Array 1 20439-19708 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKFM01000075.1 Lacticaseibacillus paracasei strain FAM18124 FAM18124_scaffold_0075, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20438 36 100.0 30 .................................... TCAGCCGGCCGAGTGAATCTGGCAACACCA 20372 36 100.0 30 .................................... TATGTACGCTGATCATAATGCGGATGTGTG 20306 36 100.0 30 .................................... TCCATTGTGACCAACGTGGTTGGCAGCGTG 20240 36 100.0 30 .................................... TGGCAAATTCGGCCAAGATGATGATTTTGA 20174 36 100.0 30 .................................... TACAAATGCGGGAGGTGTGGTGATATGTGA 20108 36 100.0 30 .................................... GCTTACAACACAGCGGAGAAGTTTACACGC 20042 36 100.0 30 .................................... CCGCCGAACGTTCACGCCCACATCACTCAA 19976 36 100.0 30 .................................... AGAATTGCAAGAAATGGGATTAATGCAATA 19910 36 100.0 30 .................................... ATACATACATGCCATGACGATGCTCATTTT 19844 36 97.2 0 .........G.......................... - Deletion [19809] 19808 35 75.0 30 -CAAA.....AT....A.G................. AGGAAATTAGAGTTCTTCCCGCAATTGATG 19743 36 83.3 0 C......................C.....A..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 96.3 27 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAAGATGGGGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATTGATTTACTCCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTCGAACAAATCATGAAATACTGCAACGTTCATTTCGATGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAAACGTTAACTAAACTAGGGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCTAGAGATTTCTTTGCGGTGACTGAACAGATCGGTGATACAGAACTTCAGGTCTTTCTCATCGAGTTCTCAAAAGTGAACCGAAAGAAGTACTTTGAGAAATGCCAGTATATCTATATTGACGAGGAGTTCGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACCG # Right flank : AAACAGCAGTGATATTAATATTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGATGTTTCACTATTTATTGTGTGAAACAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCGACCTCCTCTTGTGATAGAATTCATTATATATGAAATCGTTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGTAGTACGACCAGTCAGACGAGTAACGCTAAGGTGAAGATCAATACCGGCGCTGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGC # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //