Array 1 38643-33525 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAUT01000073.1 Endozoicomonas acroporae strain Acr-1 Endo._Acr-1_73, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================================================================================== ================== 38642 28 100.0 32 ............................ ACCACAGAAATCGCTTATAAGTTGGATACTGA 38582 28 100.0 33 ............................ CAACAGAGACTTATTGGCCACATCCAACAGGAT 38521 28 100.0 32 ............................ CGGAAGGTGAAATCAATGCTGATTTTCACCTC 38461 28 100.0 32 ............................ ACAGAAAAAACCCGCCTGATAAAGATCAGAAA 38401 28 100.0 32 ............................ ACAAATCTTAGAAATAATCTGGTCAGAGGTCA 38341 28 100.0 32 ............................ GTGAAGGTTAATTTTATTGGTGCTACTCGTCG 38281 28 100.0 32 ............................ TGGGAATCAGGGCGGGTACTGCCGCAGAGCAA 38221 28 100.0 32 ............................ AAGGATCTGGACCTTGAGTTTGTGCATTCTCC 38161 28 100.0 33 ............................ CGCCAGCTCTGACAGAACAAACGCCTCACCGTA 38100 28 100.0 32 ............................ CTGATACCGTATTCAGGCTGAATAAAGGTAAT 38040 28 100.0 32 ............................ ATCACAGGCCGCTCGTCTGGACCGTCAGCAGA 37980 28 100.0 32 ............................ AGAGCCGCCCAAGTAGAGTGTGTGCTCATTTT 37920 28 100.0 32 ............................ GGAAGCTTTCAAACTGTCGGCAGACAACTTGA 37860 28 100.0 32 ............................ CGGAACGAACCGCGCTTGATGCCTGCTTTCAA 37800 28 100.0 31 ............................ GGAAAGCTCCAGTTCAGTTTTTTATGAATAG 37741 28 100.0 32 ............................ AGCATCACTGGCCGTGTACTGGAAGGATCATT 37681 28 100.0 32 ............................ ATCCGCTGTTGACTCGCTAACAATCACTGGAG 37621 28 100.0 32 ............................ AGTCTGGATGAATCAGAACGTCAGCGACTCAG 37561 28 100.0 32 ............................ GGGCCAAACGATCAAAAGCATGTCGTTCATAA 37501 28 100.0 32 ............................ TGCAAGGGCAAACACGTCTGGCCGGATGGCAA 37441 28 100.0 31 ............................ CCAAACATGAACACGACACAAAGAAACTGAC 37382 28 100.0 32 ............................ ATAACCCCATTTAGCAACACCAGGCAGAATTT 37322 28 100.0 32 ............................ ACATGAGAAACCACCATAACAGGTGTAATGAG 37262 28 100.0 32 ............................ ATATTGTCCCGCGCCATCAATCACCGGCGTTC 37202 28 100.0 32 ............................ TCCAGGCTTGCACGGCTTGCGACCGTGGCAGG 37142 28 100.0 32 ............................ TGCGGGCGCTGGATCGGCTGGGCAGGGCGCAC 37082 28 100.0 32 ............................ TGGCAGCTACGCCCCTCATCCCGACACTGCAC 37022 28 100.0 32 ............................ GAAATACTTTCTGGCGGCGGTCTCGATATCCC 36962 28 100.0 32 ............................ ACCCACTCCGAAAACTTGGGGAACTTGCTCAG 36902 28 100.0 32 ............................ AATAACAAAAGTGTCTGAGGGATTATTATGAA 36842 28 100.0 32 ............................ CTGTTCTGTCACGTACGTTTGAACCGGTTTTC 36782 28 100.0 33 ............................ TGTTTCATCTGCAATGGGAAAGTAATTCCCTGT 36721 28 100.0 32 ............................ AATGACATAAGAACCCCAAATAAAAAGGGGGA 36661 28 100.0 32 ............................ TATCATCGGTTTTCTCTTGCTTCTGGACGATC 36601 28 100.0 32 ............................ TGATGGGCAGTGTGCCATGCAAGGAGCCAACC 36541 28 100.0 33 ............................ ACAGTGTTGCCGACCTGCCCACGGGCACTACAT 36480 28 100.0 32 ............................ GTCGATAGTTCCGCAATATTGCTTAGAGCCGG 36420 28 100.0 32 ............................ AAACATCAGGCGACAAAGATAGAATAGATAAA 36360 28 100.0 32 ............................ TGCCCGTGTTCCGCCACGGCTGCGACTGCCAC 36300 28 100.0 32 ............................ TCTTTAGTTAGTGAGTGAGTGATCTAAATAGC 36240 28 100.0 32 ............................ AAATTATGGGGCGTTTTACTGAAGGCTGTAGA 36180 28 100.0 32 ............................ GCTGTTAATGACAGCCTGAAACGCCAGAACGT 36120 28 100.0 32 ............................ TCCATCTCTTCCGCCAGCACCAGGTAGTCTTC 36060 28 100.0 32 ............................ AGAATGGCTGGGGGTGCAAGTGCCGGGTCCGC 36000 28 100.0 32 ............................ GGCAGGCCGCTTTTGATCCTGGGCATATGGAT 35940 28 100.0 32 ............................ AGAAAAACCATTTTTATCGACAGCATGACCGT 35880 28 100.0 32 ............................ TGGCTGAAAGTTGGATCGAGGGATGACTCGTT 35820 28 100.0 32 ............................ ATAAACTCTTCGAAGTCTTCGCACTCATCCGC 35760 28 100.0 32 ............................ AGTAGAGGAGGCCGCCACGATCCAACCGCCTG 35700 28 100.0 32 ............................ TTCCCGAGGGTGGTATTGTCGGCGGTGACCAC 35640 28 100.0 32 ............................ GCTGTTGCTGGCGGTGAACAGCTCCGGGCCGC 35580 28 100.0 32 ............................ TGAGCCAGCCCGAAATCTGGAAGGCTCTGGGG 35520 28 100.0 32 ............................ TGAATACACCGGAAGTCAGCTTGATCGGCATG 35460 28 100.0 32 ............................ TTGCGGCTCTAGGCTTTCCGCCAAAAGTTCCC 35400 28 100.0 32 ............................ TCAAATGCTTTCATTTATGAAAGGCATGATTC 35340 28 96.4 32 ........................A... TGTATCTTTCAGCACTCGCTTAGATGCCCTGA 35280 28 100.0 32 ............................ AAAGAGGTGGGGGCCGGGCTTTACCAGGTCTT 35220 28 100.0 32 ............................ TGCACGGTTACCCGGGCACGATTGCCGGACGC 35160 28 100.0 32 ............................ TCTACCGGTGCGGCAGGAGCGAAGCAGTGAAC 35100 28 100.0 32 ............................ TTTATATAGAGAGGGTGAGCCCTGTTGCCGGG 35040 28 100.0 32 ............................ TGTATCAACACCGGATCAAAGGCAGTTTGCAG 34980 28 100.0 32 ............................ TGTTCGCCCACTTCCAGTGGCCACCAGTCCCG 34920 28 100.0 32 ............................ AGCAGGGTCGGCTTGTTGCCCAGCTTCTTGTC 34860 28 100.0 32 ............................ GCCAGTAGATACCTCTGCCTTTCGGGCTTGCC 34800 28 100.0 32 ............................ TTTGCTGAAATGCCCTTACCGGGACTGCACTG 34740 28 100.0 32 ............................ CAATTCCGGCGCAACGCATCGGGGCTGAGAAT 34680 28 100.0 33 ............................ CGATGAACAGAGAAAGTCTGTGTAGAGATAGAG 34619 28 100.0 32 ............................ GTACAGCCACCTCAGAGCTCATAGGACGGTTT 34559 28 100.0 32 ............................ AAGCGAAGCAGCAAAAATAGCGGGGCTGAAAA 34499 28 100.0 28 ............................ ATCATTGCCTCTTTAGTTAGTTAGTTAG 34443 28 100.0 32 ............................ TTTGCCACGAAAGCCAGCGAGATTGCTGCCAA 34383 28 100.0 32 ............................ TGGAAGACATGCCCTACGGGTACACCTATTTG 34323 28 100.0 33 ............................ TCAATAACCAGGGGAGCTGCAATGGCATCTTAT 34262 28 100.0 32 ............................ GGATGAATACGCAGTGCGCCTTGTATCTCAGG 34202 28 100.0 32 ............................ GTCATCGTAATAGAACTGCAGGGGCTGGAGCC 34142 28 100.0 32 ............................ ATTGGCCCGCGCCCATTTGAAAGCCACTCTAT 34082 28 100.0 32 ............................ TGTCGGGGCGGGTGTGAGTTCAGCCGGATTCC 34022 28 96.4 32 .....................C...... AGATTTTAAGAACTGAAGACTTGGAAGAAAAA 33962 28 100.0 32 ............................ CTAGAGAGTGCTAGGGATTCTTTACGTGATGT 33902 28 100.0 32 ............................ AGTCAGAAAGGAAAGTCTGGCCGGTCTGTCCG 33842 28 100.0 202 ............................ GCAAGCCCTCTGATCCAATGTGCCTAGTACATGGTTTCAATGAGTTTGACGTGTACGATCTCCGTTCACCCTGAGCGGAGTCGAAGGGTGCTTGGCACGATCTATCAGAGTCCGGAGTTTCCGCCCTTCGACAAGCTCAGGACGAACGGAGTGCGGAGGCACGACAACCCGTCAAACTCATTGAAACCATGTACTAGGGCCA 33612 28 100.0 33 ............................ GTCGATTTCTACGACAATGGCGTCTACTTTTGC 33551 27 71.4 0 .......A..T..A..C..C.CC-.... | ========== ====== ====== ====== ============================ ========================================================================================================================================================================================================== ================== 83 28 99.6 34 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAGAGCGCCATAACAAAGCCAGGGCTGTAGATGGCCAATTTAACAGCTACGGGCTGGCTTTGGATCACGCCACTGTTCCTGAGTTCTAGTACAGAAAAGCGCTAATGCCCATACACACTCCCATGCTTGCGTGGGAGTGCATACCGGAGCCTTCTGGATGTGGAACAATCCATTTCTACCCGGAATCATTGAAGTTAAACGGAGGTTCTAATTTGTGCAGCGGTTCGGTGTGCATTCTCACGGGAGTCCGTGGGAATATGTTCGGAGGGCTTGAACAGCCTCGGGACCTTGGGAATGAGGGTCTGTGTGCATAACAAAGCGCGGCCACATTAATGCCTATAGGAAGCCACTGTCGCCAGCGGCACTCAAAGACCCTTTTTTTTCGCTCTCTAAAAATATATTTACAATCAATGACTTAAATTCACTCTAAAAAATAGGGTGACTCTCCCTTTTTTCGATGGAACCCTTGCAGCAACTACTCTTTGCGCATATTGTCTTTG # Right flank : ACAAGACAAACGCCTCACCACTATCAACAACTTTTTGGATATAGAGGGATGCTTACACCTCCCCCCACAACACCATAAATGGAACCAAATAATCATATTGAGGTCGAAAGGCGGTGTTTATAGCCAAGTGTGCAGGGTTTATCTTGAAAGCGACAGCATTAACTTACTCTCACCCAAAGCCTGTTTTACGGGTTGGTCGACAAACCGGCTCCAGCGGGATTCCTGCCCCCTCCGGCAGCACATTTATCGGTAAAAGAATTTCAAATCTTCAGTCTCACAGAAAGAGAACCACTGCCCCGGATGAAGGCAAATGGATTGAGGATGCCTTTTGGAAAAGAAAACCATTAAACGGGCGTCAAGTGACCTCGGCGGTGGTGCTTCAAGCTTATTATAAATATGACAAGAGCTCTCTGAGGCCTGGCCTCTTCCTGCAAAAACTTTGCTTGCAGAACATTCTACATGGCAATAAAAAGATTACCGCGGATCAGGTCATGCAAGAA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 47805-51136 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAUT01000073.1 Endozoicomonas acroporae strain Acr-1 Endo._Acr-1_73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 47805 28 100.0 32 ............................ CGACAAAGGTCCCTTTTGCCAGGGCCGCAAAC 47865 28 100.0 32 ............................ ATATTGCCACCGCTGCCACAACTGCCACTTTG 47925 28 100.0 32 ............................ TGCCACCAGTGCCAATAGAGTTATTTTTGTTC 47985 28 100.0 32 ............................ CTGCAGGAAGACAGTGCCGGACAGGTGCTGAA 48045 28 100.0 32 ............................ TTTTATTCGATATCACATAGGTGTCGCTGGCA 48105 28 100.0 33 ............................ CGTAGGCGGCGATCACAGCCGCCGTTGACCTCC 48166 28 100.0 32 ............................ TGAGTTCTTTTCGCTTTGTCTCTGACAGCATC 48226 28 100.0 32 ............................ TGTGTCAGATGCCGAAGGTGTTCACCCAGGCG 48286 28 100.0 32 ............................ TTATTGAACGGTGCTCTGTCATGGTTTCGGGA 48346 28 100.0 32 ............................ ATTGGCAGACTGAACAACGGCATCAGGTCGCT 48406 28 100.0 32 ............................ TGCCTCAAGGGAAATGCTGGCAGGAAGAACCA 48466 28 100.0 32 ............................ TGGAGGCTGGCTTGCGCTCACAGGGCGTGGTC 48526 28 100.0 32 ............................ TCATCATGACGGGTGTCCCCATTGGCACATGT 48586 28 100.0 32 ............................ GTGAATTGCTGGTTTCTTTTGTCCAATGTTAC 48646 28 100.0 32 ............................ AATTATACAGCGTGGGAAAACCGCCTTATTGA 48706 28 100.0 32 ............................ AGGTGAGCAGGCCAATAGCGGCGCACTGCCAC 48766 28 100.0 32 ............................ GTTTCAGAAATTATCAGCACCTGGGCGCCAGC 48826 28 100.0 33 ............................ AATAAAACCGAGCTATCTATTACCCTGCTCTCC 48887 28 100.0 32 ............................ AACAAAGTTCTATTTGATTTTTTGCCCCTACA 48947 28 100.0 32 ............................ AGGAACGTTATCCAGATTCTGGCTCTGTTGCT 49007 28 100.0 32 ............................ TCAAGCTGTTTTTTGGGTGCAGGATAGACATA 49067 28 100.0 32 ............................ AAGAGATTCAGCAACGTCCCTGGCAACAAACC 49127 28 100.0 31 ............................ CCGGGCGCGAAAACCCAGAGCAAACGCTTCA 49186 28 100.0 32 ............................ TGGCGGGGGTAATGAACTCATGATGAGCCTTT 49246 28 100.0 33 ............................ CATACGGGTATCCATCGCCTTGGCCGCTGTGCG 49307 28 100.0 32 ............................ TGGTGTTGCTAAGTGGGGTTACGGGAAAGTTA 49367 28 100.0 32 ............................ ACAACTATTGTTGCTGCCATCACTGCTATTGC 49427 28 100.0 32 ............................ ATGCCCCCATCATTAATAGGCCCGCCATCATC 49487 28 100.0 32 ............................ AACATTATGAAGCTGGAAGGAAAGCCGCTGGT 49547 28 100.0 32 ............................ TTAGACGACGGCAGACTGTCAGCTTGCAATTC 49607 28 100.0 33 ............................ CTTAAATCGAATTTAAATACGTTTCACGGTGGT 49668 28 100.0 32 ............................ TGAACAGGCATTAGAAGGAACCACCATCTACA 49728 28 100.0 32 ............................ ATCAAGGCATTAAGTTCAGCGGTCACGGTGGC 49788 28 100.0 32 ............................ AGATTCAGGGTCTGTTGCTGACTGTTATTCTT 49848 28 100.0 32 ............................ AGTATGGCTTGCTGTTTGGCCGTATTGGTATC 49908 28 100.0 32 ............................ ATCCAGGGCACTGCGGATCTGCATCTGACCCT 49968 28 100.0 32 ............................ GTACAGGTAAGTCCGCAATTGCAGACAAAATA 50028 28 100.0 32 ............................ CGCCATCGTGACAGGCACCAGCCCCCAAGCTG 50088 28 100.0 32 ............................ TGGTTCAGTCGTTTGGCTTCAGCCTGGGCGGC 50148 28 100.0 32 ............................ GTTATTGGCGTTGTTGCTGGTTTGGCGGTTGT 50208 28 100.0 32 ............................ TTGATATCAAGGAATCAGAAGGGAATAGATAA 50268 28 100.0 32 ............................ CGTTCAGAGCATTCAGAATGGCGCTCTGTTCC 50328 28 100.0 32 ............................ ATTCAGGCATTGCAGGATAAACGCACACAATT 50388 28 100.0 32 ............................ TTCCTTCCCTGGCGCACCAGTATGACGGATTG 50448 28 100.0 32 ............................ TTGCCACCGACCAGGCAGATGCGTTTATAGAG 50508 28 100.0 32 ............................ TGCCGTTGCTCGCAATCTGGACCCGAGTGACA 50568 28 100.0 32 ............................ GTTTTGAAACACCCAAGCCTCAGACAGCCAGA 50628 28 100.0 32 ............................ ACTCTACAGGCTCACACCGTCGCCCATTCCGG 50688 28 100.0 32 ............................ TATCAGTGTCAGCGGTTAGCGGCTAACGATTT 50748 28 96.4 32 .........A.................. TGCTCAAAAGAAATCGGGCTGTCACTGGTTCG 50808 28 100.0 33 ............................ ATGGTGGGCTGATACTGGGGCTTTGATTGTTCT 50869 28 100.0 32 ............................ GGTCTACTGGAAGGTAGCCCCGAACCAATACC 50929 28 100.0 32 ............................ CAACCGGCAAACACCATCTGGAAGGTGTAGCT 50989 28 100.0 32 ............................ GGTTTCGGTACGGTCGGGCACATCGGCCACCA 51049 28 96.4 32 ....................T....... GCCACCCAATAACAACACCCTGAGATGGTGCA 51109 28 96.4 0 ......................C..... | ========== ====== ====== ====== ============================ ================================= ================== 56 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGCAGGTGGTATTGGCAATGGGGATATTCCAATACTGGTTATTATTTTTGGCTTCGGTGAGATAGAGCACCCGACCATCTTTCTGCATGATCCGGCACTTTTCCAGGTAATAGATATTGGCCCTTTTTGAATGCAGAATCGCCTTGAGATCAGTCAGCACTTCCATTGTGAGATACTCCTGTGCTGAACTCTGTTGTTCATTTTACGCATCAGATACTGACGGGTAGCAGAGATAAAGCGAAACGATGCTTGTATTTTGATCAACTTATCTGCCTTGTTTTGCAATTTATGCTGCCCAGCTGGCAGGGTGAACCTTAGTGCATTGTGCCGGTGAGTGAATATTGATTCAATTGACCTGAGTTCTATATTTCACCCTTTTTTTTGGGTAAAAAAATGGAGCTTATAAATCAAGTGGTTACAGATAGTGTTATTTTTTGGGTCAAAAAGCCTTTTTAGAGTTCTATCCCTTTAAATACGGGGGAGGTTATACTCAAAACTC # Right flank : ATGGCAGAAGGCGACGGCGAGCCCTGAAGCGGTTTAATGACTTAGGACACCTCATTAAGCACAATAGTGCCATTGATGACGAAGTAGAAAGTGACAAAGCAGCGTAAGAATTATTCTCCGGAATTTAAGCGTAAAGCCATTGCTATGCTATGGTAGTTGAATAGGGGCAGGCTGCTACAGAAGTGGCCAGAAGTCTTGGTATCCATTAACCTAAGACGCTGGGTACGTGAGCAGAATGAAAAAAAGGAAATGTCTTTTCCTGGCAAAGGGCAGCAAGCTCTGACGCCTGATCAACAGCGAATAAAAGAGCTGTAAGCTGAAAATCGCCAGTTGAAAATGGAGCAGGAAATCCTCAAATGCTGGTCAAGCAAATATTAGGTGATTACCTGAAACCTGAAAATCTACGGGGTACCGTTCAAACAGACCCTGAAAAAGAGGAAGACTTAATCGTCGCCTTTTCTGTCTGTATTGAACAGGTTGAGGAAAAATATTGGATGGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //