Array 1 245-16 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGLW010000039.1 Cohnella lubricantis strain DSM 103658 Ga0454156_39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================ ================== 244 24 100.0 27 ........................ GAATACACGCTCGCGCGCCGGCTCTAC 193 24 87.5 28 G...........G........A.. GTACACGCACAACGCGCATTACCTCATA 141 24 100.0 27 ........................ ACCCCCGAAACGGCGCGGCTCCGCCAC 90 24 100.0 27 ........................ GAATACACGCTCGCGCGCCGGCTCTAC 39 24 87.5 0 G...........G........A.. | ========== ====== ====== ====== ======================== ============================ ================== 5 24 95.0 28 CAAGGCACAAAAAGTGCCTTGTTC # Left flank : AGGCCGGGCGATCACCGCGAGCACGTGGACGTCGTCCAAATGGGGCAACACCGCGCCGGCGGGCAAGCGGCTCATCCGCTGCTATGTCGGCCATTCCACCGATGCTTCCGCGCTCGACTTGTCCGACGAAGAGCTGACGGCAGCGGTGAAGCGAGACCTGCGCGAACTGATGGGGCTGACGGCCGAGCCGGAGTTCATCGAGATCACGCGCTTGCGCCGCTCGATGCCGCAGTATCCGGTCGGCCATACGGACCGGATCGCCGCGCTCCGGCATGAGCTGGCCGAGCGCTTGCCGGGTATATACGCGACCGGAGCGCCGTTCGACGGCGTCGGCTTGCCCGACTGCGTCGAGATGGCGAAGGCGGCTGCGGAGCAGATGCTGGGAGATTGAGAGAAGCCGCCGCACCGGCAACAATAGACTTTCCGAACGGACCGCGCTGCGGTTATGATCGGAAAGTCTTTTGTTGAGATGGCAGCGGAGATGGGAGCGCCACTGCCAC # Right flank : CGTACACGCACAACGC # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.10, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGGCACAAAAAGTGCCTTGTTC # Alternate repeat : GAAGGCACAAAAGGTGCCTTGATC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 11994-8012 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGLW010000047.1 Cohnella lubricantis strain DSM 103658 Ga0454156_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =========================================== ================== 11993 33 100.0 36 ................................. GCGTCCAGACTCCCTGAAAAGGATGTCTCTCGGGCA 11924 33 100.0 34 ................................. CCAAGGACGATGCAGCAGCGCAGAACAAATTCAT 11857 33 100.0 35 ................................. GTACAACGACAATTCCTCCGGCCAGCTAGATGACC 11789 33 100.0 35 ................................. AACCCAACGACCTCGGAATCGCTCGTAATCACAAG 11721 33 100.0 35 ................................. ATTGAGGATTTGAAGTCTGCCGGTCAAAACATCGT 11653 33 100.0 36 ................................. GTCGAGCTCGGCAAGCAAATCCCCGGTTACGAACTC 11584 33 100.0 34 ................................. GATCACCGCTGCCGTCAATAAGGTCTCCAAATCA 11517 33 100.0 33 ................................. ATTTCATCCGAATCGTCTTCCGGATCCATGAGC 11451 33 100.0 33 ................................. CTATCGTCGCTTCCTCCGCAGGTGCAACAACTG 11385 33 100.0 35 ................................. CCCGGAACTGGCTTTTGTTGATTCCCCGCATAATA 11317 33 100.0 36 ................................. ACGAATTGATCGGTCACAGTGACCACATCAATTGGC 11248 33 100.0 33 ................................. CATACGATCTCGCCGCGCCTCTCCATAAGTTCA 11182 33 100.0 32 ................................. ATCAAAGAATGGCTGAATTGACGCGTAGGATC 11117 33 100.0 33 ................................. CGACTATGCCAAGCGATTACGATGACGGTCCAA 11051 33 100.0 36 ................................. TTGGCATTTGCGGCAATACTTCGGACCCTTTTTATG 10982 33 100.0 34 ................................. AGCACTTTATTTTTCCTTCTGTAACATTAGTTCC 10915 33 100.0 35 ................................. GCTTAGCTCTAATTCCGTGGGCTGATAGTTCCTCC 10847 33 100.0 36 ................................. ATGACCATCTGGATGCCATCCCCATCGAACGATTCG 10778 33 100.0 35 ................................. GATCAGAAGAAGGGCATAATGGGCCACACCATTAC 10710 33 100.0 34 ................................. AGCGTCGTAACCAGGCATCTTTGTGTCATAGAAG 10643 33 100.0 37 ................................. CAAATACAAGAATTGGGAATCATTCGCCAATGATGAT 10573 33 100.0 35 ................................. TTAACAAGGGCGTCGAAAGCTTGCGTCTCTGCTGC 10505 33 100.0 34 ................................. CTTGATATTAGGCGCGTATTCGGCTGTGATAGCA 10438 33 100.0 34 ................................. CCTGTGTAATCCGACATTAGCCCGCCCGCCCTTC 10371 33 100.0 33 ................................. TGATCCCTCCCTTCTAGATAAAAAGAGGGAAAG 10305 33 100.0 36 ................................. ACGCCGGACTTCGCCGGAGCGACAACTTTAGCCATC 10236 33 100.0 37 ................................. CCTCATTACACCGAGGAGACGCGCAAAGATATTTTAA 10166 33 100.0 36 ................................. ATATTAGCCATGCCATGCAGAGCATCCATGACGTCC 10097 33 100.0 37 ................................. ACGAAGCAAGCGAGCTATTTGGATCAAGATGTTACGA 10027 33 100.0 35 ................................. CCCAAGCTCTCTAAGCGCTCTCCTTGGATGCCGTC 9959 33 100.0 37 ................................. CAGATCGCGACCGTCTTCGCCTTGATCGCGTCCCAAT 9889 33 100.0 36 ................................. CAGACGTCTCCCAGCCAATCGACGACCTTATCCCAG 9820 33 100.0 36 ................................. CAGAGTGCGCTGGGGATTGCAAGCTTCGGCTTCCCA 9751 33 100.0 37 ................................. GCAAAACAGAAGAAACTCTGTCACCTTGTATTGTCAA 9681 33 100.0 36 ................................. GACTCGAGCTACTATTTTCTCTGCCTCACGGCACTC 9612 33 100.0 35 ................................. CGTATCTTCGCGCTGTCGCGGTCCACGCTTACTAT 9544 33 100.0 34 ................................. ATTATTTCGTCGAGCGATGAAGTCATTAGCAAGG 9477 33 100.0 34 ................................. CGGGATCACCTGTCCATCCAGAAACGCCGACATA 9410 33 100.0 35 ................................. TCGGCACGATGGACAATAGTAAGCACGAGGGCCGC 9342 33 100.0 35 ................................. GTGATATGGATGGAGTTATCGCAAACCTTCATAAT 9274 33 100.0 39 ................................. TGCTTAGACTCCCCGTAAATGGGATGCTTGTCAGTGGAA 9202 33 100.0 35 ................................. CCCTTGTATTCGGTGTAAAAAAACATATAATAAAC 9134 33 100.0 33 ................................. CTTTCGCCGCCGCATTGTTCGCGACGCGGAAGC 9068 33 100.0 34 ................................. CGGAACCATATTTGTGGAAGAGTGAACCACCTCA 9001 33 100.0 35 ................................. CTGTCACTTCCTGCAATACTTGGGCTTCCGGCCGC 8933 33 100.0 36 ................................. CTTAATCCTTCATGTAGAAGCCACACTCGAACCCCG 8864 33 100.0 34 ................................. ATCTTGACCGGCACCGTTCGGTCGATTCGCTCCG 8797 33 100.0 33 ................................. CACGCTGACGGCGATCGATCTGCTGCTAAATGA 8731 33 100.0 35 ................................. TCATCGCCGCCGTCGATAGCTTGCGGCTCGAAGAT 8663 33 100.0 36 ................................. GATGCGATCCACGAACGGGCTAATGAGATCATGGTT 8594 33 100.0 33 ................................. TCCTCTCATGGGTTGGCTGAATTAAACGGTAAA 8528 33 100.0 35 ................................. TTCGCATTCAATACCAGTCCAATGACCCAGACCAA 8460 33 100.0 37 ................................. TCGACACGAGCTTGCGTGTCGTACGCGACGATACGCG 8390 33 100.0 35 ................................. GCCAAAAGTGGATTGTCAACGAGTAATTCGCTTTT 8322 33 97.0 33 ..............A.................. CTCAGGCGCCAGGCAATCGAAACATCGCTCGAA 8256 33 97.0 43 ...................A............. CACCCGCAGCTCGGCGGCTTTGACCGGATCTCGAACCGCTTGA 8180 33 100.0 36 ................................. CCAGCCCCTAACTTCCAGGAAGCCGTAGTACCAGCG 8111 33 100.0 33 ................................. CAGTTATAGCATTGATGCTGTTGCTATTGTGTC G [8094] 8044 33 90.9 0 ..........A..A.A................. | ========== ====== ====== ====== ================================= =========================================== ================== 59 33 99.7 35 GTCGCATCCCGTACGGGATGCGTGGATTGAAAT # Left flank : GGAAGTAGGTGTTCGAGATGCTAGTGTTGATCGCGTACGATGTAAGTACTGTCAACGCAGCCGGGCAGCGAAGGCTGCGACAAGTGGCTAAGGCGTGCCTAGCTTATGGTCAAAGAGTGCAGAATTCTGTGTTCGAATGTGTGGTGGACGCTACCCAATTCGCTGCGCTAAAGTTGAGGCTGATTGAATTGATCGATGAGGAACAAGATAGTCTTCGGTTTTATCAGTTAGGCAACAACTACAAGAGTAAAGTGGAGCACATTGGAGTGAAAGCATCGTTTGACCTGGAAGAGCCATTAATCTTGTAGGGAGAATCGGTGCGGAACCGGAGTGCGAATATGGAGTGAACATGGTTTAGTAGGGAGTTCCGCACCGGATAAATGGAAGAAATAGGTTGGGTTTAGCTTTACAGTAGGTATTTAAGTGACGAATAGAATGTAATTGTTGCCGATTTGCGATTGGTTGGGTATGTTGTTATGTCAAATCGATTGAAAATCGCT # Right flank : AAGCTATTGTCTGTGGACGGAGAATTTCAGTCGTCCTCACACATTCTTCCAGATCAATTTCACACCGCCCTAACCCCTTGCCGCTGGCGACCTCTTATTCTTTAGTCCCAAGCCAAATTAGCCCCATTATCCCAATGATTAACACCGTTAATCTGTGCATTCCGTCTCATGGCATTCGACACCAGTCCCCCTATAATGAACGGTAGCAGGGTATTCCTGCCGTACCATCCAACTATAGGAGGACGAGGATATGAGAAAGAAATTGCAGATTGCACTTGCCGCATCGATGTTAATCGCCGCCGTTCCTGTTACTGCGAATGCCGCCGTTCAGGAAGGTTCGGCCCAAGTCGTATCCTCCGTCAGTTTCCGAACAGCGCCAACTACCTCATCAGATGTCATGCGTTATTTGAAGAAAGGCGAGTCGGTCTCCGTTCTGGAGGAGACGAACAGCTACTGGCTGCAAGTGCGCGACGCCTCCGGACAGATCGGCTACATATCTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGTACGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //