Array 1 728337-727536 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUVQ010000001.1 Listeria ivanovii subsp. ivanovii strain ICDC-Liv199 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 728336 29 100.0 37 ............................. AACGACGAAATGAACAAGTTATATAAAAAACATCCAG 728270 29 100.0 36 ............................. TCAATTCCCTTGTTCGCTATAAACGGATGGAATAAA 728205 29 100.0 34 ............................. GGGGGAACAGCGACCGGTTTCGGCTCGGATATTA 728142 29 100.0 36 ............................. TAGCTTTGCATTTTTTCAGTGATAGAAGTCGCATAT 728077 29 100.0 35 ............................. CCACATATAAAATTACGCCTCCTAATTTTAGTAAT 728013 29 100.0 35 ............................. AACGATATTGGTACAAAAGTAAATTTATCGTTTTT 727949 29 100.0 36 ............................. TTTTAAAGTAAGCTTCTGCTTCTTTAAATGAGGTAT 727884 29 100.0 35 ............................. AGAATTCTTCTGTCGGATACATTTGAAGCGTTCCG 727820 29 100.0 34 ............................. TTCTTCTGGCGTCTTCCAGTTTGTCATCTGCTTT 727757 29 100.0 35 ............................. AGAATTCTTCTGTCGGATACATTTGAAGCGTTCCG 727693 29 100.0 34 ............................. TTCTTCTGGCGTCTTCCAGTTTGTCATCTGCTTT 727630 29 100.0 37 ............................. GTCAAATTGCTCATTGAAATAAAGCGGGTTTGTGATT 727564 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ===================================== ================== 13 29 99.7 35 GTTTTAATTACTTATTATGAAATGTAAAT # Left flank : GTTTAAAATTTGGTGGTAGATATATGTATGTTATCCTAATTTACGATATTTCGGTGGAAAATGGAGGTGCCAAAGTTTGGCGCAATGTATTTAAAATTTGCAAAAGATATTTAACACATGTTCAAAAATCAGTATTTGAAGGGGAAATAACTCCAGCGCTTTTAGTGAAATTACGAATGGAATTAGATAATTATATTCGTGCAGATGTAGATTCTGTGATTTTGTTTTCTAGTAGACAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTAGCAGATGAAAAAACATCGAATTTCTTTTAGGTGGCTTGTTTCTGTCGACCTCTAGTAGTGTGAAAAACACTAGGGATCGACAGAAATGCGGAATTCGCTGGAGGAGAAAGGGTTTCAGAGATTTCGATTCTTAAAAAAGAAAAAGTGAAATAAGTTTTCCACATTTTAGCGTAGGTCGACAAAAATAGGCCCTTGAGGTAAGATGGGAGTAGGGTAAAAAGTTGACGG # Right flank : ATTTTTTGTGTCGAGCCAATTAAATTGTGTATTTGAATTTTAGCTTCTTAACATTAATAGATAAAATATTCATTGAATTTCTAAATCTCTTTGTCAAAGTAAATGTGGGAAATAAGATGGTATAGGCTAGAAGAAAACAAAGCAAAAGTTTGCGAACTAGAAATCCAGTAAGTACCTTGCAAAAGAAGTAAAGCGCATGCGGCGAAAAGACATCACCGAACTAAATGGTTATATTTACAGGTTAAGAGGTAGCAATACAATAGTAAAAATTGGCCCGAAAAATCAAAGGAGCAATCACAGACTCAGAGGACTAACGAATATAGCGATACCTTTAGAGCAGATAAAAAGCTTTAAGGGTATTTTTATCTCCAAAAATCTCTCTTTTACTGGCCCATCCCCATATTCCTAATTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAGCAACATAACTCTAAACTTATAATGAACGTAGTAAATGAGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 746663-746441 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUVQ010000001.1 Listeria ivanovii subsp. ivanovii strain ICDC-Liv199 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 746662 29 100.0 35 ............................. CTGTATAAATTTCATCCGATGAATTTCGACATCGT 746598 29 100.0 36 ............................. AAATCGTTGTGAGATAATTATTTCAGATTGAGAATT 746533 29 100.0 35 ............................. ACATACAAAGCGGTTTGGAAATTTTCTGAACCAAC 746469 29 82.8 0 .......C....C..GA.....A...... | ========== ====== ====== ====== ============================= ==================================== ================== 4 29 95.7 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : TCAGCTGACGTTCTATTAGAAAAAGGTGCTGTAGAAGTAATCGCCTGTGCAACTCATTCAGTTATGGCTGGAGATGCAACAGAACGATTACAAAACTCACCAATCAAAGAAATAATCATATCCGACTCCATCGACCTTCCAGAAGATAAACAATTCGAAAAGCTAACAACTATCTCCATTGGTCGAATCTTAGGTCGTGCAATCGAAGGGGTTCAAGAAAATCGCTCGTTGCATCCACTTTTTTAAGGAGATTAATAGTAGGAAATTGGGAACAGGGCTTCTATTGGGGCTCTGTTTTTTTATGAACTATTATCTGTCGACCATCAGTAGTGCAGAAAACAGGGGAGGTCGACAGAAAACTGGATTGACTGTGAGAGAATGAGTTTGAAGTTTTTAAAGTTAGTTATTAGTAGTTAGACATTCAAATTTCACCCGATTTGAAGAAGGTCGACAATAATAGGCGTTTGAGGTAAGATGGGAGTAAGGAAAAAATGAAGCGG # Right flank : TTGTCTAACCTTTAAACATATCTACAATATTAGCCAACTCAAAAACAACAAGAATACATAAAAAGGGAGGAAACACCAATGAAAAAAGCGCTTTACCCCATCCTATTGCTATTGATCCTACTAGCCAGTTGCTCCACGCAAGATGAAACTCTATCCCCGAATACCAAAATTCATAAAAATAGTGTCATTAGAGCTGATTATAAGATACCACAAAACCTGGCAGAACTAGAATCAGACAGCGAAGATATTGTCCAAGTAAAATTAATACGAAATAAAGAAATTGGTAAAGGAAACAACAGCTCAATAACGGAAGTAGAAATAATCAAAAACTACAAAGGCAGTTTTGAGCCCGGTGATAAAGTGGATATTTCAGAACCGTGGCTTTTAACTTCAGGAGAATACCAAGCGGTGGAAAATTACATTGCACTCGAAAAAGGTCAAGAATATATCCTGTTTTTAAGTGGTGGACATGGCACGGATAAAGTAAGCTCAATCACGAG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //