Array 1 16200-15800 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRE010000004.1 Tolypothrix sp. FACHB-123 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 16199 38 94.7 36 .C.....T.............................. TCCCTCATCAAAGTAGATAAATTTGGACAACTCATC 16125 38 100.0 32 ...................................... GCTTTAAGCCAGCCAAAGTTAATAAAAAAGGC 16055 38 100.0 33 ...................................... AAAGAAAGCTACTGATATTTATGATTTTCAAGC 15984 38 100.0 34 ...................................... TTGAGAAAAAAGGTGGGGGTAGCTAGCAGCGTAC 15912 38 97.4 37 ....................................G. AGGAGGAGCGAATAAACCAAAATCTGCGTTTACTACC 15837 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ===================================== ================== 6 38 98.7 35 TTTCAACCCGCCTCAAGCTGTGAGGGGTATTGAAACTT # Left flank : GCTCAGTGGATAGAGCAACAGATTCCGGTTCTGTGGGTCGGGGGTTCAAATCCCTCCGCGCTCGTTTTTTGTACATTAACTAATTATTTGTCACTGTTAACAGATTAATGTCATTTTTAACAAATTGATGTCACTGTTAACAGATTAATGTCACAGGGTTATACTGCTATATCTAAAGTATGGCAGCAATATGCTTTTGCAGAGCAATTAATCACCGATAAGATTAGTCAATAGTAGAGACACAGGTAAGTCCCTCCAAATCAAGAATCTGTTGCTCTATCCTTTCAACCCACCTAAAAAGTGTTTTTTTGTTGGTTTCAAATAGTATTGATGGAATCCTAAAATCTTCTTTCTATCCCAAATTTTTATTGGCTCTATCAACAAGGTTGGATGAAATTGAAAAATTGCCTGTGTCTTGTTGTAATATCTTCTGCCAACCGTACCTTTAAGCAAAGTATTGAAAATCTAGACGAACATCCCAAAAACGCTATACGCACAGA # Right flank : CAGCGCCTCAAATCCTTCACTAGCAACGACTTCCAAAAGCATTTTGTCAGATCTGCCAAAGTTGCCTGTCACTTAACACTTAAAAAAGTAAATTACTTGACACCATAAAAGCTACAAGCCTTAATCAATAGGCGCTTTGAAGTTTTGGCAGATCTCCAGGGAAATTGACCCCGCTTCGATGCGTCAAAAAAATAATTAAGGTGGGTTCCTCCTTGATCGGAGGTGATTCAGTAGCCACCACTGCGGTAAACCCGCACCTCTATTACTGGGGGCGCACCTTATCCTATCCGTAAAGGATAGCAGCATCAAGGTGGGCAGCTACCAGGGTCAGAAAGCAAGACTGTTTGGCAGCAGTCAAACTAACCCGCATTTACACAGTACAGCGGCTTTATACAAGCATGAACTGCGGCGCTATTTATTAATACTTATTCTATTTTCAAGGTTCAGTGTTTTGTCAATCAGGTTTTTTGGCGGGAATGGTAAGCTGCGATCGCTAATTC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCAACCCGCCTCAAGCTGTGAGGGGTATTGAAACTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.28%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 1 68101-67775 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRE010000005.1 Tolypothrix sp. FACHB-123 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 68100 37 100.0 35 ..................................... ACAATTTACGATTTTGCAAAGATTTTGAGTGAAAA 68028 37 100.0 37 ..................................... CTCCAAGAACACATCGCTAAATATATCCAGCGCCAAG 67954 37 100.0 34 ..................................... CATCACTTGAAATATAAGCGATCGCTATTGCGGA 67883 37 97.3 35 ..................C.................. TTTGGGAGTTGCAGCGTATTTCTTAGGTAGTTCTT 67811 37 83.8 0 ..............T.................ATCGT | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 96.2 36 GTAGCAACAACCCTCCCGGAACTGGGTGGGTTGAAAG # Left flank : AGCAAGTTTACCTCTAACAATTACCCTACCCTTTGTCAGCGTCACCTCTTCCCGAATCTGAGTGTTGATATCCCATCCCCGACTAGTCAAAGCAGGTGTAATATATTTCGTACAGATATCACGTTCACTCAAAGATTTCTTGTCAATTGCTTCTGACATAAAGAAGTTCGGCTTTCGGTTAACAGCAGGCGCAGTATAATTCTAGACTTAATTCTTGCTTGCTGTTAAGTATGAGTCTAGGATTTTGCTATCTAGGAACCAGAAAACCTATTATTATTCAACATCAAACTAGCTACTAAGCTTTGGCAAACCTCAAAATCTTAAACGACATTTAATTTGTGAACAGTTGTAAAAAGTAGGTAACGACATCAATTTGTGAAACAACGACACTAAAGTATGAAAAACGACATGAATTTGTAAACGACGACAGATAATTAGTCACTGTACAACTGGGTGGGTTGAAAGGGCTATGCCTCGCTGATTGGAAGCAAGGATAATTT # Right flank : GGAAATGTTTTTACAGTAATAGTCAGAACTACTTGTGGTTTTAAATTTTAAAAGTCCTATAGCGTTTCCCAGGCTACTGAAGTACACACGAACCTTTTATATCAAAACAAGTAGCTTTAAAAATGTACCTCACTAGATTGAGAAACGCTATAACAAGAATTAGAGGGTTGAAAGAAGCTCCTCACACTACATTCAAAGCTATTTTTTTGTAAATGAGCTTTTTAGGGTAAATGAGGTTATATTAGCGTTGTAGTTGTAGACTACTAAGTAAAATTGGTTTTGGTGGATGACACGAATTTGTCATTGCTACTCTCAAAATACAAATTTCACCTTAAACGACAACAATTTGTCATAACGACACTAATGTGTCACCGACGACAAATAATTAGTCACTGTACAAAAAATCAAAAAAAAGACCGTGAAACATTATGTTTCACGGCTTTTCTTGTGGTGTGAGGAGCTTAACTAAATATCATGATAAGGTAGCTGAACAATGACAA # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAACAACCCTCCCGGAACTGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.80,-12.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 2 121589-121840 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRE010000005.1 Tolypothrix sp. FACHB-123 contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 121589 37 100.0 35 ..................................... ATCCCGGAAGGACAAGCCAAGGGGATGGATGATTA 121661 37 100.0 36 ..................................... GAAGTAAAGCAAAAGCCTGTTTCAGCAATTCGCTCT 121734 37 100.0 33 ..................................... TTTGGGCTTCATCCTCTGCGATTAATCTAAATG 121804 37 97.3 0 ..................A.................. | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 99.3 35 CTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : TTAAAGCTGTAGCTCTTGCAGGTTTAACAGAAGCTCTTGCAGCTTGCGCAAAACACGGAAATGTCAAAGCTGTAGCTCTTGCAGGGTTGACGGAAGCTCTTGCAGCTTGCGCAAAACACGGAAATGTTAAAGCTGTAGCTCTTGCAGGGTTGACGGAAGCTACTACAGCTTTGGCAAAAGTAGATACAGTGGAAGAATCAGAAAATTAATTATGAGTTGAGAGAATTTAGTATTGCCCACTCCGGGGTCAAATCCTACGGTTTGCTAGATAGAATGCGCGGATGGGTAGGTGTTGAAAACGGGATTTTCATAAAAGCGGCTGAAACTCTTTGTCTGTAATACTTGCAAGTTTTATTGCTGTTTTATCGTCCGCGCTTCCTACGCAGGATAACTTTCAGCGATTTTGGTTTTGCTTTTTGACTATTGCTTGTGTTATTATTGACCTGTCCGCGCAACAGAACCTTGAAAACCTGATATTAATTAGCTTTCAGGCTTCCGCA # Right flank : CGATTTATTTGAGAACTTAATGTGAAACCACGCTAAGCTCATAGCCCACCTCCGAATGAATTCGGAGTCTAATAGCAAAAGTAGCTAAAGCTAACTAAAAATTATTATTTATCCCCAGTTTACTTTAGTAGGGGCGGGTTCACAGATATGCTCCAATAATTCACGACTATCTCGCTTAACCCGCCCCTACAATTTAGGATAATTTATTGTTTGTATTTACCTGAAGAATGGACAATTTTCTGAGTTAAAACAAATGTTGAGAACAGAATTAAGGCTCAAATGTGACAGGGAAAGTCACTGTAAAAGTAGTACCTTTACCAAAGCTGCTGTCAACTTGTATTTGACCTTGGTGATGTTCGACAATAGCTTGAGCGATCGCTAATCCTAACCCCGAACCTGTAGAAATGTCGCAAGCTGTGTTTTCGGTGATGTGGGTACGTGCTGGATCTACGCGATAAAAGCGATCAAATAATCTTGGTAATGCTTCTGGGGGAATCCCA # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 62099-60905 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRE010000011.1 Tolypothrix sp. FACHB-123 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 62098 37 100.0 34 ..................................... GCGGCTCAAACCCAGATTTAGCAACAGAGCTAAC 62027 37 100.0 35 ..................................... ACTATGTTGACCGTAGCCACTGGTTTGAGTTAGGC 61955 37 100.0 40 ..................................... ACACTTTCCAGCACAACTCAAAGCTTGCTGGAGATTTGAA 61878 37 100.0 34 ..................................... TTAGAACGCAGCTATATTATTACTACTCAATCAG 61807 37 100.0 35 ..................................... CCGACAACATGAGTAACAGGCTTTCTGCCTCTGAT 61735 37 100.0 33 ..................................... TTGCGGTGAGTGATTTCTATTACCCTTCTTTAT 61665 37 100.0 36 ..................................... AATCAAACAAAGCGGCGATTATGACGAGTTGAGCAA 61592 37 100.0 37 ..................................... AGGAATCCTGATTGTAACCCTCAGCTTTTAAGACCAT 61518 37 100.0 34 ..................................... TCTAATATACGGGTAAAAGATTTAAAAAAGCAAT 61447 37 100.0 36 ..................................... TTTGTAGACTACAATTTCTAAAAATTACAAAAACGC 61374 37 100.0 33 ..................................... TAGTAGCTTTCAAAATCTTCAGCAAGTCAGTAT 61304 37 100.0 35 ..................................... GGAAAATTTTTCAAGGTTTAAGCGAAATGCGCAGC 61232 37 100.0 35 ..................................... AAGTGGGGCTGTCTCCAGTTCGAGAGAATGCAGCC 61160 37 100.0 37 ..................................... CCCAGAAACCCAAAGCGTGATGTAAAAATCACTAAGA 61086 37 100.0 37 ..................................... ATGGTGAAGTATTCGCGCCTGGTGCTACTTGTAGGTC 61012 37 100.0 34 ..................................... CTTGAGAAAACCCCTTGGAATACAACCTGGACAA 60941 37 73.0 0 .........................TATCC.CACTC. | ========== ====== ====== ====== ===================================== ======================================== ================== 17 37 98.4 35 ATTGCAATTACCCTTAATCCCTATTAGGGATTGAAAC # Left flank : TGGCAATTGTAGTATCAAAAGCAGCAATTGTATTATCGAAAATGGCAATTGTAGTATCAAAAGCAGCAATTGTATTATCGAAAATGGCAATTGTAGTATCAAAAGCAGCAAATGCGATCGCATAATCAATAACCACAATTGAAATTTGTGCTTAGGTTTGAGAAAATGGGGATAATCAGCAAGCCTGACCACAAAAAACCAAGCTCACGATGATATGGCCTGGAACAAGAATTAAATCATCTGAAGCGATCGCATAATTCCTTTTACAAAATTTGCGCGACTGGGTAGGTGTTGCAAAAACAGTTTCCACAAAAATGACCGAAATTCTTTTTGTGTAAGACTTTCAAGTGTTAATTGCTATTTCGTCAGCCGCGCGGCTTACACAGTATGGCTTTGAGAATTTTTGGCTTTGCTTTTTTACTCTGGTGTATGTTATGATTCACCTATCCGCGCAACAGAACCTTGAAAACCTCATATCACTTAGCTTTTAGGCTTCCGCG # Right flank : CAACCCCTCACTTACCCAATAAACCGCCGTCACCCTGGAAGGGTGCGGCTAATTGAACAAAGCCCACCTTTGTGGACTAAGAAAATTTAGCCCACAAAGGTGGGCTTTGTAGCGTGAGCCAGTGGCTTTGAGCCTGCGGGCGTTATTTCGGGTATGCGAGAGATTTTTTTATCCATCAACCATCAACCGTCAACCGTCAACCGTCAACCGTCAACCGTCAACCGTCAACCGTCAACCGTCAACCGTCAACCATCAACCATCAACCATCAACAGTCAACCGTCAACCATCAACCATCAACCATCAACCATCAACCGCCCATCCAAAAACTTAAGCTGCTGATATAAACAGTTAATCTGCGGTAAATATACACCCGCAGCTTGAGCTTTGCGTAATGGAGTACCAAAAATTGCTTCTACTTCTAAAGGACGCCCTTCATCAGCGTCAATTTTCATGCTGGTACGATAAGGCTTCATCTTCACAGTATAATCGAGCATCAATT # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTACCCTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 24777-22607 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRE010000060.1 Tolypothrix sp. FACHB-123 contig60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 24776 36 100.0 37 .................................... GAATCAGTTCCCTTTCATCGTGGGTGTATCTGCTCTT 24703 36 100.0 39 .................................... GCTTTCACAGCGGCAGGTTGCCCCGCCGGTTTCTATTGT 24628 36 100.0 36 .................................... TATGGGAAAAACCGCCTTGGATAGCGTTCTGATCTC 24556 36 100.0 38 .................................... GAAAGACGAGCAACAGCAACCAAGTTAACGTTAGCCAT 24482 36 100.0 46 .................................... CTAATGCACTTCCAGAGAAACCTCCTCATGGAAAAAAAAAAAAAAA 24400 36 100.0 40 .................................... GATACCGATTGCCATCACAGCAGCAGTGTTTTTCAAAGAA 24324 36 100.0 36 .................................... CAACTCCTGAAGAGGATTTGGAAGCGCTAGTAAAAG 24252 36 100.0 40 .................................... AAATTGGTCGGCTTTGGAGTTTCCACTTTCAGCTGCTTGC 24176 36 100.0 37 .................................... CATTTTGAATGCAACATGTATCTCTCTATTGCTGGAG 24103 36 100.0 36 .................................... GATCCAGTACCTTCCGACTGTCTTGGTTGTACAAAT 24031 36 100.0 40 .................................... GATCATCGTGTTTATCAACGATCTTCCACTCCGCCATTAC 23955 36 100.0 33 .................................... CCTCCAAGTTGCCAAAATTGTTATATTTGTAAC 23886 36 100.0 43 .................................... AAACTTGAAGTGGTTGTTGGGTTAACTCTAATATCAGGATTGA 23807 36 100.0 33 .................................... GCTATCTCTCCTAGTTAAACATTCCGTTGCAGT 23738 36 100.0 38 .................................... TTTTTTTCCTCTGATTTGATATTCTGAAAAAAATAAAA 23664 36 100.0 38 .................................... AGAAACCACAACTGCTTCAACAGAAGTATTACCATCAA 23590 36 100.0 40 .................................... CGGATTGGGGCCGAACCCGGTGTAGGTGAGTCGGAAAAAA 23514 36 100.0 32 .................................... TAAGTCGTCTGGATTCAGGTCGGCTCCGCACA 23446 36 100.0 35 .................................... CAATGTCGTATAGCAATACGACGATGGGTGCGCGT 23375 36 100.0 38 .................................... TTTCGTTGCTGTTGCTCGTTTGAGCGCTGACCACGTCC 23301 36 100.0 36 .................................... GAAATTAATCGGTAGTGAAGTCGACTGCTTGAGATG 23229 36 100.0 38 .................................... CCAGTATCTCCAATGTAAGCGCGGCATCTTGCATTCCC 23155 36 100.0 36 .................................... GAGGGGAAACGGAACGGATTTGCTCAATCACTTCGC 23083 36 100.0 39 .................................... TAAAGTGCTGTCAGCCGCTGTTTTTTTTACATAAAGAGA 23008 36 100.0 38 .................................... ACTTGGTCGAATACATAGGAACGTGTGTACCATTTTCC 22934 36 100.0 40 .................................... GTTGTCTGCCCTGGATGGAACAGAACAAGCGAATTCCCAA 22858 36 100.0 38 .................................... GCTGTGCTACATGGAGCTTTTGTTGTTGCAGGATTTTG 22784 36 100.0 36 .................................... TTGTAATTCTTGCTGTTGAGATGATTTTCCACATCG 22712 36 100.0 34 .................................... GATGTATGGTTGGTGGCAAAGGCTGCAATGTAGA 22642 36 86.1 0 ......G...G...TA...............A.... | ========== ====== ====== ====== ==================================== ============================================== ================== 30 36 99.5 38 CTTTACAATCACATCGCCCCGAAAGGGGATGGAAAC # Left flank : ACCAACGATCGCAATTTTTGCTTGTTCACTCAAAATTGCGCGATCGCATCCCCTATTAACACCCTGTTGCTTAAGCCACTTACGGTAAGCTACAGAATAGCGATCGCACTTTGTTCACCCATCTCATAACAGCAGGCGATCGCACTTCCAACTGACTCAAAAAATGCGTAGACGTAGCCCGCACTTCGGCAAGCTCAGTGACCATCGTAGACAGCGCTCAAATTTACCTAGTTATTTGTAACAAATGTGTAATAAATTTGACTAAAAAAAGACTGGAAAGCTATATTTAGAAATAGCGTGAGTCGCTTATCGACACCACTCGCCCGAACCTTGAAAACCTCATAACTTCGTTGACTGGTGTCGATTGCTTACACAGCAAGGTTTCCAGGCTGTAAAATTTATCGCTTATTGAGATTTTCTAGGAGTTATTGACACTATAAAAAGTGGTGTCGATTAGGGGGTCTAAAACCCGCTCCTAGTAAGGCTTTCAGAAGTGAACT # Right flank : TTAGATTAAATCTTTTGGAGAACGCCAAAAAATAAATTATCGCAAATTGTAGGGGCGGGGTGACCGCCATTGGTGTCAACTTAACGCGAAACCCATAGCCCGCCTCAGAATGAATTCTGAGTCTAAGAGGAAAAGTAAGCTAAAGCTAACTAAAAATTATCATTTATCCCCAGTTTACTTTAGTAGGGGCGGGTTCACAGATATGCTCCAATAATTCACGACTATCTCGCTTAACCCGCCCCTACGAGTTACGAGCTTGGTAAGTTAATGATGGGGACGTTTTTTATTTGGAAGTCCCTAATTGTAGCGACTGATTAACAACCAAGCGATCGCTTAAATTTAAAAATTTTAATAGTCAATTCTTAGGCGTACAGCAAGGAACAATCGGCGCAGAAGTTGAGTTTTCTAAATTAGCTTGTTTAAGTAACTCATTCCAAGCTGATGTAATTTCCGAATTTTTTTGTTTATTCTTTTGAATTTCTTCGCCTAAGGTTGTTAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAATCACATCGCCCCGAAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 201589-202558 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRE010000007.1 Tolypothrix sp. FACHB-123 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 201589 37 100.0 36 ..................................... ACGCTCTCTACTCTTAGATTGAGAGTTATCACTTGA 201662 37 100.0 35 ..................................... AAAAAATGCTCCTTTATGATAGATGGCTTCTTTCC 201734 37 100.0 37 ..................................... GGAACTATAAGAGCGCTAACCCCGGAATACTCTATAA 201808 37 100.0 32 ..................................... AAATCCAAGGCGGTGAAAGATGCCATCAGCAT 201877 37 100.0 31 ..................................... ATTGCAGCGCGATCGCCTCTCAATGCGTATG 201945 37 100.0 35 ..................................... TTTCTTGAATCTCAGGCAACAATTGCATGAATGGG 202017 37 100.0 34 ..................................... AGGTTCATCATCAAGCATTGCTCGAAATTTACCA 202088 37 100.0 34 ..................................... GATTTTATGACCACATTTTATGCAATTAAAAGCT 202159 37 100.0 35 ..................................... TCATTAGATGAGATGCTAATGGAGCCAACTTCACA 202231 37 100.0 39 ..................................... CCGATAGGCTTAGATAGCCATCATCAGCAGCGCGTTTGG 202307 37 100.0 35 ..................................... CTTTGTCTTTCAAGTCTGCTGTTTATATTAATAAT 202379 37 100.0 35 ..................................... TAGGACAAAGATGTTTGACCGATGCTGGCACCAAT 202451 37 100.0 34 ..................................... AGAATGGGGGCATTGCTTCATATTCATCTTCGGC 202522 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 14 37 100.0 35 ATTGCAATTTCACCTAATCCCTATTAGGGATTGAAAC # Left flank : TTGCAATTAATAGCGGTAAAGCCGTTGTTGGCGATGTTGGTAGCTCCCAACGGGTTGAATATACAGCCTTAGGCGGTACAATTAACCTAGCTGCACGTATGGAAGCAGTTTGTCCTCCTGGTGAATGCGTAATTAGTGAAGTCACTTTCAAAATGCTTTCCGAACCTTCAGATTTTCAAGAAATGGGAAGCTATAGTTTTAAAGGCATTAATCGGTTGATCAAAGTTTATCAAACCACAATGCATCAATAAATTAGGCAGCGATATGAGAGAAGGCGCGGATGGGTAGGTGTAGAAAAGGCAGTTTCTACAAAAATTGGTGAAACTATTTCTGTGTAAGACTTACAAGAATTTATAGATATATAAGTACCCGCGCGTCTTACAGGGTTTAGCTTTCAGCCATTTTGGGTTTGCCGTTTCACTATTTGCCATGTTATGATTTATCCATTCGCGCACCTGAACCTTGAAAACTCCATATACCTTGGCTTTGCGGCTGCTGCT # Right flank : CTACCAAGATCACAAATGGAATACGCCCGCCCCATTATTGCAATTTCATACCAGTTTAAATAATGTTGGCGAAACATTAATATATTCTAGAGGGCATGGCGGTGCCAATGCCCCTACAATTTGTCGCGTTATTTTTCCAGAATCCTAGCCGTAGCCAGATAAATTAGGACATAAATCTGAGATAAAATCCTGACAATAAAAGTCTTTCAAGTCAATCAACAATCAACAGCACCCCACTAAAGCTCACTCGAAATGTCAACAGCCAAAACCGATATTTTTCGCAACTGAAATAGGATTGCTATAGGAATGAATGGATTAACCTAAATTAGGATTTTCGCAGGAAATATTATTTGGGGAATAAGGCTCAAATTTACCAGTTTCGCGGTTAATTTTCCACGCTTGCTTGATATCCCTTAACCATTCTTCTTTTGACAAAACTGCGATCGCCACAACATCAGGGTTTGATAACCCATTTTTGATTCTGCAACGTCCACCCCAGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCACCTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 24042-24658 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRE010000090.1 Tolypothrix sp. FACHB-123 contig90, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================= ================== 24042 34 88.2 36 T.....A.........G...T............. CACGCTAGAGTTGTTAGCCTAGCGGAAACAATTTCG 24112 34 91.2 40 ....A.A.......A................... GTGTTTACCAGCATTACTTCCATCTGGCTCTTGACAAAGA 24186 34 100.0 38 .................................. CTATGGCTGGCATTACAGCCTGGTCAAAGACTAGGTCG 24258 34 100.0 40 .................................. CCGCTGGATTAATCCCTGCTTATCAGGGGCTTCTTGGAAG 24332 34 100.0 39 .................................. CTTTCTTCTTAAAATAAGCAGAGATGATCGTTCTTAAAA 24405 34 100.0 41 .................................. CTACTTTTTTCTACGTGATCTATTGATAGAACACATTCCAA 24480 34 100.0 39 .................................. CTACAGCAGTTAGTGGTTTGTTCGGAGCCGCTACTATTG 24553 34 100.0 38 .................................. CTGAAAAGTTTTTGACAGTTGCATTGGCAATCTTGCTG 24625 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ========================================= ================== 9 34 97.7 39 GTTTCCGTCCCCGTGAAGGGGAATTAATTGAAAA # Left flank : CTACATACTCACCAACGTCAAACCCCTGACTCTCCATCTTCCTTCGTGCCCTTTGCGTCTTTGCGGTTTTTCTTCTCAATTTATAACTTCTGGCGGCAAATTAAACAAACCGTCTTCCCCAGATTCCCAGTCAACAACCTGAAACACAGCATCAATATTTAGCTCACCATAAATATGGGGAAATAACTCGCCTACTTCCGCCTCCTCATAACGAATTTTAGATGTAACTTTATCAGTATCAATAAATAGTAATAGCAATTTCTTTTGATTGCGAAAAAATCTATTTGCTACTTTAACTAATTGCTGAGATTCCGAACAATGGATAAAACCCTCACTATCCAATGAATCAGCGCGATAGCTACCGAGGATTTTTGCTTGTTGCCATTGTTGTGCTGAGGTAATGTGAAAGATAGTTTTCATGAAATTGCAGCGCTGCTAACTACTCTCATTGAATATATTCCAGCACTGCCACAAAATGCGCTCTGCTAGCTAGGTTTAAT # Right flank : ACCCTACCCTTTTAGAAGCCTTATCCAGAGAGGATTACAGATACCCATTTTCGCGGGGGGTGTAACTTAACTGTCAATAAGCTCAAATTATTGATAATTGAAGGCTAGTAGACCATGCTCAAAAGGTTACTGTGTAAGCTTTTCGCGGGGGTCAACGAAAGAATCAGGGTTTTGGATATTGCTCTACCCCCGCTAAAAATTTACGTATGTTTAGCCAAAACAAATACTTTTGCTTTCACTTGGAAACGTCATATTAAGTTTTCAAGGTTCTGTGAAATTATTTGAGAGTATAACAGAGTACGCTGGAAGTTTCACTCTGGAGACTACAAACGTAACATAACATCAAAATATTCTAGAGGGCATGGCAGTGCCAGTGCCCCTACAATATGTCGCATTCTTTTTTCCAATTGGTATTAAACTGCGAATTGCTTTCTGATCACGGGAATTGTTTTCTGATCACGCAAATTGCTTTCTGATCACGGGAATTGTTTTCTCAAACT # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCGTGAAGGGGAATTAATTGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA // Array 1 8912-9390 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRE010000098.1 Tolypothrix sp. FACHB-123 contig98, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 8912 36 100.0 42 .................................... TGAATCATCTAAAGAAACAATTCTAGCTCCACGAAGCCAGAA 8990 36 100.0 37 .................................... CCAACAGTAGCAACGCGGATAGCAGAACCCAAGTTAA 9063 36 100.0 33 .................................... TAGAATGGTACACCCCACATAACCAAACTCAGC 9132 36 100.0 41 .................................... GTCAATAAATCGAAGCCAATTTTTCCTGCAACAGCGGTTGT 9209 36 100.0 38 .................................... TTTGATAACTTCATCCCGGGGAGGGAATGATAGCCTGA 9283 36 100.0 36 .................................... GGCAAGCACTGCTGCAGTGAACCGCCCCGCGTTTGA 9355 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 7 36 100.0 38 CTTTACCGATTGCTCTAAATCGGAATTAATGGAAAC # Left flank : CAAAGCGATGCTCGTAGATTATAGTATTAGCGCAAAATAGCGTTTGTCTAGATAAAGTCCATTATTTTGACTAGCCTGATTGTTGCTTTTAATACTTCTCGGTTTTATCAGGCTAGTAAGCAAAAAGTAAGCAAAAATTTCTACGTAGTGCTGGAATCGAGTACTAGAAGTCATTTCCAGAGCTATTACCTCGCAACATTATTGCTCGGTCGCACATAGGTATCATCTCTTTTCCGTACTACTATTAATTTATTTATTAAATTGTTGACAGCTTTAAGTAACACATTTTACTCTGTTGCCTAAGTGTGTTGTATTCCATCTACACACCTCACTAGAACCTTGAAAACCGTATAACTTCGTTAACCTGTGTCGATGCCTTGTCCAGTAACGCTTTCAGGCTACAAAATTGACCTTTTTTTGAAAAATATTTTGTGTTTTTCAGAGGTGTGTCGATTGTGGTATCTGAAACGCTTATGCTGTAAGGCTTCTAGAAGTGAACT # Right flank : CATTGGTATCACTGGTATTGCTTTAATTTCTACTTCTAATTTGTCGCTTCCCTAATAAGAAGTGCAATTAATGGATTACAAATAAAAAGACCCTATCAGCCTTAAGTCGTTGGTAGGGTTTTTTATGACTTGATTAGATTCAATTGCTATAAATGACTCAATCCAGTTAAATTGATATCAGCCGGATTTATCAACACATGGTATTGAGCATTGATGATATCAGCGCAACAATATTTCTCGATCCAATCAGCAATAACTGATATCGCCATACCGCCACCAGTAGTAAACACAGGTGATCCATTCAAAAGTGCCTGACTGACCTTAGTTAGCAATGACTCTACAATCGGCATCTCAGAAACCCACTCGCTAAGGGCATCCTGAACAATATCACCTATCTCTACGGTTTCTGTACCATGTCTATACTTCACAGAATGCTTACCGTCTATCAATTTAGAATTTCTGAGCGCACTTTCTAGATTATCTTTCTTGAATTGAATACC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTGCTCTAAATCGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 7677-7063 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRE010000116.1 Tolypothrix sp. FACHB-123 contig116, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 7676 36 100.0 36 .................................... TTCATTATCTTCAGTTTTCAATATTTTAATATCACG 7604 36 100.0 38 .................................... TATTACCGTTACTAGCTAAGTAATACATATGTCCCAGC 7530 36 100.0 38 .................................... AGTCAAATCTCTAATGACTCTTGGGTGATCGGCAGATA 7456 36 100.0 37 .................................... TATTCCCAGGTAAAATGGTAGCAGGAATGATGGGAAC 7383 36 100.0 33 .................................... TTAATGAACCATCAGCAGCGTAAAAATCGCTGC 7314 36 100.0 37 .................................... GAAAGTGCGCCGTCACCAACAGTTAGTTTGTTAGTTC 7241 36 100.0 38 .................................... TCATTTGTTGTAACCATTGGGTCAACTTTTTCAGCTGC 7167 36 100.0 33 .................................... TAGGACTGCAATCCGACCCAGCTCCGCCATTTG 7098 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 9 36 100.0 36 CCCCACCGATTGGGTTAATTCGGAATAATTGGAAAC # Left flank : CGGTTTTAGCTGCCTGTTGAGTCTTGAGTCGGGAAGTTGGCATATAAGGTATAATTTTATAGTGATTTTCTTGTATTTGTGATATCCGAATATTAAATTTATATTTATTTGGATATGCTATGCGATGCCTTTGGCAACCACTTCGTGGTATCGCGTTAAATATTCACGGTATGTGTTTCATCTTAGTTGGGTACAAATGATAATTCTACGTTGCTCGTGCGAATAACCAATCAGAATATTATGTCTAACCAAGTCTGGTATCAAAGCCTTACTGTATCTAGGCTTGAGGCTAGTTTAGGAGGTTTTTGTAACATGACTATCTACACACCTCGGCAAATCGCCAAAACCCTTATTCTTTCGTTGAGGTGTGTCGATTGCTTACTGTGTAAGGGTTTGAGCTATGTGTTTGATTAATTTTACGGCTGGTTTTACAATGTTTTTTAGAGGTGTGTCGATTTGCGGTCTGAAATCCTTACTGGGTAAGGGCTGCTAGACGAACT # Right flank : AAAAAAGCCCTCATTAATATGAGGGCTTGTTATTTTTTTAATAGCTATTAATTGACAATGATAGCTGGCTTAAAAAGCGATTGCACTTTTCAAAATACGAATTACTATAGCCATCCTATTACAGTTGTGACAAATATCGGTTTTGGCTATTGACTATTGACTGCGCCGCACTGAAGCTCACGCGAAGTGTTGACTGTCAACGGTTAACAGTCAACAACCCTGTATGTAATATTTCATAAATCCGCTCTTCGGATTGCTAGATTTTTCGTCATTCGCATGAGAGAAGGTTGCAATTGGGGTCATATCTGCAACACTTGGTACTATAAGCGTTTGGTTGAAAATTAATAAGTAAGAGAAGAACCAGCTACTTTGACTGGCTGACTTTTTATGGTTACGAATTGTTACATAGATAAAGATAATCAGTAGTTTTGGGTAACAGCGAAGTTGCTCATTATACGATTTTTTTGGTGTTAGAGATTGTAGTTCAAGTTATTTACACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCACCGATTGGGTTAATTCGGAATAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 99470-99722 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRE010000013.1 Tolypothrix sp. FACHB-123 contig13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 99470 37 91.9 35 GC.................G................. TCTAGAGCATCTATCTGCTCATAGCTGAGGTCTAG 99542 37 100.0 35 ..................................... GGCAATTTTTCGGTGATAGACGGGAATAATGTTTA 99614 37 100.0 35 ..................................... TACATAATTAATCAATATTCTTATCCCGGTGCATT 99686 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 4 37 98.0 35 CTTTCAACCCGCCTCAAGCTGTGAGGGGTATTGAAAC # Left flank : ACATGAAGTCATCAGCCTACCATCAGAGCGCGAAAAATCTGCCTCTTAAATTCAACTTTGGCAAATTATGCTATAATAGCACCTAGCTTTATCTTAATGGCTAGCTGCTGTTTGCGGGTGTAATTCAGTGGTAGAATGTCACCTTCCCATGGTGAACGTCGTGGGTTCGAGTCCCATCGCCCGCTTTTGATTCAAATGTACATTAACTAATTATTTGTCACTGTTAACAGATTAATGTCATTTTTAACTAATTGATGTCACTGTTAACAAATTAATGTCCTCTTCAACAACTAACTTCCTTTTATTCTATGCTGAAACTGATGCGATCAACTCCAATGGTTGATTCAGCCTCTACAAGAATAAAAATTGGGAAGGTGACATTCCTTTCAACCCACCTCTTTAATTTGGTACTTACATAATAAAGTTTGTTTGTCGCAACTGGCTCTTTGTTGCAGAAGCATTTGAAACCATAGTTCGCTAGTGTGAAAAAATCTACCCAA # Right flank : CTCCAGCGCCTCAAATCCTTCACTAGCAACGACTCCAGAAGCATTTTTGTCAGAACTGCCAAAATCGCCTGTCACTTAACAATTGAAAAACTAAATTAACTGACACAATAAAAGCTACAAGCCTTAATCAATAAGCGATTTGAAGTTTTGGCAGATACCCAGGGAAATTGACCCCGCTTCGATTCGCCAAAAAATAATTAAGGTGGGTTCCTCCTTGGTCGGAGGTGATTCAGTAGCCACCACTGCGGTAAACCCGCACCTCTATTACTGGGGGCGCACCTTATTCCTATCCACAAGGGATAGCAGCATCAAGGTGGGCAGCTACCAGGGTCAGAAAGCAAGACTGTCTTCCAACAGTCAAACTAACCCACATTTTCACAGCACAGCGGCTTTATACAAGCATGAACTGCGGCGCTATTACTGATACTTATTCTATTTTCAAGGTTCGGTGTTTTGTCAATCAGCTTTTTTGGCGGGAATGGTAAGCTGCGATCGCTAAT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCGCCTCAAGCTGTGAGGGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 1 3826-3501 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRE010000132.1 Tolypothrix sp. FACHB-123 contig132, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 3825 37 100.0 36 ..................................... TTTAACCGCTTCGCCTGCCGATTTCATTCCCTTGGA 3752 37 100.0 34 ..................................... AGATGAAATAGAACATAACGATCCTGAATATCAG 3681 37 100.0 34 ..................................... AGAACTATATCATCACCGTTTGTTGGTGCGGGAC 3610 37 100.0 36 ..................................... TGTGAATCTTTTCAGCACTTGCAATAATTACAATTT 3537 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 100.0 35 GTCTCCACTAACCATGTGGAGGCGCATAATTGGAAAC # Left flank : GACGATCGCCGCAATCAACTATTACATAATCTCCGGGGAATGGAAGACGAAAGTGTAAAAGAATATTTACTAGGCTATGATAGCGATATTAGCGCCAGTAGTGTTGATGAAGCTTATGAAAAGCATGTTAAAGAGCCTTTTGTCTCAGCCTTAAAACTATTCAACTTATTACCCGAACACCCTACCAATTTAAAACAAAAGCTTAAAGATATAGCAAATTCTATTTCTTGAATTAATTTATTGTCTAAACTGCGCGAACCAGCAGATGTATTTATCGAAGGCTTGTTATATAACCGCTAAAGGCTTATCAGCTATAGATTTTGAGTATTTTAGGTAAAAATGAGGTTCGCGCCAACTCTGTAATCTATACCAGGAAAGTATTTGAGGTAATTTTGATGCAGGGAGGACTTGACAAGCGATCGCGCAAACTGTACTTTTTTACTCTATCCGCGCAAACTGGTCTTGAAAGTCTTGTATATCAAGCCTTCTAGACTCCAACT # Right flank : GTGCGATCGCCATAAGCCATTGTGGTATAGTCTCCAGTAACAACATGGAGACTTTTGCATAAAAAATCGTCAATCGCATCACAAATAGACGATTTTCTAATCTTCACCAACAATAATAAAAATAAATAATACTAAACCCAGCTTGTAAGATTGCGGACGACAGAGGGAATTTGCAATGCATTTACCCGAATTATTTCCCCACTTCTTCATTCTCCAGCGATTGGTGGATGGTTCGCTCAACCAGAGCCAAAACCTAATTACAGCAATGCGACGCTGGATTTTAATCAATTGGTTTTATGGAGAAGCCAGCAAAAATTTAGAGTGCGATCGCTATCATGGTATAACCTTTAATGAATGGAGCGAATATTTTTTTAATCAAGACCTATTGCAACTGCAAGCATCCTTTAAATCGGGACATCCACTCGGTCGTTTGTTGGAGAAAAATGACGAAATTTTCAAATCTCACCATCCCCTCTGCCCCTGTTATAAAACAACTGTAG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTAACCATGTGGAGGCGCATAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 17754-18306 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRE010000014.1 Tolypothrix sp. FACHB-123 contig14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 17754 37 100.0 36 ..................................... CATTAATATTATCTAATTCGATCCAACCTCTAAAAG 17827 37 100.0 36 ..................................... GGCTTGGTCTCCAGCGCAAATCATGGACAATCTGCG 17900 37 100.0 36 ..................................... GTAACTTAGAAGGGGGTCTTACCCCTTGTGCTAGTG 17973 37 100.0 36 ..................................... AACTCAGATAGCTAAAATCTGTGGTTATTCTAATGG 18046 37 100.0 37 ..................................... CCCTTTAAAAAGTGCACCTAATCAATTTACAGGCACA 18120 37 100.0 34 ..................................... CTAAATAACTCAACACGGCGATCGCTTTTCTCAA 18191 37 100.0 42 ..................................... AAAGGACGTTTGAGAAAAACTTTGGATTGTCATATCATTTCA 18270 37 94.6 0 ..................TT................. | ========== ====== ====== ====== ===================================== ========================================== ================== 8 37 99.3 37 GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : CATTTAGCGGGAAAATATTGGATATGACATTGATAACAAAAGCGCTGATAATGGCAGCTAAAGTTGCAAGCTGACGGATAAAATCACGGCTATCGCCTTGAGTTGACTGCTGCATGGGATAGATGGCTAACTCAATATATCTTTAGCTTATAGTTGTTCAGCTAGCGTGCGATGTGCGATCGCCTTTATCTTGCAGAACTCCTATATAATTTTGGGGTAGAGCCTTCAGCAATACAGTTCAACCCTGCCAAATCAACGATTTTCTTGCCAAAATGCGCGAAGGGGTAGGTGTAAAAAAACAAGTTTTTAGAAAAATCGGTGAAACTCTTTATCTGTCAGACTTTTAACCATTAATTGTTACCCAATCACCCGCGCACCTTACACAGACTGCGTTTCAGGCATTTTGGGTTTGCAGTTTCTCTATTGTGCATGTTATGATTACTCTATCCGCGCTACCGAACCTTGAAAACCGCATAATAGTTGACTTTGCAGCTTCCGCA # Right flank : CCTTTTCTACATGTTTTTGTGAATCTACTAAATTGAGTTGAAAAGATACAGTAGATGGCCAGTTAGTGAGGTACAGATAATCATTGATTGTAGGGGCACTGGCACTGCCATGCCCCAAAGCGCGTACCTTATTTACCTGAAATATACTGTAAATATGTGCCTAATTAGCCGACGAAGGTGAGCTTTGTATGTGTAGCCCCACCCTTACAAAAATCCACATATCACAATTTACTAATCTATTAAATACGCCAATAGGGACACAATATATTATTGCGCCCCTACGATTATTTATTCATCTAAATGCACCCTGAGAATGCAGATTACCTAATACCTATGCCACATTTAAAAAACCAGTCTGAATCAAATACGCAGTATAGGTCATAAACAATTCACCAGTAATTGGCGGACAAGAAATAGAACTACCCTCAAGCGCTTTTAAAGTCTCCTCACAGCTAATGTGGGGGCGCTTTGATTGCAAATACAAATCAGGAATTGTTAAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 2487-1496 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRE010000150.1 Tolypothrix sp. FACHB-123 contig150, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 2486 36 100.0 42 .................................... GACCCGAGCAAACTCGACCCGTCAGTTGAGCGGTGGCGTTTC 2408 36 100.0 38 .................................... ATTCGCTCGTGCTCGAGCTTCTTGATTTACTTCACTAA 2334 36 100.0 36 .................................... TAAACCATTTCCTCCATTCTGATCGTCTCTTCCTGC 2262 36 100.0 36 .................................... TTAATGGCTAAGCGCCGTTCAGTGCAAGACATTAAT 2190 36 100.0 38 .................................... TTTAGGGTTGCAGTTCCTCCAGCACCACCTTGACCTCC 2116 36 100.0 39 .................................... ATCAAACCAGCAGCGATGAAAGCAATCAAAGATTGGAAC 2041 36 100.0 39 .................................... GAACAGGGCGGGAATTTAAGCTTGCCATGGAATTTTTCT 1966 36 100.0 35 .................................... GCTTGCGGGCTTCTTCAACGGCTTCTGTCGGAAAC 1895 36 100.0 40 .................................... CCCATGCCACGATTGACGTTTGCAAATGCACCGTCAATTG 1819 36 100.0 35 .................................... CTTCTTTTGCTTATCTGTGCCTTCTTTTGCTTTGA 1748 36 100.0 36 .................................... GCTCGTTGTTGCTTGCGGATTTCGTCCGCTTTTTGC 1676 36 100.0 35 .................................... ACAACGGGGTGGGTTTTCCCAATTTACCTTCATAC 1605 36 100.0 36 .................................... GTACACTACGAGGGCAGGCTTGCGCCTGTCCGTTAC 1533 36 97.2 0 ...................................T | AA [1500] ========== ====== ====== ====== ==================================== ========================================== ================== 14 36 99.8 37 CCCCACCGATTGGGTTAATTCGGAATAATTGGAAAC # Left flank : ACTTTTACAAGTGGTGTCGATTTGCAGTCTGAAACCCTTACTGGGTAAGGGCTGCTAGACGAAC # Right flank : TACAATACCTGAAACTGCAATGATTATGATGAAAATGCAGTTTCAGGTATTTTTAATTATTAATAAAGATAAAAACAGCCCAAATGTGTAAAAAATATTTTGTCATTGCAGGCATAATGGAGCAAAGCGATCGCAACACCTTAAATTAATGGGTGTGTCACCAAACTCTTAGGCGATCGCCACCTTTGGAAACGCGAGTTTCCAAGCATAAGTTTTAATAAAACATATCGTCCAAACCCAAATAAACAGCAATTGGTGAAAACCTATGCTTACATCTCGTCGTGTCCTGATTTTTGCAGACAGCGATAACACTTACCTAGCAGCACAAAGCTTCAACAGAAAAATCGACTGGCAAAAAATATGTAACTATCTTGCAGATCCCAAAGAAGGTAGAGAATTAATCGAAATGGTGATTTATGTTGGTTTACCACCAGCCAGAGAAAGATTTGAAGAACAACGCAAAACCAAAGAGAAATTTGTATATTGGGCTAGAAATAACG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCACCGATTGGGTTAATTCGGAATAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 972-359 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRE010000152.1 Tolypothrix sp. FACHB-123 contig152, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 971 36 100.0 35 .................................... AACGTGACCGCCTCGCGGTAAAGGGCTGTGAACTG 900 36 100.0 35 .................................... AAGCGATATTCAAGGTTTTGTAACCGAACTCAACG 829 36 100.0 35 .................................... AGCAGTACTGGGGGTACGCGATCGCGTCGATTGGG 758 36 100.0 38 .................................... ATTCCTAAAGTTGAGAGACACAATTATTTGCTCTTAAG 684 36 100.0 35 .................................... CGAAAAGTAACTTTCGCATCTGTCCGACATATTCA 613 36 100.0 38 .................................... CAAACTGCATTTGTGGTTGTTCTGCTGGTTCCCCTCCC 539 36 100.0 37 .................................... GAGATCGAAGATGCGCAGAAGCTTACAACCAAGGATT 466 36 100.0 36 .................................... GGGTTCGCTGTAACCGTTCACCAAAAAAGCCCCCGA 394 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 9 36 100.0 36 GTCTCCACTAACCATGTGGAGGCGCATAATTGGAAA # Left flank : AAAAATAAAGATGCTTGGAAGAATAAGGTGTTAAGTTGTTTAAATTTTGTTGCTAAACAGAGCTTTACGTCTTTACAAAAGACTAGTCTGATGTATCAATTACATCAAGATTTAAAGCAAGCGTTGATTGATTATGAGTCACAGGCTTTCAGCGATTTGAATGTTTAAGTAAATAATTTGAATTTGCTATTCTATGATTTATGGAGATTCGATCGCCAACGACATCACCTAACAACACTACCTAAACTGCGCGAACCAGGAGGTGTATTTATCGAACGCTTGTTATATAACCGCTAAAGGCTTATCAGCTATAGCTTTTGAGTATTTTAGGTAAAAATGAGGTTCGCGCAAACTCTGTAATCTATACCAGGAATGTGTTTGAGGTAATTTTGATGCAAGGAGGACTTGACAAGCGATCGCGCAAACTGTACTTTTTTACTCTATCCGCGCAAACTGGTCTTGAAAGTCTTGTATATCAAGCCTTCTGGACTCCAACAGTC # Right flank : ACGGCGATCGCCATAAGCCATCGTGGTATAGTCTCCAGTAACAACATGGAGACTTTTGCATAAAAATCGTCAATCGCATCACAAATAGACGATTTTCTAATCTTCACCAACAATAATAAAAATACAGCAAATTGCAACTTGGTGAGGTACAGATAATTGTTGATTGTAGGGGCATTGGCACTGCCATGCCCCGAAGCGCGTACCTCATTTACCTGAAATATGCTGTATCATACCTAAACGTAATGGTAATTTACGAGTATTAAAAATACCAACAGTACGCGATCGCATTGTTCAACAAGCCCTATTAAATGTATTTTATCCCGTGATGGAGGCGAAATTTTCTAGTGCGAGTTTTGCCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTAACCATGTGGAGGCGCATAATTGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 66-2139 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRE010000153.1 Tolypothrix sp. FACHB-123 contig153, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 66 36 100.0 43 .................................... TCAACATTGCGCTGTCGCACGAAGGTTTCAGCCTGCTCCCTTA 145 36 100.0 42 .................................... CAGACAACAAAGACAGTCCGGCAGCCTACATGGGTGCCGTGT 223 36 100.0 37 .................................... ACACATGTGTTGGGTGCGATAGCGGCCGATCCAACAC 296 36 100.0 38 .................................... GCCTGGAGTTTTACAATCGCACTTAACGCTGCAATTTT 370 36 100.0 35 .................................... GCTCAATAACTTGGGATCACGAACGGTTGGATTAA 441 36 100.0 34 .................................... AAAAAGGATATGCAGCAACAGCGATACCGATTGC 511 36 100.0 39 .................................... GCTTATCGGTATTCTGATGTTGTTTATCAACTTTCTCCA 586 36 100.0 44 .................................... TTGGAGAATGACGCTTCCACCTTGAGAGGTGGAGCTTGCAGTTC 666 36 100.0 38 .................................... GCTGGTGTTTTATTGCCTATGATTTAGGACTTTTATTG 740 36 100.0 34 .................................... TATCGGACATGTGTACCCTTTTTGGATTGTATTT 810 36 100.0 33 .................................... ATCAAGGATGCCCATCGTGCGGTCGTCCACGGG 879 36 100.0 38 .................................... GGCACGAGAGTCACTGGGTGATCTGCCGCGCTTTTTCC 953 36 100.0 32 .................................... TTTCAACATATCAACCTGTTGATTTACTATTT 1021 36 100.0 34 .................................... GAATTCAAGCTCAATCAGTAATAGATTGTCTTGA 1091 36 100.0 35 .................................... ATTATTCATATGTTGCAACTATGCCGCGGTGTTTA 1162 36 100.0 38 .................................... CAGACGATCTTCGGAATTGTCGAGAGTGATCTCTAGCT 1236 36 100.0 38 .................................... TTTTGGTATTTCATGATCTGACTGTTTGTTGGTTTACG 1310 36 100.0 40 .................................... GCAGATTTGAAAATGAATAATCCAGCATCTTTCCAAGAAT 1386 36 100.0 37 .................................... ACTGTTATAGCGTTGTCTGACTGAACCTCCTACTTGA 1459 36 100.0 36 .................................... GTTACGGTTAAGGGTCTCTTCCAGGCTAACTGCATC 1531 36 100.0 37 .................................... TGGATATTTTATGTAGTCTGAATTGAACCAGACATAG 1604 36 100.0 38 .................................... GCCAGTGACAGATACATTTCCTCCGCCTAAAGTATTAG 1678 36 100.0 34 .................................... TGGTAGAAGTAGATTGATCCCGAGTGTCCACTGT 1748 36 100.0 32 .................................... CTTGGGCGGCGTGACGGTAAATTTCAAGATGT 1816 36 100.0 32 .................................... AAATGGCGCTCGTAATCGGAACTCCAGAAAGG 1884 36 100.0 33 .................................... AGGTTACTAATAGTGTGGTGCTAACTTTCTAAT 1953 36 100.0 38 .................................... TATAAGCGGTCTTGATCTGTGCAAGAGCGGTGAACAAG 2027 36 100.0 39 .................................... CATTGGTTAAATCTGCCGCAACCTTCATCCGTCACTAAC 2102 36 97.2 0 ...................................G | AA [2133] ========== ====== ====== ====== ==================================== ============================================ ================== 29 36 99.9 37 CCCCACCGATTGGGTTAATTCGGAATAATTGGAAAC # Left flank : ACTTTTACAAGTGGTGTCGATTTGCAGTCTGAAACCCTTACTGGGTAAGGGCTGCTAGACGAACTC # Right flank : GGACTTCCAGAAAATAAACTATTCCATTAACAAGAATGATAATCATTTTAAGGGGGGAATGAAGGGGCTGCCGTCGGCAGCCCCTTCATTCCCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCACCGATTGGGTTAATTCGGAATAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 54600-53777 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRE010000027.1 Tolypothrix sp. FACHB-123 contig27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 54599 37 100.0 34 ..................................... ACGCGCCCAAATTGCAACACTAAGAAGCAATAAC 54528 37 100.0 32 ..................................... AAACATTTTTTTAAGTTTTATTTGACGTTCGC 54459 37 100.0 34 ..................................... ATCAATTTAGAGCTAATCCCTAAAGACAGAAAAC 54388 37 100.0 36 ..................................... AATAAGTTGTACTTCTAACTTATCTGCTAATTCACG 54315 37 100.0 34 ..................................... ATTAAATCGGCGCACTTTTCACCTTCAGCTATGA 54244 37 100.0 36 ..................................... TTCGGGGATGTATTGCCACAAGGCAAAAGACAAAAT 54171 37 100.0 35 ..................................... AAGCGTACCGGAGTAAGTTGTTCCGTCTGGAGCTT 54099 37 100.0 34 ..................................... GTTAGCAAGAATCGCACCCTTGCGACCACGACCA 54028 37 100.0 36 ..................................... ACTGCCAGGGATAGGACGGACTAAAAGTGGCTCTAG 53955 37 100.0 34 ..................................... TACTGTGGTATTTTGTGTTTTGCTTGCTTCTACT 53884 37 100.0 34 ..................................... TACAATTCGATAAACCAGTAGACAATAAAGGCAA 53813 37 97.3 0 ....................T................ | ========== ====== ====== ====== ===================================== ==================================== ================== 12 37 99.8 35 GTTGAAATTTCAAATAATCCCTATTAGGGATTGAAAC # Left flank : CCTATGCTCGCTTTTGGAGAAATTTTAGTTTAAAGGACATGGTACTATCTTGTCCTATCTCTAAGTCTAATGTTTTGAGTTTGTAATTTTTTAAACATCAACTTAAACATCGGTTCGTCGGTTGCAGCTGGTTTGCTACAATCAGAGCAATGTGGCTGAATGCACCCGCTATTAAAGCATCTTGCTCACATCCTGGCAAGGTATCTATCACGCAGTCAGGTTCACCCCTATCCTATGTCAAACCAATGTCAAACTAAAATTTTCTTGGCAGAATGCGCGAAGGGGTAGGTGTAAAAAAAGAAGTTTGCAGAAAAATTGCTGAAACTCTTTATCTGTCAGGTTTTTCAGGTCTATTTAATATCGAAGCACCCGCGCGCTTTACACAGAAAGACTTTCAGGGATTTTGGGTTTGCTTGTTCTCTATTGTGCATGTTATGATTACTTCATTCGCGCTACCGAACCTTGAAAACTCCATATCACTTGACTTTGCAGCTTCCGCA # Right flank : ACCTTTTATCTAATTCCTGAGACACTTCATCAATTGTTAAAATTTCAAATAATATTTGTGACACATCAATATATTCTAGAGGTCACGGCAGTGCCGTGACCCTACAATCTGTCGCATTTTTTTTTCAAATTGTATTGCTAAGTTGCAGCACGAGCGATCGCTTCAGCTAAAGAGGTAGGTTTTAAGATCAATTCTGCAAAAGCCGAATGAAAATGTCCCAAATTGGGATTTGCTGTCAAACTCAGCCAAGTTTTGATACTTCCCGGTAAATCAGAATTCAGCCGTAAAGGTATTTCCGGTGTAGACAGGGATTGAGCGTAAGCTGGGGTGAGAAATGATTGGTAAATATTCGCTTCTGGCGTTGATTGTTTGACAAACGCCAAGGTAACACCACGAGTTAACTGACGCAGAGAATTAGTTTCTGCACCGCGCTTTTCTTTCACAATGGTAGTCACTTGATTCATGCTATAGGTAGGATCGCTAATACTTAAGTGAGTACC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCAAATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 37340-38326 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRE010000031.1 Tolypothrix sp. FACHB-123 contig31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 37340 37 100.0 34 ..................................... GAATACTTGAATGGTAGAAAATACAAGTTTGCTG 37411 37 100.0 35 ..................................... GTATCGATACTTTTGGCAAACTCTACAGCCTTATC 37483 37 100.0 32 ..................................... ACGCCACTCATGCAGCAGACTTGCGTTGCTTC 37552 37 100.0 35 ..................................... AAAAATTTGATGCTTGGATGCATAGATTCCAGCAT 37624 37 100.0 35 ..................................... GGCTTGGCATCTCTCCCAAACTGCAAGATGAAAAT 37696 37 100.0 36 ..................................... GAAAACTTTAAACCACAGAAAAGCGCCCATACTTAG 37769 37 100.0 40 ..................................... GCATAAATATTTTCATTAGTTCGCATGTACTAGAATAATC 37846 37 100.0 36 ..................................... ATACATGCGATCGCCATCCCTGGACATTCAGCAAGG 37919 37 100.0 41 ..................................... TTCCCCGGTGGTCACATATCATTAGCTGGCGCTAACTCTCC 37997 37 100.0 36 ..................................... CCTACTTGTCGAGCAATCATTTTTCTAGCTCTCCCT 38070 37 100.0 34 ..................................... CTTTAACTACTTTTTTTAAATAAGACGGTTTAGC 38141 37 100.0 39 ..................................... ACAGAGTTTTTGAATCATTAGAAGAAACGATACTTACAA 38217 37 100.0 36 ..................................... CTGAAAAAGGTTTAAAAGATGTTGAAAAACTTTTTA 38290 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 14 37 100.0 36 GTTTCAATCCCTAATAGGGATTAATTGAAATTTTAAC # Left flank : CTTGTCGATTGAGAACAGTTGCATGATGCGATCGCATTACCTAAAAAACAACGTCTCAACTCTAGGATTTTTCCAAACTTAGATTGAAGTAGTGAAAAGTTTATGATTGGGCGATATTAAAGTTGTAAGAATTAAATTATCAACTATTTAGAGGTGTGGCGATGGCTTCACCATTTCCGGGGATGAACCCCTATTTAGATAATCCCATTATTTTCGCTCAGAAATCCACAATCTGCTCATAGCTGCTATTTTCCGAAAATTGAATCCGCAATTGCGTCCTAAATATAAAGTTGCCATTGAAAAGCGAATATACCAAGCAATTGATGAAGATTCTTTACTAGTTGGTGTTGCTGATGTCGCGGTGCAATCTAGTTTGGTTAAGTGATGTTTTAAAAGAGAAGGGATTGAGAAATTAATAAATCAGATTTACGCAAATTTTACAAAAAATTCAATTTTTTCTTCTCAACAATTTCTTCACCGTTATAAGTCACACGCTCTAT # Right flank : CAGCGGAAGCCCGAAAGTTAAGCAATATAAGGTTTTCAAGGTTCTGGTGCGCGGATGAGTAAATCATAACACAAGCTATAGAAAACAAGCAAACCCAAAATCGCTGAAAGTCAGTCTGCGTAAGGTGCGCGGACAATAGATAAGTAATTAACTGGTGAAATTCTTACAGATAAGGAGTTTCAGCTATTTGTGTCAAAATCCTATTTTCAACACCTACCCATCCGCGCATTCTGCATAGGAAATTGTCATTCCCTTAATCAACTGCTACGGGAATTTGCAAAAATTCCCCCACTCGCCGCAGGTAAGTAGACGCATCTTCTAACATAGGAAAATGTGCTGTATCAGGAATCATCGCAAACTCAACATTATCATTCATTGCCGCAGCTTGCCGTCCCATTGGAGCCGGAATAATTTTGTCATACTCCCCCGCAACTAACAGTACGGGTACTGTCAATTTAGCAAACTCCTGAGGCATCACTTCCGATTGGGCTTTACTTACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATCCCTAATAGGGATTAATTGAAATTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 44362-44541 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRE010000033.1 Tolypothrix sp. FACHB-123 contig33, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 44362 37 100.0 35 ..................................... GGATGCACCTCTACGACCAAAAAACCCCACAAATA 44434 37 100.0 34 ..................................... AATCAGGGGTATCACACCCGAACTTTTGTGAACC 44505 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 100.0 35 GTTTCAACCACCATTCCGGCTAGGGGTGGGTTGAAAG # Left flank : TTTATTCACTAATCCGAACCTTGACAATATAATATTTTTATAACAGCGCCGCAGTTCATGCTCTTTTGAGCCAATGTGCTGTGATAAATCTGGGTTAGTTTGGCGGTTGGAAGATCGTCATGCTTTCTGACCCTGGTAGCTCCCCGCTCCCGATGCTGCCATCTGTAGAATTCTATAGATGGGATAGGTGCGCTCCCAGCAATAAGGAGTAAGGCTTTTTGCAATAGCCGTTCTTTTTAACGGTGCGGGTTACCGCAGTGGTAGCTACTGAATCACCCCCTTCGTCGGGGGAACCCTCTCAAATATTTTTTTGGCGTGTCAAAGTGGGGGCAAAATCCCTTGAGTCCCGCCAAAACCTCAAAACCTTTGTCATGTCTTAATTTCAGAAACTATTGTGTCAATTGATTTAGTTTTTTGATATGAGACGAAAGAAGCTTTTTAAGGGATATGCCAAATTTGTATCTAAAAAGCTTTATTTGCAAGAGGTCTAGACGGCAAGG # Right flank : GAGTGCCAAAAAATGTTTAACAGAGGGTTGAAAGGTGCATCCGACTTGTAAACATATAAAGATATATGAATATTATCAGGGAAGGCATCAAATGAAGATTTAACTATATTTCCTGTACAATAGATGTCTGCAAACACTTTATCGAATTGGTTAGACGACATTAATTAGTTAACGTTTCGCAATTGGCATTAGACGACACTAAACTGTTAACAGCGACATTAATTTGTTAGTAACGACACTAATCTGTTAAAGACGACAAATAATTAGTTAATCGACATGTACAAAAGCCAGCAGTCGGATTTGAACCGACGACCTTCCGATTACAAGTCGGATGCACTACCACTGTGCTATGCTGGCAGATTTTGCGAACCTCTTAAAGCACTCACCGATTTTTAATTATAGCATAAACAAGTTTTTTGTCTAGCAGGAGCGAAGAAAATTTTTGGTTGACGGTTGACCAAAGACCATCTCCCCCCGACACCAGAATATCTGGTAGAGTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACCACCATTCCGGCTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 10300-10047 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRE010000032.1 Tolypothrix sp. FACHB-123 contig32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 10299 37 100.0 34 ..................................... TCGCTTATAGTTTTATCCCCTTTCACCTCCAGTA 10228 37 100.0 34 ..................................... TTAGTAGAGATATTAGAGGATGAATTACCTATTA 10157 37 100.0 37 ..................................... CAAGAATTTGGCGCAAAAACTTAGCCATAGAAATACG 10083 37 91.9 0 ....T.............T..........G....... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 98.0 35 ATTGCAATTTCTCTTAATCCCTATGAGGGATTGAAAC # Left flank : CGGATATAAGTTTTTTCTTTGCAAATATCAAATTAAATTATGAATGAAATTGATTACATTCCAATTGCGGCATTAAATCAATATGCTTACTGCGCTCATCGCTGTTGGCGGATGTTTTGTGCAGGTGAATTTATTGATAATCAATACACAATTGAAGGTACAAGTTTACATGAGCGGGTGCATACAATTGGTGATGGGTATCGTGAGGATACTTGGCAAATCCGCGCCATTTGGTTGAAATCTGACAAGTATAAATTGATAGGTAAATCAGATTTAATTGAAGCGGAAAATGGCACATTTTACCCAATTGAATACAAGCGCGGTCGCAAGGGTGAATGGGATAATGATGAAATGCAAGTTTGTGCGCAAGCTTTGTGTTTGGAAGAAATGACGGGGAAGAGTATCAATACGGGTTATATATATTATGCACATTCACATCAACGTCAATTAGTAGAAATTACTCCTGAATTGCGCCAAAGTGCGATCGCTTGGCGCAGTGA # Right flank : CCAGAAGTACTAGCTGTATCTGTACCTAACACACCGCAAATCTTGCATGATGCGTTGCACTAGGTGACAACACACCCTAAAAATAAATTGTGTGTACAAATTTCAACCATGATTGAAGCAATGGGCAAAGTATACCTCGTAGGTGCAGGGCCAGGAGATATAGAATATCTCACGGTAAAAGCTGACAATCTTTTGCAGCAGGCACAGGTATTGGTATACGATGCCTTGGTAGATGAGCAATTATTGCAGCGAGTATCACCTGATTGTCTCAAGTTAGATGTAGGTAAACGCGGTGGTAAACCCAGCACACCCCAAGCCGAGATTAATCAGTTATTAGTTCATTATTGTCAGCAGGGTAAACAAGTTGTCAGACTCAAGTCAGGCGATCCGTTTATTTTTGGGCGCTGTAGTGCGGAAATTCAGGCTTTGAAAGCTGCTGGCTGTGCATTTGAAGTAGTACCGGGAATTTCTTCCGCCTTAGCCGCCCCTTTACTTGCAGG # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCTCTTAATCCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA //