Array 1 800-633 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNFH010000045.1 Agathobaculum butyriciproducens strain 1001099B_141217_D10 NODE_45_length_10703_cov_39.3927, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================ ================== 799 35 100.0 30 ................................... GCGGGGTACTTGAACCGCGCAGGCGATTCA 734 35 97.1 32 .......................A........... CTGGGGCACACGAACTGCGTCAGCTGGTTCGT 667 35 97.1 0 ....G.............................. | ========== ====== ====== ====== =================================== ================================ ================== 3 35 98.1 32 CCCTAACGGGCGGCACCTTTTTCTGCACCGGCTGA # Left flank : GTGCATCCAGCTGGTTCAGCGCCAGCTTGCTCATCACCTCGGCAATCTCCTCGAGCGTGCCCGTACCGCCCGGAAAGGCGATGAACGCATCTCCAAGCTCGATCATTCTGGTTTTGCGATCGGTCATATCCTCGGTGACGATCAGCTCGGTCAGACCGTCCAGCTGCAGCTCCTGCTCGATAAAAAAGCGCGGCTCTACGCCGATGACCTTACCGCCTGCGGCCAGTGTGCTCTCAGCGACCGCACCCATCAGACCGACCCGTGAGCCGCCGTAGACCAGTGTATGACCATGCTCGCCAATCCATGTGCCAAGCTCGCACACGGCGGTTTTGAGGGCAGGCTCACGGCCCTCGTTTGCACCCAGATATACGGTTATGTTCATAATTTTGTCCTCCATTATACAGGTGTATGCAGAGTGATCGGCGGAAATGCCGGAAATTTCGATTTGTGAATTCAGCACCGGCTGAACGGGGCGCGCGAACTGCCGCAGGCGTGTTCGC # Right flank : GCAGGGTACTCGAACTGCGTTAGCGGGTTCGCCCCTGACGGGCGGAGAGTTTTTCGCTGAGATGCAGCGGGGAGTTGCGCTCTGCGGAGCGCGGGAGAGTGCGGCGCCCGCCGCGGGGGCAAAAAGGAAGGGACACCTGCGGTTTCCCTTCCTCTTTGAACTCCTACCTTTCCCTTGCTTCCTAATCTGGCGCAGATTACCCACATGTGACCGCTCCGAAATTGGGTACGGCAGTCGGGTTACCGCAGCGTGTCTTTCTCCGCCTTTTCGCAGTATCAGATACCGTTCTGCTACACAGGCGGTTAAATTTCCGCAAGCGCGGCATAACAGTGCCGCGCGATTCTTTAGCGCGTTATTATAGACAGGGTCTGCGAGGATAAATTGTACCAAACGCCTAATCCGCAGGTGCCGTGCGGTATAACGTGCCAAAGAGTTGCGCAACACGGTCATGTTGCGCCTGCGTTGATTTAATCACATGTGTAGCAGTAATGTATCCGACC # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTAACGGGCGGCACCTTTTTCTGCACCGGCTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 23658-23292 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNFH010000002.1 Agathobaculum butyriciproducens strain 1001099B_141217_D10 NODE_2_length_332431_cov_68.9185, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 23657 36 100.0 30 .................................... GATTGGCCCGGCTAACCGTCACGCACCCCT 23591 36 100.0 30 .................................... TGATGTAAGCAATCTGGCCACCTTCACGCT 23525 36 100.0 30 .................................... TGCGAGAGTTGCTCCCCTTGGGCGGTGTGG 23459 36 100.0 30 .................................... CCTTGCCAACGGTAACGTGCCCATACGCTC 23393 36 97.2 30 ...................T................ AAAAATACATTTATTCTCCCACCACATCTG 23327 36 88.9 0 .......C..........A...G............T | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.7 30 GTTTGAGAGTTGTGTAATTCTTAATGGTAGTAAAAC # Left flank : TCAACTTAATGCTACGCTCGAATTGGATAATAAAAGGCTGCTTTTATCAGGGTATGCTGCAAAAAGGGATTTACTCGAGCTTAAGCTGACTAATCAGTTGTTCATTGATCAAAAGCGAGAGCAATATGTAAAATTACTTTCTAAATATATTATGCGTTGTGCCTCCTCAAAAGATGAAACACTGCCTATTTCGAAATTTGATGGTATAACACAAGAACAAAATCTTTCGTTATACGATTGGTTTGTAGCAAAAAGTGATCACTCGATATATCCGACATTTATGAAGGCCTTACATGCCCATTTATCTAATGGTCGAGCAATTTTCAAAGGCATGCCCATCAAGGAACAATGTGAACTTTTGCTCAAAATATTACAGGCTTTTCAGTGCAATTCTACTCATCCCAATCTTAAATGTATTGGAGGCTTAAGCGAAGAAACGAGATATCGTCCCTCTTCTAGCTTAGGAAAACTGCATTGGCACGCAGATAGCGTTCCCACTG # Right flank : AGGAATGGGCAAACATAATGGAAACTTGACAAAACAATTGTCTTGTGCTACGCATGTTAATGCATGACAAGAGTATGCTCACTAAGCACCCTCTGTCCCCGGTAGGCCATCACCGGGGACATTTTGTTTTTGAGACGTCATTTGCGTGGAATGGAGCAGCAAGAAGCAAGAACTTGACAAAGCAATGGCTTCGTGCTATTATATGGTTACAAAAGTCAAGAGGCAATTCAGCATTGCCACACCGAAAACCCCAGTATCAATACTGGGGTTTTCCTTTTGCTTTGAGCCATTTTCTCCGGTATTTCTCGTTCAAGAGGCCGTATTCAAACAGAATAACCAACGCACAAGGCCATCGAGCAAACGCAGTCCGATGACCTTTCTCATTCCTGCGAACTTTAAAATAAGGGTTGCACAAAACTTCAAACAGTGATATAATAAGTCCATCAAAGATAAGGCTGGTGAGTGCAATGCTGACGATTCAAACAGGACTAAACCGTTCC # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTTGTGTAATTCTTAATGGTAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 50943-50735 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNFH010000002.1 Agathobaculum butyriciproducens strain 1001099B_141217_D10 NODE_2_length_332431_cov_68.9185, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50942 29 100.0 32 ............................. TGGACAGCGTTTTAAGCAGTGCAGGGAAAAGC 50881 29 89.7 31 .......................C..T.C AAATAAGATGCGAATAGTGAGAATAATACAG 50821 29 75.9 29 T..C.......A...........TCT..A TACTTGGACGCACCTACCGTAATTTTGTC 50763 29 55.2 0 GAA.C.....T......A...T.CCCAAA | ========== ====== ====== ====== ============================= ================================ ================== 4 29 80.2 31 CTTTACCCCGCGTAAGCGGGGATGTACCT # Left flank : ACAAGCCTTTTACCCAGTGCCCGGGCAAACTCCTGCAAAGTCTCGATACTTGGATGTACAACTCCGCTTTCGATATTGACGAGTTCTTCCGGTGTTAATCCGGATCTTTCAGCCAATTCTTCCTGAGAGATATCCTGTTTTCTGCGCTCATAAATAATGAGTTCTCGAATCTCTCGGTAAATATCCCGAGGAGGCACCTCGGGTTCCGGCTCTAAGAAATCGGCAATATTTATTTTCGAAAACGCATCATCCAAATATTTTTGAAAATCCATAGCCATTGTCACAGCTCCCCAAAACATACTAATACATTATAATTATATTATAATCGCTCTCGAAAAGCAAACAAAGCTCCTCCATATGTGCATCTTGCGCATCTCTCGAAAATGGTAGGAAGGTTGACATTTATACCATTGAAGGGTATGATATAAACAATAGGACTCCCCACACCTCTTACTGATGTGCCCCAGGGGAGACATTCTCAATCTTTTCATATTTTATCT # Right flank : CTAATTGTCAAGAAGCGCAAACAGTTGCATTCTTTTATAGAGTATGGTATTATATCTTTATAAAAGTCTCTCTTTTTCTCTTTTGTGAGAATGTCACTCTCTGTTCTCTTTTGGGAGAACTGTTTCTAAATATGTCTACAAATCCGCTATCAGATTTTATTTTCTGGTGGCGGATTTTTTATATAAATTGTATAATAATTGCAAATGACCAACTTGGACATTTGCCGCGAAAGGAGTTTTTCTTTATGTTTACCCATCTTCACGTCCATACCGGTTATAGTATTCTGGATGGACACAGCCGAATCGACAAACTCGTCAACAAGGCTAAAGAAATGGGTCAGTCGGCACTTGCCATCACTGACCACGGATACATGTATGGTGTAATCCCGTTTTACAACGCTTGCACCAAGAATGGCATTAAGCCAATTCTCGGTGTGGAGTTGTACACAACAGAGGATATTACCTATAAGTCGTCCGAAAATCGCCATGCCGGCCATATC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.01, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCCCGCGTAAGCGGGGATGTACCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.00,-3.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 130816-130612 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNFH010000002.1 Agathobaculum butyriciproducens strain 1001099B_141217_D10 NODE_2_length_332431_cov_68.9185, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================== ======================================== ================== 130815 21 100.0 40 ..................... GTGGACCTCTGTATGTTATCAGTATAGCATATCTGTCGAA 130754 21 100.0 40 ..................... ATGAACCCCGCTGCGTAACGTAAATCCTCCCTTTGGCGCT 130693 21 100.0 40 ..................... GTGGACCCGAAAATTTCCCGTCGTGCATAAGACGTAAAAG 130632 21 95.2 0 ........T............ | ========== ====== ====== ====== ===================== ======================================== ================== 4 21 98.8 40 GTTTACCCCGCGTAAGCGGGG # Left flank : AGTTACAATGGTTCTAATGACGCAGTAGAAGTGTACAAGAAGTACATCGTAGACAGCGGCGAACAGCAGCGAAATCCACTCGGTTCCAAAATCGTAGAATATACGCTTCAGTTTAATGGCGGCCCTTATGTATGGGGCGGCTCTACACCGGAACAAGGCTTCGACTGCTCAGGCCTGATGTACTATGTATATGGCAAGTTCGGCTACAATATCATGCGTGTAGCTGAAGATCAGTACCATGACAGCGGTACATATGTGGATATCAATCATCTACAGGCAGGAGATATGATTTTCTTCCATCCGCAGAACGGCTCCGCCAGCGAGATTTCGCATGTTGGTATGTATATTTGCGATGGTGTATTCATCCATGCAGCGAGCCGCGCGAGTGGCATTAAAATCAGCTCTCTGAATGACGGATATTATTCTTCGGTTTATGTTGGAGCCAAGCGAATTATTGGTTAAGCGTGAGTATCCACCCTATTTCTGTAATTATCCCAAGT # Right flank : ATCCGTGCGAAACATCGGCCAGAGCTACTTTTGCGAAAAGTAGGAAGTTGGGCATGCATTGGTTATTGCCAAAGAACGAAATACATGGCCCCTGCATTTGCGGGGACAAGAAAAATGCTCGAATGCAGTTGCCGATAAAGCAGCTATTGCTAAGCGTTTTTCTTTTTTTCGTCCAAGATCATAAATTCCTAATTCTGCGATATGCTGCAAAAGACTTGCACAAATAATCAATTAGTGATATAATAAGCGCACAAAAGAAAATATTGTTAGGGGGAGAGCTTGTGGTTTTGCGAGAAGTTATTCCTGAACTGCAGAGGGGATTGCTTCCGGCGGATGTTCATCATCGTAGCGCGATTATACAGTTGGTTTGCGACCGATTAAGTGCGCATTTACAGAAGGATACTCTAAGTGCTTCCGCAATGGACGTACGGTGGGGACCGTGCTCTTTTTGTCCAAGAGATGCAATCAGTATTTACTGCCGTATCGCGGGCAAGAAGGAA # Questionable array : NO Score: 5.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:-0.5, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCCCGCGTAAGCGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 4 176602-175297 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNFH010000002.1 Agathobaculum butyriciproducens strain 1001099B_141217_D10 NODE_2_length_332431_cov_68.9185, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 176601 28 96.4 33 .........................C.. CGGTTAGTTTGCCATTTTTCGTTTTTTCGTTAT 176540 28 100.0 31 ............................ CGTTCGATATGACCCTTTTTTGCTCTCTGAG 176481 28 100.0 33 ............................ TCAGCTAGTGGATATAGCTTGCGATGGGACGTG 176420 28 92.9 33 ....T.........T............. GGCGATCGAAAACTGCTGTGCTTTCCAGCGTAA 176359 28 96.4 30 ...................A........ TATCACTATTTGATTCAGTTTGCAACTTTA 176301 28 96.4 33 .............A.............. CGCATTTCGCAAGAGCTTTTCTCGTGCTTCACC 176240 28 100.0 33 ............................ CATGACTTGCCCCAGTTCGGCCGGATCCAAATG 176179 28 100.0 33 ............................ TACGCGAAAATATCGCGAACTGATCTAATCCGT 176118 28 100.0 33 ............................ TATGCAGATCCTCGGCGATGGTTTTGTTCTCAA 176057 28 96.4 33 ...........G................ CGGTTATACTTTCGTGTTAGATCACTGGTGTGA 175996 28 96.4 33 .....................G...... CTGATATCTCAGAAAAATGTCCGGATATCTTTG G [175979] 175934 28 89.3 32 ...CT.........A............. TTGTCGATGAAGAGGGCGTACAGCCGGTGCGT 175874 28 89.3 33 ...C...................T.C.. TTAGATACAGTGCTCCTGTAACGGCGTAAAAGG C [175865] 175812 28 100.0 33 ............................ CAGGGTAACGGTGATGGTGGCGTCCTTTTCTGC 175751 28 100.0 33 ............................ CGCAGTTGTGGCAAGGCGGCCGGTATCTTTTGC 175690 28 100.0 33 ............................ CCGTTGAAGCTACAATCACTGTTAACCAAGAAG 175629 28 100.0 32 ............................ AGGTGAACGACAGGTTCATCGAAAGCACCAGC T [175603] 175568 28 96.4 33 ............G............... CAATTCGATATGCCTCCGGCTCGCAGAGCATCG 175507 28 100.0 33 ............................ CGCATCTGGGACAGATCGTGCTAATATGCCTGC 175446 28 92.9 33 ...........G..T............. CGGTTATACTTTCGTGTTAGATTACTGGTGTGA 175385 28 92.9 33 ....C......G................ TTAGTGATTGCCCTATCTGCGGATGTCGTATAC 175324 28 96.4 0 ...........G................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 96.9 33 ATTTACCCCGCATGCGCGGGGATCAACC # Left flank : GATACACTGGCAGCCATTGCATTTGGCAGTGAGCCGGCGCTCAAGGAGTTTATGAAGGATAAGCCGGTACCGCGTTCGGAGAGTATTGTAACCAAGCAGATGCTCATTCGAGTTTGTGTAAGCGCAGCGTACATTACGGGTATTTGTCTGTCGATCCTGTTCCTGCCGGCTGTGCGCAATCTGTTTGGCCTTGTGGATGTGACATATCTCAAATCTGCACTGTTTGCAACCTTCATGATGGCGATTACCTTCAACGGCTTTAACGCACGTACAGACCATTTTAATCCCTTTGAGAATATTGGACGCAATAAGAATTTCCTGTTGGTCATGGGGGCCATCTTGGTTATGCAGTTTATCTTCGTCACTTTTGGCGGAGAGGCACTTAGCGTCGAACGTCTGAGCCTGCATTCTTGGCTGATTTGTGCAGTTCTTGCATTCATAATCATCCCCATTAACATGATTCTGAAAACAATACTGCATAAAAAATAACATTTTTAAGT # Right flank : ATGATGCTCTCACAGCTGAAACAGCGGGAATGTCAAAGGTTGCACAAAAATTCCATTGGTGATATAATACCAATATACGCTGAATAATAAAACGTGCAATACTGGGGAAGGAGAAACTTCATGGACTCAAATATACATGTAAGCGAGTTTGATACCTTCTTCGTTCCAAACCGAACTACCACGCAATTTTTGCGCGTTATTTCCTTTAATCCAGAAGTTCAGGCTTCCATAAAAAAATATTATATGGAAGCTGTTCACGCTGGTGTAGTTATAGAAGGAGAATTGCAAAATCCCACACCGCAACAGTTGACGTATTATAACGAGATAATGCCTTCTGGTTTTAAACTGGATGTTGGTTTTATATCGGACAGTCTTCGTGTATGGCTTCCTCGTATGAACTCAACTCCGCGCACGCGAATGTCAGAGGCCATATATGATGTGCTTACTGGCCTGCGAAAAAAAAGGAAGACCGAGAGTATCCTGCAAAACGCATATATCAA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACCCCGCATGCGCGGGGATCAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 5 186889-186622 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNFH010000002.1 Agathobaculum butyriciproducens strain 1001099B_141217_D10 NODE_2_length_332431_cov_68.9185, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 186888 24 100.0 37 ........................ TTCCTTGAGCGCGAATTGAGAAATACCTCGGCACAGA 186827 24 100.0 37 ........................ TTCCTAGCATGATTGGCAGCCGGTGTCAAGAGAAATA 186766 24 87.5 36 .....................TCA ACCTCATGATGTTGTGGGCGCAGTTGAGGTGAGTAT 186706 24 95.8 37 ..............T......... AACCTTGTGTGGCGTGTCCGGGTGCAGGTATGCGAAC T [186701] 186644 23 75.0 0 ..-.....T..AT.T..A...... | ========== ====== ====== ====== ======================== ===================================== ================== 5 24 91.7 37 ATATTCCCCGCGAACGCGGGGGTC # Left flank : CTGCATAGCCATGGCTGCAACCTGTTTGTTAATGGGAACGGCGATTGCAGCGAATGAAACTCCCCAAAAGGTAACATCTTCGACACCTGAGGGTGTTACATATGGAGTGGATCAGAAATATAAAGCTCCACCGGACACAAGTCGTTATGCCAATATCAAGACTGCGGCTGGATGTGTTGCACTCCTTGTTTTAATCGGTTCCTTTCCTTTTATCGTTACACGAGCAGGGAAGCGTAAAGAAAAGGACGGCAATTCTGAAAAGGAATATGTAGAGACATCTCATAAGGAAGCAGTACATCGCATTGTTGATACAAATCAGCGCTATCGGGCCTATATCGAACAATCCAATGATAAGGGTTACAACCTCGTTGTTGTTGGAACAAACGGTTATTGGACCGGGAATTTTCCAGATGAGGAACATGCACATCGTTTTGCTTACGAAAACGGTATTGAATTGGATTGACTTCAACTCAAGCAAGCAAAATTTTAATTTTCTAAGT # Right flank : AACCTACGGTGGCGTGTCCGGGTGCAGGTATGCGAACATTTCCCTGCATATGCAGGGGTGCCCCAGCCTTCGCCGCTGACCTGAGCAAATAAAACGAATTCCCCTGCATAAGCAGGGATGCCCCATTCTCGCAGATATTAGGAATCTCGCCATCCGATCCCCCCTGCGTTGGCAGGGACGTTCCGACGCGAACTTGATTCAAACAATTCACTGCTTTTTGAATTCCCCGCATGCGGGGTTGGTTCTCAGAAACAGATGCCCCTTTCGACGTATCACGCCTTTTCTCTGCTTTCGCAGAGTTGGCTCAAGCGTAAGGAAGAAGGACGTCCAGTGGGGGCGCAACTTTCCCTGCATTGGCAGGGGCCTTTCAATGGGCAATAAGTACACAAATAGTCCCCGCATTGACGGGGTTGAACCGAAAACCAAAACGGCAAGTACAGAAGAGCTTCCCTGCGCAAGCGGGGGTTCCAAAGTGGTTTGCATTTGCCACAGCAATCTCT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATATTCCCCGCGAACGCGGGGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //