Array 1 152240-150155 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOGI01000007.1 Salmonella enterica subsp. enterica serovar Newport str. Shandong_3 contig007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 152239 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 152178 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 152117 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 152056 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 151995 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 151934 29 100.0 32 ............................. GCTGAAGCGCCAGGATACCCTGAAACGCTACC 151873 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 151812 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 151751 29 100.0 32 ............................. GCATTCCCGATCGTCAACCAGAGAACTGGCAC 151690 29 100.0 32 ............................. AAACCCGCGCCCGTGAGCTCGATATGCTCGGC 151629 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 151568 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 151507 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 151446 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 151385 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 151324 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 151263 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 151202 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 151141 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 151080 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 151019 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 150958 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 150897 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 150836 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 150775 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 150714 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 150653 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 150592 29 100.0 32 ............................. CCGGACGACCCGATGGGGATCCTGCCGTTGCT 150531 29 100.0 74 ............................. GGAGTATTTGAAATGTACTATAAGGACTTCATGTGTTCCCCGCGCCAGTTCTTCAGCTGGCAACGACAGAATGC 150428 29 100.0 32 ............................. GGGGCTTGTTAATATTTCTCTCACTGACTACG 150367 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 150306 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 150245 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 150184 29 96.6 0 ......G...................... | A [150157] ========== ====== ====== ====== ============================= ========================================================================== ================== 34 29 99.8 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 169180-168909 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOGI01000007.1 Salmonella enterica subsp. enterica serovar Newport str. Shandong_3 contig007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 169179 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 169118 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 169057 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 168996 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 168936 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 94.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //