 96.9 35 ........T....................... AAGTTACTCTGACGATAGCATATCGAATCAAGGTG 288268 32 100.0 34 ................................ CATTAATGTGTAGAGATGCACCCCATCTCCTAAA 288334 32 100.0 36 ................................ TACAATGTGGCTGGGCTTTAGATATAAACGGTAACC 288402 32 100.0 35 ................................ AATTACTATTAGTAATTTATCCAATCATAAACACC 288469 32 100.0 35 ................................ ATCAAGATCGATCTCATGACTCTCAGATACTGCTC 288536 32 100.0 35 ................................ AATAAGTATGTGGAGCCAGTCCTTAAAGAGTTTTT 288603 32 96.9 34 .............A.................. TTCACTCACTGTACGCGGTGACTCTTTCGGGAAA 288669 32 100.0 35 ................................ ATTGGTTAGACGGCCAGTTTCAAAGTCGATTCGGT 288736 32 93.8 34 .............A.....G............ GATAATAGCCGGCAAGCTGCTTCGTTTGGTACTC 288802 32 87.5 0 ...........T.......T.A...C...... | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 97.7 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGATCAGTTAGGCGAAACAAGACAAAACATCTCAAACATTCACAAAAAAGCACTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGCACGAAGACAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAATAGACCGGCTGATTTACCAAGAAGGACCTGGATTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGAGGCTCTTGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTATATTTTATAAAGGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TTCTCGTCAATAGGTGGCTTGAAAAATATATTGACAATTGTGCTTGATTTAGGTGTGAAAAACATAACTCTGGCTCAGTAGTCATGTTTTTAAATGAATTCAAACCTGTTGATGAAATAATGAATAAGTACCTTTAGAGCAATAGTTTTTAATTAAATAGGAGTAAGAAAAATTTGGTGCGAATGTGAGGTGAACATAAAATCCCTGAGGCATTCGCACCTTTTTATTCGACAAAACTGGGTAAAAATGTATATTTTGTGAAGGAGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTTCTAAAAAATGTTACAATTAGGGCGGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATAACAAAGACGGTGTTTTGATTACACCAAACGGTGCCGTCGCACTCTACATGAGTGCGTGGATTGAAATAAAGATAAGGGCGATGTACCGTTAGAAATTCCACGTCGCACTCTACATGAGTGCG # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 289178-289806 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLNA010000002.1 Bacillus safensis strain N66 N66_ctg00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 289178 32 100.0 36 ................................ AACAAAGACGGTGTTTTGATTACACCAAACGGTGCC 289246 32 100.0 34 ................................ AAAGATAAGGGCGATGTACCGTTAGAAATTCCAC 289312 32 100.0 35 ................................ TTTAAAACGTGATTCTTTCCAATAACGTTTACTAG 289379 32 100.0 34 ................................ CTCTTGTAATGCGAAAACGAGGAATGACCTTACT 289445 32 100.0 33 ................................ ACATTCAAAATCGCAAGCTGTATCGTTTTCAAA 289510 32 100.0 34 ................................ TATCAAAAGTGGAGAATACAAGTATCGTTATATA 289576 32 96.9 34 ......................A......... TGTCATAGAACGCAATTTCTCATCAATACTTTCG 289642 32 93.8 35 ...................T.........T.. ATGAGCTTTGTAGGGTTAGAAATGTAATCCCACAC 289709 32 96.9 34 ...........T.................... TGTTTTGCTTGAGCGTTCGGAAAGTTGAACACAG 289775 32 84.4 0 ..................T...AAT..T.... | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 97.2 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TACATGAGTGCGTGGATTGAAATATTGGTTAGACGGCCAGTTTCAAAGTCGATTCGGTGTCGCACTCTACAAGAGTGGGTGGATTGAAATGATAATAGCCGGCAAGCTGCTTCGTTTGGTACTCGTCGCACTCTATATGAGTGTGAGGACTGAAATTCTCGTCAATAGGTGGCTTGAAAAATATATTGACAATTGTGCTTGATTTAGGTGTGAAAAACATAACTCTGGCTCAGTAGTCATGTTTTTAAATGAATTCAAACCTGTTGATGAAATAATGAATAAGTACCTTTAGAGCAATAGTTTTTAATTAAATAGGAGTAAGAAAAATTTGGTGCGAATGTGAGGTGAACATAAAATCCCTGAGGCATTCGCACCTTTTTATTCGACAAAACTGGGTAAAAATGTATATTTTGTGAAGGAGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTTCTAAAAAATGTTACAATTAGGGCGGAAATCGCA # Right flank : TGATTATGTCTTAAACGGGTATGTCTCAGAGATCATGATCTTACAACACCCTCTTTCAGATACAAAAGCCATCAAAATAGACTGTTCATATGTATAGTGAAAACATGACTCATTGCAGTCATGTTTTTTTTCTTCTTTTTCCTAAATAAACCTAAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTTATTTAGATTCAAATTTTATCCATTCGTAAAAAATGAAGGAGGAAATGGTTTGGGTGAAACGAAGCAAACCAGTAAAGTGGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAATCATGGCGGACTGACAGGGGATTCTAGAGAAGTGATGTGGCTGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGAAGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGATGAGCAGTAT # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 297913-298677 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLNA010000002.1 Bacillus safensis strain N66 N66_ctg00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 297913 32 100.0 35 ................................ ACCTTGTGTAACATATAGGTAATCCATTGGGAACT 297980 32 100.0 35 ................................ CCCAAAATATACGCCCCTGCTCTGGTGGGTATATG 298047 32 100.0 36 ................................ AATTCAATATCAAACTGTACATCAACAGTTCTCACA 298115 32 100.0 36 ................................ CGGCAATTCCATTTGATCTGCTTTTATGAACAAAGG 298183 32 100.0 34 ................................ GCTTTTTAAGCCATTATTTTCACTCTTTAAAGTG 298249 32 100.0 34 ................................ TCTCAAAAAATTATGCAAAGACTTCGGAGTCGAT 298315 32 100.0 35 ................................ CCACTCTTTCTGCTTTTCTATGAAGTCGTTCGGTT 298382 32 100.0 37 ................................ TCATTCGCTGTAATTGCAGCCGCAGCAGTGTTAGCGT 298451 32 100.0 33 ................................ TCGATTCCTTTTTATCAATCGCAGGCAATTCAC 298516 32 100.0 34 ................................ TCGTTTGGATGGACGAAAAGGACAGGTTCAAATA 298582 32 93.8 33 .........A..........A........... GGTGAATGGTGGGAAAAGACAGGAAAGCCTGGT 298647 31 71.9 0 A........A....A.....A.A.-..C.C.G | ========== ====== ====== ====== ================================ ===================================== ================== 12 32 97.1 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTTAGCGCTTTCTACGTCACATTTTCTAATTGCTGTCGCACTCTACATGAGTGCGTGGGTTGAAATCTGAAGCGTCGCTGACTTTTTTGGTCAAAATAGGTCGCACTCTACGTGAGTGGGTGGATTAATAATTGCGAAAACATAACCCTGCCTCCTGCCTCAGTAGTCATGAATCTAAGTGAATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGGGTGAAAACAAAATTCTATATAGAAACTTAAGGATTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : GTTTCTGCGAATTACATAAATTCAAATATCTATCCACCTAAATCCAAGCTCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCGACAAAAGGATAATGACCTTTGCTGCGGTAGCGTAAATCAATGAACCGCACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATATTTTCATCTTGCTTAGCAATTTTCATAATTTCAGTATCAGGGACCGGCACTCGGTTAAAGGTGTCTAAAATGACGACTTCTCCATTCATGCTGCGCCCAACATGGAAAGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATTGTAGGCGAAATGATAATCTCTTCAATTTCATCGAATCGTGCACGCAGT # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //