Array 1 222703-224194 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZM01000001.1 Salmonella enterica subsp. enterica serovar Stanley strain BCW_2782 NODE_1_length_443318_cov_3.9323, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 222703 29 100.0 32 ............................. TTAGTCGCACCACCGGAACCTACCTGCGCCTC 222764 29 100.0 32 ............................. TTGTCATGCGGCGCTGCGAGCGTGCGGCCTTT 222825 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCGCACGCCCTTA 222886 29 100.0 32 ............................. GGCTAGCCTACCCTTTAAGGGGTTCCACAACG 222947 29 100.0 32 ............................. GCTGCCAGCACTACTACCCGCCGTCGTTCCGC 223008 29 100.0 32 ............................. CGTTTATGGCCGGTGCAAAATTTGGTGCTAAT 223069 29 100.0 32 ............................. CGCCGCGAGGTGATCGAGATGCTTGAGGGTAT 223130 29 100.0 32 ............................. GTATCTCGAAGAGCGTCAAAAAAGCCGGAATG 223191 29 100.0 32 ............................. GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 223252 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 223313 29 100.0 32 ............................. TCGAGTTCTGGCATGTCAGACTGACGTATCGC 223374 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 223435 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 223496 29 100.0 32 ............................. TCAGCGTAGGTTGTTGACGTCCCCACCAGCCC 223557 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 223618 29 96.6 32 .............T............... TGGGAACCGTCAAGGCCCGAGGGTGACGGCTG 223679 29 96.6 32 .............T............... GATTGTTCAGATTGGGAATTTGACCAACGCCC 223740 29 96.6 32 .............T............... GTTACTGTATTATCTCTCGCATAGACCCGGCA 223801 29 96.6 32 .............T............... CCTGAGGAGATATTCACCTTCCTGCATTTCAT 223862 29 96.6 32 .............T............... TCTGGTGGCTGCCTCATATTGTTGCGCATCTA 223923 29 96.6 32 .............T............... AAAAAAATGCGATCGGTACTCAACCCGGCCAC 223984 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 224045 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 224106 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 224167 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTAGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 240318-240774 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZM01000001.1 Salmonella enterica subsp. enterica serovar Stanley strain BCW_2782 NODE_1_length_443318_cov_3.9323, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 240318 29 96.6 32 ............................T GTCCCGTACGAGATACTCCAGCGCCTGCCCGC 240379 29 100.0 32 ............................. GAGTAATGGATGCCCTGCCCGGCGATTGGATT 240440 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 240501 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 240562 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 240623 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 240684 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 240745 29 93.1 0 A...........T................ | A [240771] ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //