Array 1 178881-181604 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAYA01000021.1 Brachyspira aalborgi strain PC4597II PC4597II_contig21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 178881 31 100.0 36 ............................... TATTCTCCACACACTATATATTTTAATTTATTTTTA 178948 31 100.0 36 ............................... GAAATTGGTATCGCCTGAGGTTCTCCCAGCACTGGA 179015 31 100.0 37 ............................... TTATCAGATGAAATCGGAAGAACATCGCTCGCACACA 179083 31 100.0 37 ............................... GGCATTAAAATTGTGGAGTATACTGGATATATTAACC 179151 31 100.0 37 ............................... TATATTTTTTGTATTTCTTCAGCCGCTTTACCGAAGT 179219 31 100.0 37 ............................... TTTTATTTTTTGTGCCCTCCGAAGCCCCTAATTTTTC 179287 31 100.0 36 ............................... CGCACCACGCCTGCATCCAAAATCACACTCGCCCAT 179354 31 100.0 36 ............................... ATTATCATAAACTGGTCTATACATTAATGTTTTGGA 179421 31 100.0 37 ............................... GTTATTTGGTTCGTTATATAATCTCTTTGTATTTTTG 179489 31 100.0 37 ............................... TCATTTTCTAAAGTAAAACAATCAAATAAACTTTTTT 179557 31 100.0 36 ............................... TTAGTCTGTTCATTCCTGCTGCTTGTAAATCTGATG 179624 31 100.0 37 ............................... AATTCTAACATCATTCTTGTTGATGCTTCTTGTTTTC 179692 31 100.0 37 ............................... TTTCTATCGTTTGTATTAGGTGCTGTTTGAAATACTG 179760 31 100.0 37 ............................... GCTATAGCATTTATTAAATGCATACTTTCAATCGCTA 179828 31 100.0 36 ............................... TTCGCATAATCATTTTATGACTATGCGAATGGGTGG 179895 31 100.0 35 ............................... GCAGTCAAATAATCTTTACGCCATGCTCTCGGCAA 179961 31 100.0 37 ............................... TTGTTTGTTATCTCCTTATATAAGTTTTTAATTTTTC 180029 31 100.0 36 ............................... TTTTTTTTACTCTCTTTATTATATATCATTATCATT 180096 31 100.0 37 ............................... GATATTGGTATTGCTTGAGGTTCCCCTAATACCGGGT 180164 31 100.0 37 ............................... AATGCATCTAGTTTTACTCCGCTTACATCTAGATTAT 180232 31 100.0 36 ............................... GCTTCTTTAGCAGCGTTTATTGCTTGCTGATTAATT 180299 31 100.0 35 ............................... GCTATGATTGATGTAATCATTGTTATTACTTCTGG 180365 31 100.0 36 ............................... AATATTGTAGCTTTTTAATATACAATGTGAACATAT 180432 31 100.0 36 ............................... TTTTTGAAGTGCGGGTATCGGTCTTCAAAGGCTATT 180499 31 100.0 36 ............................... AATTTCGTGTTGCTTGATGCTATTACTTGTTCTACA 180566 31 100.0 37 ............................... GAATCTCACTTTGAATCGTGAGAATGATGGACTTATA 180634 31 100.0 35 ............................... GCATTAGTATTGTGCTGTATACAGGATATATTAAT 180700 31 100.0 37 ............................... TATAATAGACTGCTCTTACATCTTTGACCGCTTCCAT 180768 31 100.0 37 ............................... TTTTACTACCAGCTTTATTTTTCCTCACAATTCGTGA 180836 31 100.0 36 ............................... CTTACTATATATTTTAATTTATTCTGTTCTAATTTA 180903 31 100.0 36 ............................... ACCTTTTTTTAAATTTTGATAGTCTATTTTTTATTA 180970 31 100.0 36 ............................... GATATAGGTATTGCTTGTTGTGTGCCTAGACTTTGT 181037 31 100.0 36 ............................... GCCGAAGCCCCTAATCTTTCGATTAGATTCATTTTT 181104 31 100.0 36 ............................... ATGCGCACTTAAAAACTCGTCATCTCTTATTCCTGC 181171 31 100.0 36 ............................... TTAGTTTTTTTATTTTTCATTTTCTCTCCTTTAAAC 181238 31 100.0 37 ............................... CAATGGGAATTGCCTTTTTTTACTCAAGACAAATATT 181306 31 100.0 36 ............................... TAATTCTATCGCATGCATAATCGCGCGTTACTAAAT 181373 31 100.0 36 ............................... AAAAAAAGTTCAACCTCGTTATCGCCTCCGACTTTA 181440 31 100.0 36 ............................... TAATTCTATCGCATGCATAATCGCGCGTTACTAAAT 181507 31 100.0 36 ............................... CTATCTTTTGAAGTTTCTTTTTACAATCTTTCAAAT 181574 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 41 31 100.0 36 ATAATAAATCTAACCATATTGGAATGTAAAT # Left flank : ATTTGCTCGGAGAAAAAGAATATTCCCCGTTTAAAATATGGTGGTAGAAATGTATATAATTTTAATATATGATATTCAAGTAAACGATGAAGATAATCCTTATGTATTGAAAAAAGTTTTTAATATTTGCAAAAGGTATCTTAATCATATACAAAAATCGGTATTTGAAGGCGAACTTTCAGAACCTAAATACCTTAAATTAAAAGAAGAGCTCTTTGACATATTAAGAGAACATAAAGACTCATGTATAATATTTAAAAGCAGAAACGAAAAGTGGCTTGAAAAAGAGTTTTTAGTAAAAGAAGATATTGACAAAACTTCAAATTTTATATAAAATACAAGTATGTCGATGTATAATCTATAATAATTTGCGGATTATCGACAGACGATTTTTTAAATTAATGTCGTATTTTGTATTGTTATATTATTTTATATCAATACTTGTATCAAATTAATATGTAGAAAATATTAGTTTTGCATATTTCAGAGAGAAAAAACGG # Right flank : TTTATCTTTTTGACCATTTTCAAATTATTTATAAAATATTTTCATTTGTAAAAATAATATTTTTTTAAAACTGCATGATAAAAATAACCTATTGCCACAGATATTATGATCAATAATTTAAATCCAATCTAAAATTGAGAGGATATAAAAATTTAAAGCCATTATCCCCCCCCCCCCTATAAAGTTATCAAAGAATTTATTTCTGAAATTCTCTCGCCCTTTTTAACGGGAATAAACCAAGCCAAATTATCAACTTTTTCTTTATTCATTTTAATTGAAATTCTAATTCCAAATAAAGTTAATCTCAAATACTCGTTATTATTCGATATTCCAAAAAGCGTCCACCAATTACAATTTAATCTCAATTTTTGATAATCATTATTTGAAATCGTTTCTTTATTTTTAAGCGATAATTCTCTTTCTAATCTTTTATACTCGAAAGAAACAGGCTCAAGAATGCAAGATTGTTTTATAAATGTTTCTCTATCTGAAAAATTATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAATAAATCTAACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [75.0-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //