Array 1 834-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQOM01000151.1 Burkholderia glumae 3252-8 151, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 833 28 100.0 32 ............................ TGTAGCGGGCGAATCAGTTGTGGTGCTCGTTG 773 28 100.0 32 ............................ TTCGTGTTCCGGCGCACGCTCGGGCCGATGAC 713 28 100.0 32 ............................ GGCGAATTGCCGATGGAACACGACGGCCTGAC 653 28 100.0 32 ............................ CGGTCGCCGACAAGCCCGCGCCAACGCTCATT 593 28 100.0 32 ............................ ATGCTTCTCCGAGCGGTTCGTGCACGAGGTGA 533 28 100.0 32 ............................ TCGCGTTGCGCCATGCGATAGTGAATCGGCTG 473 28 100.0 33 ............................ ACGGATACGGGCGGAATGCAGCAAGCCGATTGC 412 28 100.0 32 ............................ GATATCCTTCCCACCAGTCGGGGTATCGCCCG 352 28 100.0 33 ............................ ACTACCTCAATACGGACGGCGACGAAGGTATCC 291 28 100.0 32 ............................ AACTGAAGGCGCTGCAGGACGTGGTGAGCGCG 231 28 100.0 32 ............................ ACTGCGCAGGTCAGCGATAGTGCGGTCGGAAA 171 28 100.0 32 ............................ GTGAGCGCTCGCGCATCGATCTTCCATGGGTT 111 28 100.0 32 ............................ GTGGCTGGCGATGCGGACTTGAAGCGCCCCTT 51 28 92.9 0 ..........................GG | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.5 32 GTTCGCTGCCGTGTAGGCAGCTTAGAAA # Left flank : CTGGCTTGCGTGAGCTGATGGCGCAGTCGTGGTTGCAGGGAATGCGCGACCACGTTGCCGTGACCGAAGCCGCTCCGGTGCCGGCGGAGGCAATGCACCGGAGCGTGCGGCGACGCCAGTTCAAGACCAATGCCGAGCGCTTGCGCCGCCGCCGGATGCTGCGCAAGGGGGAAACGGCCGAGCAGGCTGCGGCGCATATTCCCGACAGCGTCGAGCGACGGCCCGAACTGCCTTATGTGCAACTGCGCAGCGCCAGTACGGGGCAGGGTTTTTGCCTATTTGTCGAGCTTGGACAAGCCGGGCGCGAGGCGGTGGCGGGGTCGTTCAACAGCTATGGGCTGAGTCAGGGCGCGACCGTGCCATGGTTTTAACCCTTTTCTGTGGCTGAAGCAGGGGGCTTTAAGAATCAAAGACTTAGCGAAGGGGTGAAAATTTGGGTGGTTTGCCTCTTTGGCGGGGATTTTCTTTTGCAAACAAGGTGTTGGGGGATTTTGGGGCTA # Right flank : GCCAGTTCAAAAACTCCCGAGAGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGTGCAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10258-10048 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQOM01000151.1 Burkholderia glumae 3252-8 151, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10257 28 100.0 32 ............................ TGGCCGGCGGCCGCCTGGGTCGCCTGCGCGGC 10197 28 100.0 33 ............................ ATATGGTCATCCGGAGCATGATGTGGAACCCAC 10136 28 100.0 32 ............................ ATCAGTCAAATACGACCGCAGCCCCCAATACG 10076 28 82.1 0 ...........C.C......T.C.A... | T [10050] ========== ====== ====== ====== ============================ ================================= ================== 4 28 95.5 33 GTTTGCTGCCGGGTAGGCAGCTTAGAAA # Left flank : CTCTCGGGAGTTTTTGAACTGGCCTCTTAGAAAAAGCGTGCTTGGGGCCAATGGTGCAGGGCTT # Right flank : CAAAAAGAAAATCGCCGCACGCCAGTATCGAAGCCATCACACTTCCCGTCCCCGATTCGGCTAGGATTCATCTCAACGGACAAAGGCGACGGGGCGCACGTGGATTCGATCAAGGCATCGGAACTCAAAACCATCCTGCATTCGAAGCGCGCGAATCTCTATTACCTCGAACATTGCCGGGTACTCGTGAATGGCGGCCGCGTCGAGTATGTGACGGATGCCGGCAAGAAAAGCCTTTACTGGAATATCCCGATCGCGAACACCACCAGCATCCTGCTGGGAACCGGTACCTCGATCACGCAGGCGGCGATGCGCGAACTGGCCAAGGCGGGCGTGCTGGTCGGCTTCTGCGGAGGCGGTGGCACGCCGCTGTTCAGCGCGAACGAAGTCGATATCGAAGTGGCGTGGATGTCGCCGCAAAGCGAATACCGGCCCACCGAATATCTTCAGGCATGGGTGCGATTCTGGTTCGACCAGGCGTGGCGGCTGCATGCCGCGAA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGGGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCTGCCGGATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1512-2019 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQOM01000975.1 Burkholderia glumae 3252-8 975, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1512 28 100.0 32 ............................ ATGCGCGGTATGCGGCAAGTCAAGTGCGCCGG 1572 28 100.0 32 ............................ CCTGCTCGTATGCCTTAAACGACAACGTAGAC 1632 28 100.0 32 ............................ TAGCCGCCGATGGCAGCGGTGCGCTCGGCAAT 1692 28 100.0 32 ............................ TTCACGAAGCCAGGCGACACGGTGCTCGACCC 1752 28 100.0 32 ............................ TGAGAACGGCATGACGCCCCTGGTTGCGCAGT 1812 28 100.0 32 ............................ GCGCGCCGCGTCATCATGCGCCGCGACGGCGA 1872 28 100.0 32 ............................ ACTGAGCGACGGGATCATGCGCTTCCACTGCC 1932 28 100.0 32 ............................ TTGAGGCTCAGCGCCAATCGGCCGTCGTCGCC 1992 28 92.9 0 ..........................GG | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTTTGCTGCCGGGTAGGCAGCTTAGAAA # Left flank : TTCCGAGGCGGTTTTCACCAGCGTGCGGAACGCCGCCGCGTCGAGCGGCTTCGGATTCTTCTTGTCGCGCCCCATCGTCCAGGGGCCGACCAGCGCCGGCTCTGCCTCGCCGTCCTTGATCATCGCGACGGCCCAGCCGTCGTCGTCCTCGTTCTTGATCACGCGCGCGGTCCAGCCGCTGTCGTGCCAGAGGCCGTCCTCGTGGATCGGGCTGTCGTCCTGGGCTGGGTCGGTATCGGTGGCGTGGTCGGTCATGAGGCGTCGGGCGCGGGTTCGGGGGCTTGGGTGGGCGGCTATTGTAAACGTTTCGATCGGCGGCAATGGTGCGCGCCGCCGCAGCTGGCCGTGCGGCCGGGTGGTGGCTGCTGAACCCTTTTTTCGGCAGAATGCGCGAGGGGCTGCAAAATCAATGGGTTAGCGAGAGGCGGGAAATTTGGGGTGTGCGAGGTGTCGGGCGGGAATTGGTTTTTGAATCAAGGGGGTAGGTGGGTTTTTGTTCA # Right flank : CCAGTTCAAAAACCCTGCTCAGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGGGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCTGCCGGATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //