Array 1 2085466-2084889 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLKW01000004.1 Mycobacterium botniense strain JCM 17322 sequence4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2085465 28 100.0 33 ............................ CGGGGTGGTGCCCCAGCAGGCCGCAGCCGCTAT 2085404 28 100.0 33 ............................ ACCGAGGAGCCCCATGATCATGATGGTTTGGTT 2085343 28 100.0 33 ............................ CCGTTCAGGTCGAACCCAGAGAGAGACGACGTG 2085282 28 100.0 33 ............................ CGCGGCTGGGGTGACGATCCAGCTCGGCTACTA 2085221 28 96.4 33 .............C.............. ATCCTTTCTCTCTCTGTAAAATCGCAGGTCATG 2085160 28 100.0 33 ............................ TGTCGTTGTTGCCATATTCTTTTCCTTTCTTTC 2085099 28 96.4 33 .............C.............. TCCACCGATCGCCGCGCACACAAGCCCGTCGCT 2085038 28 100.0 33 ............................ TGCGGGCACTCCTATGCCAGTCATGCCGACAGG 2084977 28 100.0 33 ............................ GTGTTTGTCGGCGTCTATCAGCACCCCGGAGAA 2084916 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 99.3 33 GTGTTCCCCGCGAATGCGGGGGTGATCC # Left flank : AAACCCCACCCCACGCGTAGCCTTCTCCACCAACGCCAACACGACCACCGCCGCCGCGTCGGCGCGCCGCAGCAGCGCGGTCACCGGCAACAAGACGTGCGTCACCCCACAACTGGTGCACCGTGACCGACGTGGACACAGCTGCAGCGACCCGTCTGGGCCGCGTAGCTGTCGTGGCCTGGCCCACCCCCAACCCCTCAGCACGCCGCTGCACGCCGGGCACCTCAGCTCGCCCGCCGCCAGCCTGCGCTCGACTTCATCGGCATCCGCCTCTACCGTGACCACTGCGCCTCCAAGCGCGCAGACGGCCCTCCCGCAGACTCTTGCCGAAGACATCCGGGAGGGCCGTCGCCTACAACGACGTAATCACCGTGCCGCCCCGGCGCCGCGAACACCAAACCCCGACATGACCAGCCAACAACTGCTCACGGTCAGTGCCGGATATCTACCCTCTGGTGCTCAACCTGAGTGCCTCCCAACATCCAGGCTCTGACTCTCAA # Right flank : GAACCCCATGACACCGCTGCAGTGGGGATGGCGGTGCGCCTAGTTGCGTCCAGGGAAGTGGTGTACGAGCCGGTGAGGTCGGCGGGCGTGTCGTAGCCCGGTAGAGGGCGGTCATCGCGTGATTCTTCGAACGACGACCAAGTCAATCGAAGGAGACCAGCGCGATGACCGCATCCCAGCCTATCGACGTCGAGAAGCTGTTGGCCGATCAACTCGCCGCGGCGAGCCCTGATTTGCTGCGTGCGCTGCTATCGACATTTATTGCCGCCTTGATGAGTGCTGAAGCTGACGCGCTGTGCGGGGCCGGGTATGGGGAGCGCAGCCAGGAGCGCTCCAACCGCCGCAACGGCTATCGGCACCGCGATTTCGACACCCGCGCCGGCACGATCGACGTGGCGATCCCCAAGCTGCGGGCCGGCAGCTATTTCCCGGACTGGCTGTTGGCCCGCCGCAAGCGCGCCGAGCGGGCGCTGACCTCGGTGGTGGCCACCTGCTACCTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAATGCGGGGGTGATCC # Alternate repeat : GTGTTCCCCGCGACTGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 2092942-2088712 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLKW01000004.1 Mycobacterium botniense strain JCM 17322 sequence4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2092941 28 100.0 33 ............................ TGGTAGCACACAAGCTCGCGAAACTGGTCGAGC 2092880 28 100.0 34 ............................ AGGGATTCGGCTGCATGATGGGTAGTATTCGTGC 2092818 28 100.0 33 ............................ GAACCGTACCGCGGCCGGTACCTCGCGGAGGTG 2092757 28 100.0 33 ............................ CGGTGTCGCGGCGTCTGTGTGGAGACGTTGAGT 2092696 28 100.0 33 ............................ GAAGCCAGCACGGCCAGGCGCGGTGAAGATGGA 2092635 28 100.0 33 ............................ CTCGATCGCGAAATCCGCGTAGTACTCCCGGTG 2092574 28 100.0 23 ............................ GGCAAAACCACCCCCCCCCCCTC Deletion [2092524] 2092523 28 100.0 33 ............................ TCATCGGCCGCCGCGTCGACTCTCACAAGAGGC 2092462 28 100.0 33 ............................ CAACCCGACAGCGCTGTTGAGCGCCGCGAGCCA 2092401 28 100.0 33 ............................ CGTCACAACGTCGGAGTTCAAATGCAGCAATGG 2092340 28 100.0 33 ............................ TAGATACGTATCACCGCGGGCTGCGGCTCGGAT 2092279 28 100.0 33 ............................ TCACGGAGAACTCCCCCGGGAAGTCCCCGTCGT 2092218 28 100.0 33 ............................ TCCCCCACGCGACACGTAAACACAACCCCACGC 2092157 28 100.0 33 ............................ CTCAGCAATGAGCCGCCCGATCTACAGCACATG 2092096 28 100.0 33 ............................ CCAAAGATACCGGCTCGTCTGGGGGTGCGTCGC 2092035 28 100.0 33 ............................ TATGCCGGAAGCTTGCCTCCCGTTCCCCTTACC 2091974 28 100.0 33 ............................ TCGTTGTGAGGTGGAAGCGCGCTGGAGATTGTG 2091913 28 100.0 33 ............................ CGTTGTAGGTTGCGTCGTGGACGATCCCAACAG 2091852 28 100.0 33 ............................ TGAGCTGGCTGTCGGCGTACCCTGGGGTTTTAA 2091791 28 100.0 33 ............................ CAGACTGCAGTGGCGCTGTGTCAGCTCAGCTTT 2091730 28 100.0 33 ............................ GCCGCGGCCGCGCACCTCGTGGAGGAGTGGCCA 2091669 28 100.0 33 ............................ GATCAACCGCAGCAGCGTCACCTGACGCGGGAA 2091608 28 100.0 33 ............................ GATCAACCGCAGCAGCGTCACCTGACGCGGGAA 2091547 28 100.0 33 ............................ CGGCCTCGCCGTGTTTCTGCCAGGGCGATAGCC 2091486 28 100.0 33 ............................ TACCGCTAACGTGTCTTCCGCGTCCCCATACAC 2091425 28 100.0 33 ............................ CCACTTCTTCGAGCCGACTGCGATCGTGATGAA 2091364 28 100.0 34 ............................ CCCACCTGAGGGGATCGCCGCCGCCGTGTCCTGG 2091302 28 100.0 33 ............................ CGATCCTCGGAGGCCACATGGATGAGCACGGGT 2091241 28 100.0 33 ............................ CACTACTGTGGCAAAAGACCCTTAGCGGTTGCG 2091180 28 100.0 33 ............................ CGACTGGTTGGGTATCCTGTTTTTCGCGGCTTT 2091119 28 100.0 33 ............................ CGGGCTGAACCCCGTGAGGCTGGTAGCCGCGTA 2091058 28 100.0 33 ............................ CTCGTACCCCCAGTCTTTCTCACCTGTGGGGAC 2090997 28 100.0 33 ............................ GGTGCTTGAGGGGCCGGTGACGCCGAGGTTGTC 2090936 28 100.0 33 ............................ CGCCGGTGACACGCTGGCACCTGGCTATTACGC 2090875 28 100.0 33 ............................ CGGGTCGGCGATATCGGCCGCCACCGACAGCCC 2090814 28 100.0 33 ............................ CAGCTGGGCGATGATCACAGGGTAGGAACCCCC 2090753 28 100.0 33 ............................ CGAAAGCGGGATTTTATCAACTCCTCCCCAGAC 2090692 28 100.0 33 ............................ CGCCGGATTGTGTTGCGGCTCACCGAGCTTGGT 2090631 28 100.0 33 ............................ CCGATGAGGAGATGAGGAAAGGGGACAGAGGGT 2090570 28 100.0 33 ............................ CGCGATCGACGCCGCGGCATGGCAATACGGGGT 2090509 28 100.0 33 ............................ TCCGGTCTGGCCCGTAGCCGCACACCCGTCACC 2090448 28 100.0 33 ............................ GCCGACGGGCAGGAGGAGTCGCATGATCGTTGA 2090387 28 100.0 33 ............................ GCCCACTACATGGAGATGTGGGCCCAAAACATG 2090326 28 100.0 33 ............................ CGCGCCAGCTCCAGCACCGAGCCGGAAATAGTC 2090265 28 100.0 33 ............................ CGCCGTGAACAGGGGTGCGTCCCACGCCGTGAG 2090204 28 100.0 33 ............................ CCCCTCCCCATAGCCGAGGGGTGCCTGCTTGCT 2090143 28 100.0 33 ............................ TACGGGGTCCCCCCCCACGTCTACGCCACCCTG 2090082 28 100.0 34 ............................ CACGGCCACGACAGCCACAGTGTGGCTCACGGGT 2090020 28 100.0 33 ............................ GTCACCCTCGAGGTCGCTGAGCAGACTTTGAAT 2089959 28 100.0 33 ............................ CCTGGTGTCGGTCACAACCACCTCCACTGGGGG 2089898 28 100.0 34 ............................ CATCAGCCAGGAGGTGCTGGCGTCGCACCTCGGG 2089836 28 100.0 33 ............................ TGAGTGGATGATCGCTCACATGATGGCGGTCGC 2089775 28 100.0 33 ............................ GCGTGTGGCGTTGATGGCGAGGGTGGATTCTGC 2089714 28 100.0 33 ............................ CCGCATCACCTGGTTTCCAGGGAACTCGCGGGC 2089653 28 100.0 33 ............................ CAGCACCGGAACCTGCAACCCACGTGCTCCGAT 2089592 28 100.0 33 ............................ GGACATGCTCATGACTCCGATCGTGGTGGTCCC 2089531 28 100.0 33 ............................ TAGTCTGAGCTGCCGCCTTGTTCGGCTGGGATG 2089470 28 100.0 33 ............................ GAAGTGTGAGCCTCCCTCAGCTGCTGACACGTC 2089409 28 100.0 33 ............................ CCCAATGGTGTCGGCTGGGTTGGGGTCGCCAGT 2089348 28 100.0 32 ............................ CACGGTGATCGTGTTGACGTTGGGGGGTTCCA 2089288 28 100.0 33 ............................ CGACTCCTGGGCCCCCAGCCAGATACGCCACTG 2089227 28 100.0 33 ............................ CGGACTCGACTTCGCCGCCCAGGGAACAAACGC 2089166 28 100.0 33 ............................ CCGCACCGGGGCGCGGCCACTGGCACAGTCTCC 2089105 28 100.0 33 ............................ GCTTCGCTCACAGTACGCCTCGGCTGCCCTGGC 2089044 28 100.0 33 ............................ CGCCAGCTGATGGGCGCCGTCGACAAAACAACC 2088983 28 100.0 34 ............................ CCATGATCCCCCCCCCCAGGCGTTGACCATTCAC 2088921 27 96.4 33 .....................-...... TCCAGCTCAACCCGGCGCCCAGTCCAGCTGCGC 2088861 28 100.0 33 ............................ GCGACACGATCGGCGTAGGTGGGGCCAGGAACG 2088800 28 100.0 33 ............................ TCGTCGACGACCTGCTGACCACCTACCCCGACC 2088739 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 70 28 99.9 33 GTGTTCCCCGCGAATGCGGGGGTGATCC # Left flank : GAGCTGACTTCTGACCGTCGTTATTCTCACTGCGGTGCCACCGGGCTTGCGCGGCCACCTAACTCGTTGGCTCCTGGAGATCAGCCCGGGTGTTTTCATTGGTCATATTTCCGCGCGGGTGAGAGAGCTGATGTGGCAACGCGTGATCGAGTACCTCTGCGACGGCCGCGCGTTGATGGTGTATACGGCGCGTAACGAACAGCGACTCGTGTTCGAGGTGCATGGCCATGATTGGGAACCCATTGACCACGACGGTGTCTGCTTGATGCGGCGGCGGACCATGCCGGACTACGTTCTAAGTCACCGGTCTAGGCGCGACGTTGCTAATCGACCGGTGGATCCCGCAATGCAAGCGTCTGGTTTCGATTCTGAGAGGGTCTGGAAGCGCCGGCAGGCTAGGAGGAAGTTCAAACCAAAGCGATAAGGTGTAGCAATCGTCGGATTTAACCAAACCGATGTAGATACTGGTGTAATGTGCGCAATAAGCCTGGTCAGATAGC # Right flank : CACCGAAAAAGCCATCCAGGCTGTTGACCGGCGCTCAAGATGAGGATGATGGCGGCGTTGACGGTGAGGATGTGTGGGCGTGAAATGACCCCGCCGGTTGGTGTCCGGCGGGGTCGGTGCTGTTCGGGGTGTCGGGGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCCGCGCGGGTGGAGGATTCGTCGACGATGGCTTTGTTGGTGCCAAACGCGGCGACGAGAGCTTGCAGGGCGAGGTTGTTGACGGCGCGGGGGTAACCGCGGCTGGTCTGATGGATTAGGGCGACTGCGTCGTCGGAGAACAGGGTGTCGTCGCGTCCGGCCAGCGCCAGGTGGTGGCGCAGGTAGCTGGCGGTCTCCTTGTCGGTCATGGGTGGCATCGCGTAACGCAGCCCGATGCGCTGGTCGAGCGCGGCCAGCACGCCGAGTTTCATCCGCCGCCGCAGGGTGGGCTGGCCGACGAGCAGACAGGCAAACGGGCTCGACGAGTCGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], //