Array 1 12595-9346 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015029.1 Frederiksenia canicola strain HPA 21 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 12594 33 97.0 35 ................................G TTTTGAAAGCTGCATAAAATGCACCGCTTGCACAG 12526 33 97.0 34 ................................T ATATCGGTGCTAAGTCAGTTAGAGTAGTACGTAA 12459 33 100.0 33 ................................. CTATCCACATACATGCGCAACCATCTATCGTAC 12393 33 97.0 33 ................................G TAATCGTCGTTAGCGATTTCAAAACCAGATACT 12327 33 100.0 33 ................................. TGAAATACGCTACGCTTAAACTCAATTTTGCGT 12261 33 100.0 34 ................................. TCGTGGTATCTAATAGACAGCTCCGTTTATTGTC 12194 33 97.0 35 ................................T GGCGATATGCACTTAGGACATACGGCTATTCTAGG 12126 33 100.0 34 ................................. AATGACTGTAGTTTATCCTCAATGTGGTCAACTA 12059 33 97.0 32 ................................C AATGCCAAAGATATTCAGATGTTCGGTCAGGT 11994 33 97.0 34 ................................C AATCGACATACAAAAGGTGTGTCATAAAACAGAT 11927 33 97.0 33 ................................G ATCTATTTTTCTCGATCGATTTATTTTTTTTCT 11861 33 100.0 33 ................................. TTCGTGATCCCCCCGATTACGTCCTCGACCATA 11795 33 100.0 35 ................................. CCTAAGCTCAAAAAATCTCGCCCCTCATTTGCACC 11727 33 97.0 35 ................................T CAGCAGAGATGATGTCACCTATGCGTTGAGTAAAC 11659 33 97.0 36 ................................T CGGTAATTGGTACTACCAGAATCTCATGGAACGGAT 11590 33 97.0 35 ................................G TTTATACTGGTGTACGTAGATGATATCAGGTTTGA 11522 33 100.0 34 ................................. TCATCAGAAGTTTGCTGATAGACATGGTGCACCT 11455 33 97.0 33 ................................C ATACAGCAATGGCACGAAATACAGATGCCATAT 11389 33 97.0 33 ................................T TCCTACGCTCTGAGCAAATCAAAGCTAACTGCC 11323 33 97.0 34 ................................C CTTCACTAATCAAAATCTGTTGCGTGCGGAAAAC 11256 33 100.0 34 ................................. TTTTTACGTTTTAGGCTGATGCAAGTACCTCCTT 11189 33 100.0 33 ................................. CGATAAGCACTCTCTAATGAAGTAAGAGTCTGG 11123 33 97.0 36 ................................T GCTGTATTTGAAGAAGACCTAACCCAACCACTGCAG 11054 33 97.0 35 ................................T TGTTGCAAAATGCAACGAACCTCACGCTAAAGGCG 10986 33 97.0 35 ................................C CAACATACTGACTGATGTTGTCTTTCGTGAGTAAG 10918 33 100.0 33 ................................. TTTAGGAATATATTTCCTTTATTTTTTTAAGAA 10852 33 97.0 33 ................................G CGATGCGGGGCGGCACTCGCTCAAAAATAGAAG 10786 33 100.0 35 ................................. TCGATCAGCTCTTCGGTGGCATCCATCACTAACGC 10718 33 100.0 34 ................................. ACTAATCACTGAAAACAAGGCTATTTTACTATGG 10651 33 97.0 34 ................................T CGATTTATATGCAAGACAAATCAATGTTTGATGC 10584 33 100.0 35 ................................. ATCTCTAATAGCACAAAGGAACACCCTTATTGGTG 10516 33 97.0 33 ................................T AGCTCATTGACTGCCTTTTTCGCATAACTCAAT 10450 33 97.0 33 ................................T CCTTTTGTGTGATTTGGGTAAATCATACGGCAA 10384 33 100.0 35 ................................. ATCTCTAATAGCACAAAGGAACACCCTTATTGGTG 10316 33 97.0 33 ................................T CGACACAGATCACAAAAATAGAGTTTGGTGGTG 10250 33 97.0 33 ................................C CAAAGAAAAAAAATCATTTGAGTTAAGTGAAGA 10184 33 100.0 35 ................................. AGTAAAGGGCGTAGAGCAAATAGTCCAAGCTCTGC 10116 33 97.0 34 ................................G CTTGATGGCGATCGGCAAAATTGCTGACCGCTCC 10049 33 97.0 36 ................................C ACAAGGTAGATAAATCAACTCACTATCCTGATAGCG 9980 33 100.0 33 ................................. GACTGGTAAAAAGCTTTGCGATCCATTGGCGAC 9914 33 97.0 33 ................................T ACGTTAATCAGCTTAATATCTTCGGGGTGGTAG 9848 33 100.0 33 ................................. TGCCCACCACTCTGAAGTTTTCACTCTGATAGT 9782 33 100.0 33 ................................. CGAGAAAAGTGATGTTATCCATTTTGCATGAGC 9716 33 97.0 34 ................................C AAGGCTTCAAAGGCAAAGTAATAGGTTGCCCCAA 9649 33 100.0 33 ................................. ACCACTGCCCCTGTTCGCACCCGAGCGGGGCTA 9583 33 97.0 34 ................................G ACCGACAAAGCTAATCTGTCGGCATTATTAGATC 9516 33 97.0 36 ................................G TCATATTTCTATCCCCCCTTTTAACATTGAAAATAT 9447 33 97.0 36 ................................C AAAATCGCATCTAGCAACGCATTCGGAATGGCAGTA 9378 33 66.7 0 ...........AATC.A....G.A.C.G..T.T | ========== ====== ====== ====== ================================= ==================================== ================== 49 33 97.5 34 CCAGCCACCTACGCGTGGCTGTGTGTTTAAACA # Left flank : TTAGGGAGAGAATGATGCTGATGTTGATAACCTATGACATTTCACTTGATGATCCTGAAGGTGCTGCACGCTTACGTCGTATTGCCAAACATTGCCTTGATTACGGTGTACGCGTACAATATTCCGTCTTTGAGTGCGATATCGCCCCCGATCAGTGGGTGAGACTCAAAGCAAAGCTTCTACAAACTTATAATCCAGAAACCGATAGCTTACGTTTCTATCATCTTGGCAGTAAATGGCGACGTAAAGTAGAACATCACGGAGCCAAAGCATCTCTCGATATTTTTCAAGACACACTTATTCTTTAACTCGCTAACCTATAGTTCTCATTCAAATGCCACGAGATTAGCGAACGAAAATAGTTCTTTAAAAATTAGGATGTTATGAAATTTTAGAAAGGGATATATTAGATATGATATACTCTTTTTTGTCATCATTGATGAGAGTTAGCGAATGATATAGCTTACAGCCTTGTTCAATAAACTCTCAGCAATGAGTGG # Right flank : TATGAGGAGAGTAGAAAGGCTGTTCCCTCGATCAAGTTAGCTTGAAACTCAATTTTCTAGGGAACAGATTATATTTGGGAGGAGTATTTTGCCGAAGCTACTTCACTGTTACTCGTGCAAATTTGCGCTTACCCACTTGGTAAACTGCGGTGGTGCCTGCTTGGATCACTAATTTTGAATCTTCAACTTTCTCGCCATCAATTTTCACACCGCCTTGATTGACAGAGCGGATCGCTTCAGAAGTTGACGCTACCAAACCCGCTTCTTTGAGCAAGTTCGCCAAGCCGATTTCGCCTTCAAAGGTAAATTCAGGCATTTCGTCTGGCATCGCACCTTTTTGGAAGCGGTTGATAAATTCTTGCTCTGCCGCATCGGCATCAGCTTCGCTGTGGAAACGAGCAATGATCTCTTTGGCTAACAGAATTTTTACATCTCGTGGGTTTTTGCCGTTTGCTACGTCGGCTTTGAATTGAGCGATTTCATCAAGCGGTCGGAATGAG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.52, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCACCTACGCGTGGCTGTGTGTTTAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //