Array 1 101475-101141 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAUI02000016.1 Escherichia coli strain ECO37 16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 101474 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 101413 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 101352 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 101291 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 101230 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 101169 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : AGATATTTCTGGCGTTGGCCTGCGCGTGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1374-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAUI02000006.1 Escherichia coli strain ECO37 6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1373 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 1312 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 1251 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 1190 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 1129 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 1068 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 1007 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 946 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 885 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 824 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 763 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 702 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 641 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 580 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 519 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 458 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 397 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 336 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 275 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 214 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 153 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 92 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 31 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.2 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 28320-27072 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAUI02000006.1 Escherichia coli strain ECO37 6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28319 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 28258 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 28197 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 28136 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 28075 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 28014 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 27953 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 27892 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 27831 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 27770 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 27709 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 27648 29 100.0 31 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTA 27588 29 96.6 32 T............................ CCAGTGGAGCCGCCGCGAATTTACACACGATT 27527 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 27466 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 27405 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 27344 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 27283 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 27222 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 27161 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 27100 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //