Array 1 85033-84672 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWNU010000004.1 Acinetobacter bereziniae strain ACIN00228 ACIN00228_c0004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================= ================== 85032 28 53.6 125 ...A.....AT.C..TCC...G.TTGTC TTCTTCAATTACCATATTCACTTTTTTCACTTTCAATTCAGCACGATCGTTTATTTTATCTGTTTTGTACACTGAGAGACGTCAAGAGAATACCTTTCGTATAATCTGATCATTCTCTAACAAGC 84879 28 92.9 32 A..........T................ CCTTACCAAAGCGATATAAGCCATCGCACCGA 84819 28 100.0 32 ............................ AATACAACTCGGTTTTGACTTGATCACGACTA 84759 28 100.0 32 ............................ TTGCTAACGTTTTGAATTGCCGAAAAGTCTGA 84699 28 78.6 0 ...........T...AA.CC....A... | ========== ====== ====== ====== ============================ ============================================================================================================================= ================== 5 28 85.0 56 GTTCACTACCGCATAGGTAGCTTAGAAA # Left flank : GTATAGGTAGCTTAGAAAATTGATCATATGTTATTTTCATTTCACACCTAGTTTACTACCGTATAGGTAGCTTAGAAATAGTACCTTCAAGCATAATGAATCGCTCATTCGTTTACTACCGTATAGGTAGCTTAGAAAAAACGGAACAATCTTTATTTATGATGAAGCGCGTTCACTACCGTATAGGTAGCTTAGAAAGAGATTTCTTCATTCGTAATTTGAATTGTTCAAAATTTGATTTATATTCATTTCTGTTTTATTATTTGCTTGGAGACGCCGAGTAGCGGTAACTACCCGACGCATTCTGTTAGTGAGCTGATTGAGAAATCAACAACAATAACAGGATGACAACGATGATTAGGTAAAAGCGCATCGTAAACCTCCAAGGATTAATGTAACGAAACACCGTTACAGGTCACCCTATCCCCAATGACTAGGGCAGGTTACTGTAACACAACAAAAAGCGCCCATGGGCGCTTTTTGTTGTTTAAAGAGATGAG # Right flank : TATAAACGCCTTAACATCTTAGCTAAATTTAGGAAAGTACAAACGATATGGAATAATTTTTATAGTAAATAAAACACGTAAAACACGATAATTTAAATGATAATTATTTGCACTATTAATTGCATTTGAGTATTTGGTAAAATACAATGTGCAACAATTCTTACACAATCCCTCCGTAATTTGAGTTGCGTATTAACATGAATAAACAATTAACACTTCAAGCACTATCTCTCTCCATACTCTCAGCAATGTCAATTTCAACATATGCAAACGAGACTTCAGAAGACTCTTCCAAGCTTAAAACGATCGTCGTTACAGCAAGTAGTCAGGCGGTCGATGTTAAAGAAGCACCAGCCAGTATTAGTGTGATTACCAGTGAAGATATAGAAAAACAACCGGTGGGTAGTCTTGGCGAGTTATTAAGTAAAGTACCTGGGGTTACTGGTGGAATTAGTCCTAGCAAAGAAGGCTCTAAAATTAAACTACGCGGTTTACCTGAC # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.25, 5:0, 6:0.25, 7:-2.56, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGCATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGCATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 85603-85335 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWNU010000004.1 Acinetobacter bereziniae strain ACIN00228 ACIN00228_c0004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 85602 28 100.0 32 ............................ TTCTACCCAAACCCGAGCAATCCTTAGAACAA 85542 28 100.0 32 ............................ ATTGATCATATGTTATTTTCATTTCACACCTA 85482 28 96.4 32 ...T........................ TAGTACCTTCAAGCATAATGAATCGCTCATTC 85422 28 96.4 32 ...T........................ AAACGGAACAATCTTTATTTATGATGAAGCGC 85362 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTTCACTACCGTATAGGTAGCTTAGAAA # Left flank : ATGTAATAAGGGATTTAAGCGAAATCAGTAGCTTAAAGCCCTTTTTTTATGCGTATAATAATATGTGATAATATCAGCCTACTAGGTTTAAATGGTGAAATTAGCCGATCTAGCCGAATAATTTACGTCAAGATTACGTCAAGCTTTTGAGTTTAAGATAATGAAAATACCAAAACCGATTAAACGTGGTGAAGTTTGTTTTACTAAGAAAATAATGAAATGTAAGATTTCTTCATTTTCTAATGATAAATTAAATGAGTGGCATTAAAAACATGTGTGAATATTGGAAAATCTTTTAGTGATAAGATAAAAGTAGCTGATTTAGAGTATATAGGCTTAATTAATCAAACAAATATTCTAAAATTTTACCCCAATATTTTTTAACTCTTTAACAACTGAATAAAATCAATAAGTTATAATTGTAAGTAAAAACTTGGGTCATTTGATGATTTTTAGGTTTAACTTACTGTTATTATTTTATTTTTTGTTTTAAAATTATA # Right flank : GAGATTTCTTCATTCGTAATTTGAATTGTTCAAAATTTGATTTATATTCATTTCTGTTTTATTATTTGCTTGGAGACGCCGAGTAGCGGTAACTACCCGACGCATTCTGTTAGTGAGCTGATTGAGAAATCAACAACAATAACAGGATGACAACGATGATTAGGTAAAAGCGCATCGTAAACCTCCAAGGATTAATGTAACGAAACACCGTTACAGGTCACCCTATCCCCAATGACTAGGGCAGGTTACTGTAACACAACAAAAAGCGCCCATGGGCGCTTTTTGTTGTTTAAAGAGATGAGGTTAACTACATCCTATCCAGCGTTTGTCTTCTTCAATTACCATATTCACTTTTTTCACTTTCAATTCAGCACGATCGTTTATTTTATCTGTTTTGTACACTGAGAGACGTCAAGAGAATACCTTTCGTATAATCTGATCATTCTCTAACAAGCATTCACTACCGTATAGGTAGCTTAGAAACCTTACCAAAGCGATAT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTATAGGTAGCTTAGAAA # Alternate repeat : GTTTACTACCGTATAGGTAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-86.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 73304-75431 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWNU010000007.1 Acinetobacter bereziniae strain ACIN00228 ACIN00228_c0007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 73304 28 100.0 32 ............................ AGTAGTTGAATTGGTTGCTTTGGATTTTACAG 73364 28 100.0 32 ............................ TTTTGTCACTAATATTAAATCAAGATATTCAT 73424 28 100.0 32 ............................ ACTAAATGTAAACCCGGTTTTGGGCTGAACGG 73484 28 100.0 32 ............................ AATGACTGCAACACCTACCAAACCTGTTGTTA 73544 28 100.0 32 ............................ AGCACGATCAGCAAGGCTTAGCAGAACAACAC 73604 28 100.0 32 ............................ ACTTTCTAGTTCAAAAATCTCACTATCGAGAG 73664 28 100.0 32 ............................ ACCTGAAGGCACAAGTGGATCGAGTAAGTATG 73724 28 100.0 32 ............................ CGGTATAGGTTCAAATCCTTCTTCATTGATAC 73784 28 100.0 32 ............................ TTATATACCTTGATTAGTGCGTTTGCCATCAA 73844 28 100.0 32 ............................ ATGACCCAACCAACACCTTCAACCAGCGATTG 73904 28 100.0 32 ............................ AACAACGTCAGGCTTATATGAATTTTCAACAT 73964 28 100.0 32 ............................ GACACCAAATAACACTGGTTCAACCCAAATGA 74024 28 100.0 32 ............................ ATATAAAAAACTAAAAACACCGATCAAAAAAC 74084 28 100.0 32 ............................ GAGTATTTATCTCAAATAATGAAATCAAAAGA 74144 28 100.0 32 ............................ AGAACAAGTGGAACAACAAATTAAAGAAGCTG 74204 28 100.0 32 ............................ TTATGGCTTTGTACGCCGAATGAAGTTTAGCC 74264 28 100.0 32 ............................ AAGACATTTGGACAATTACAAACTAATTTCTA 74324 28 100.0 32 ............................ TTGGTCAGATACGATCTTCGCCACAGTTTCAA 74384 28 100.0 32 ............................ TACTGGGCAAGATGAATCTTTAACAGGGTCTC 74444 28 100.0 32 ............................ GTATAGCTTGATAAATGCAAGGGCATCGGCAG 74504 28 100.0 32 ............................ GTTCGGATTTGGTTTTGAAGGGTCAGGGTCTG 74564 28 100.0 32 ............................ TTGTACCGCTCCCAGTAGATTGGAATAATTTA 74624 28 100.0 32 ............................ ATATTCACATCATTATTTCCCTTATGTACCAT 74684 28 100.0 32 ............................ GCTAACATCGCGTCCTGAGTATTCATATTTAC 74744 28 100.0 32 ............................ TTGCTGATCGTTTCAGGTCTAGAATTATCTGC 74804 28 100.0 32 ............................ TATGATCGGAGTACCTAGCATTGCCATTTGTT 74864 28 100.0 32 ............................ ACAGTTGAACAGAAACTTCACGCGCTCTAGTT 74924 28 96.4 32 ......A..................... TAAAATTAGTATGTACAAGACTTGGAAATTGT 74984 28 100.0 32 ............................ TGAAAAAATTCAAACGGTTAAGAAACAGGCTC 75044 28 96.4 32 ...........T................ TGTACCAAAAGCATTGGAACTTTTAACATTCT 75104 28 96.4 32 ...........T................ TTCTTGGTCGTGTACACGTAGCATTGCCCATA 75164 28 96.4 32 ...........T................ TCCTACGCTTTCCACGTCTGCAATGGCTTTGC 75224 28 100.0 32 ............................ ATTACCTAAACGTATTTCCCCGAACTCACCTT 75284 28 100.0 32 ............................ AAGGTATGAAAGCATTCTGGGTCGCATTTGGA 75344 28 100.0 32 ............................ CGACCATAGACGAAGTTGCCTTTGATTGGGGG 75404 28 96.4 0 .....................C...... | ========== ====== ====== ====== ============================ ================================ ================== 36 28 99.5 32 GTTCACTACCGCATAGGTAGCTTAGAAA # Left flank : TTCCAGAAACAGACTTGGAATCATACATAATTCAAAATTTTATTCTTATAAAAACAATAAGCACTATTTTTGATGAAATTTACGTTATAGCACAAGTTTTATTGAACTTTAACATCATATAAAAATAATCTTTTTTAGCAGTTTATTGGGTTGCAAAGGAAGTATGTATTATCGTTTGCAAGATAAATTAAATTTTAAATATTTGATTGATAGATAAATTATTTTATATGAGGTATGTCGTATGATTCTAAGGAGTGAATCTATTAGAGTTTGTATTATATACTGCTATAACTTGTTGCTGATGAGGCAAAAGGGAACAATTTTGGGAAATATGCTTTTAATAGAATTACGATTATTCAAATATTTTAACCCAATATTTTTTTACTCTTTAACAACTGAATAAAATCAATAAGTTATATTGGTAAGTAAAAACTTGGGTCATTTGATGATTTTTAGGTTTAACTTACTGTTATCACTTTATTTTTTGATCTAAAATTATA # Right flank : AAATTGTTAAACCTCTCTGATGATTTTAAAAATTTATAGTTGTATAAATTGTTTATTTTATAGCAATAAAAAAAGCCCACTTGAATGAAGTGGGCTTTTAGAATTTGGCTCTCCAACCTGGGCTCGAACCAGGGACCTGCGGATTAACAGTCCGTCGCTCTACCGACTGAGCTATTGGAGAATCTGCATGCGATTATAAGGATATATCACGAGTGGTCAAGCCTTTGATGTCATCTTTTCTTCATTTTTGACTTGTATGCTTTTTATTTAAACAAAAAAGATCAAAATTAAAAAAATGGATTTGAGTGGTTGCAAAGCGAGAGCTGACTTGTTAGATTAAAAACATAAAGAGCGTTTAAGTTTGACTTAAACCGTGTGGATTTAACCAACTTGCCAGCACTAAAATGGCTAAATAGGAGACAGCGCGATGACGACGCTAACTATTTCTCAAATTTTTGAAAAATTTTCTTTTTATCAAGAAAACTACCTTTCTATCCTGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGCATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTACCGCATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //