Array 1 163717-162222 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKIZ01000002.1 Salmonella enterica subsp. enterica serovar Paratyphi B strain 2008CEB2743SAL scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 163716 29 100.0 32 ............................. GTACGTCGAAGTATGCTGAATTACAGGAAGGC 163655 29 100.0 32 ............................. CCCGCCGTCTGTTTGCGGTTTTGAGCGCCCGA 163594 29 100.0 32 ............................. GCCGGTCGGCGGTATTACTCAATATTTATACG 163533 29 100.0 32 ............................. TTAGCAATAGGCTACGGCGATAAAACTTTTAA 163472 29 100.0 32 ............................. TTTCGAAATTCCTGCTCGATGTCGACCGCCGG 163411 29 100.0 32 ............................. GGATAAAGACGACGTTGAAGAAGCCGAACACG 163350 29 100.0 32 ............................. CTGCTGAGGGCGAATAACAAAATCATCAACCA 163289 29 100.0 32 ............................. CCTTGCTAGTGGGGAAGCGCTACGATTCACGA 163228 29 100.0 32 ............................. GTGAGCGCCGCCTTGGTACTGGCCTTTTGAGT 163167 29 100.0 32 ............................. GGTATGTTTCCGAAGACCTCGGCTGGCCTTTT 163106 29 96.6 33 ............T................ CAACGTTTCACTGTCGAGATAGCTATTGTCCGC 163044 29 100.0 32 ............................. GCAAACGAGTCTGTTTTGCAGACGTGTCTGGA 162983 29 100.0 32 ............................. CCCCGGCCTGATCTCGATCGGTGACGTAGGCA 162922 29 100.0 32 ............................. AATTTGAATGCACTGGTATTAACGACGAATAT 162861 29 100.0 32 ............................. CGCGGTCATACTTCAGGATCTGCTCTGTTGTT 162800 29 100.0 32 ............................. CCATTCTCGTTGTCGGTCATCTAGCGGTTGCG 162739 29 100.0 32 ............................. CCCAGTCAGGGGCGCGATATTGCCGCCGTGTT 162678 29 100.0 32 ............................. TATCGAGCGTTGTTTCGGTGCGGGCCTGAGCT 162617 29 100.0 32 ............................. AGGGCTACCCGGTTGCGCGTATTGATGCCCCG 162556 29 100.0 32 ............................. TTGTGCGGCAACGCCCGTTTTTATCGGTGGAC 162495 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 162434 29 100.0 32 ............................. TTTGCCGCTGCTCGGTGAGGGAGCGTTTCATA 162373 29 100.0 32 ............................. CGCAACTATCCATGCAAATATTTCCATTGCTA 162312 29 100.0 32 ............................. GCAGCACTGGCTGGAGTGGCTGGCGAAAAATC 162251 29 96.6 0 ............T................ | A [162224] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180244-178995 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKIZ01000002.1 Salmonella enterica subsp. enterica serovar Paratyphi B strain 2008CEB2743SAL scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180243 29 100.0 32 ............................. ACGCTGGCCGAAAACGGATTTTCAATCCGCAT 180182 29 100.0 32 ............................. TATTCATCTGCTGCCGCCTGGTTTGTTTTATC 180121 29 100.0 32 ............................. GGATCGGCAAACTTGTTTTAACGCCGGACAAC 180060 29 100.0 32 ............................. CCCCTTCTGATCCCCTTTCAATTTCGCGCTTA 179999 29 100.0 32 ............................. TATGATCCGCCATAGAAACAAATACAAAAATG 179938 29 100.0 32 ............................. CTGTTTTGCAACCGCATCCCCGGATTCGGGAT 179877 29 100.0 32 ............................. TTGCCACAACCACAATGGATCAGGAGCAATTA 179816 29 100.0 32 ............................. AATTATCGAAAGGAGTTACTCAGGGGGGAGAC 179755 29 100.0 32 ............................. CAGCGGAAGCGATCAGTGGTCTCGATACGGAA 179694 29 96.6 32 ...................A......... GGCTCAGGTTGATGATTCTCATGAGACACAAT 179633 29 100.0 32 ............................. GGGTGATCATGACGATCCAGAGCATATTGCCC 179572 29 100.0 32 ............................. GATTGAGAGAAGGGCTTGCTTAGCTTCCTTCC 179511 29 96.6 32 ..................A.......... TGGGGCTGTAAGGTCCGTTTAATATCCACTCA 179450 29 100.0 32 ............................. TTCGTTAATTATATTACAATACAAATCATAAC 179389 29 96.6 33 ............................A GCCTTCCGGTACGTCGTCATTTTCAGTCAGCGG 179327 29 96.6 32 ............T................ CAAAATTAATGTCCAGGACCTTATTAAGTTAC 179266 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 179205 29 100.0 32 ............................. GCGTTAGCGCGTTACATCCGGTTTGAGGCTGA 179144 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179083 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 179022 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACATGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //