Array 1 532347-534251 **** Predicted by CRISPRDetect 2.4 *** >NZ_OCMV01000002.1 Acetivibrio thermocellus strain LQRI, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 532347 30 100.0 37 .............................. TCCTGGACGGTCTGGTCCAGGCTGGGGTGCTCCCGGG 532414 30 100.0 37 .............................. TACCACCCACCCTTGAGGAAGTAAGAGCCTACTGCCA 532481 30 100.0 35 .............................. TCCGGCTCGCCGCTCATGCAGTCAAGGGCAAGGAC 532546 30 100.0 40 .............................. ACGTAACAAAAAAATCGAAATCATTGCAAATTGCATACTC 532616 30 100.0 38 .............................. AGGAACTCCTGAAAGTACCCCTCAGAGGGTACAAACGC 532684 30 100.0 40 .............................. GCTCTAAAACCTTCATACCATCATCCTTTCTTGACACCTC 532754 30 100.0 38 .............................. TGATATTGTGCCATGAAATTTTGTTCAGGAAGTGCGTC 532822 30 100.0 36 .............................. AAATTAAATGTGAAGCATCCAATGTCAATCTTTGTT 532888 30 100.0 35 .............................. GTGCTTCAAGTTGTTCATCCCTGGTTTTAATATCC 532953 30 100.0 36 .............................. TTAATTCAGTGCATACACAGCTTACCCAATGCATTA 533019 30 100.0 31 .............................. ATCCAATCCAATCCAATCCGAATCCAATCCT 533080 30 100.0 35 .............................. ATGTGAATCCGGAGGCGGGGGTTATAGCTACCCTG 533145 30 100.0 38 .............................. TTATAAAGAGTTATGCCGGTTATATTTTCGCTTACAGT 533213 30 100.0 36 .............................. TTGTGCGCTCGCTAGCACCTGTTTTTTCGTTCTTAT 533279 30 100.0 36 .............................. AAATGCAAGTCGATACTATAACAGCAATTGAACAGA 533345 30 100.0 39 .............................. TGCTGACTATATCAGAAAATGAACTTGAATCACAAGCAC 533414 30 100.0 38 .............................. AATTTGGAGGGACGAAACTGTCAGACCCATCAATATTA 533482 30 100.0 39 .............................. CACATTATATCTCAACTCCTAATTTCTCAATTTGTTCTT 533551 30 100.0 36 .............................. ATATGGCAAACAATTTGATAACATCCTTTTCAGTCA 533617 30 100.0 40 .............................. TATTTCCATCTACTTCAAGCATTGGTACAGATTTAAACCC 533687 30 100.0 38 .............................. TGTTCCTGCGTGGAAAGGGAACAAAACATCAGGCTCAC 533755 30 100.0 35 .............................. CTCCTATAGATTCTTCCTTTGGTTGGAGGCTTCTA 533820 30 100.0 38 .............................. ATAGTGAAAACTTTCATTGCTTTCATACAAATCCCTCC 533888 30 100.0 36 .............................. TTTTAATAATTTTTTCCCATCCTGCATGCACAAATT 533954 30 96.7 35 .....................G........ AGGTCTAACCAGAACAGTATAACAAGGCTTATCTC 534019 30 100.0 39 .............................. ATTCTATACCTATCGCATTTCTATTGTTTTTTATAGCAA 534088 30 100.0 36 .............................. GATGGTGCGGATTTGAAGGATGTGCCGTTCAAATAC 534154 30 96.7 38 ..............A............... TAAATTTTCAGGCAACTGTTTTCAAAAGCTTTGATAAA 534222 30 83.3 0 C.........C.T......C.....A.... | ========== ====== ====== ====== ============================== ======================================== ================== 29 30 99.2 37 GTTTTTATCGTACCTATGAGGAATTGAAAC # Left flank : CTTGAGAAACATCTTATGGGAGAGCAGGAATATAAACCATACGTTGCTTCATGGTAAGGAGGATGTTTAAATGTTTGTGATTATGGTTTATGATGCAGGAGAGAGAAGAAACAGTAAGGTTTTAAAGGTGGGAAGAAAGTACCTTCATTGGGTTCAAAATTCTGTATTTGAGGGTGAGTTGACGGAAGCAAACTATCATAAGCTTAAGGAAGAGGTAAGACGCAAAGTAGACAACGAAGAGGATTCAGTTATATTTTACAAATTCAGAACGATGAAGTATACTGAAAGAGAGGTTATTGGAAAGAATGTTGATCCCAATAATTTTATCCTATGAATTTGTCGATGTGGAGTAGTGCAAAAAACCCGGGGGATCGACGAAATTTATTAATTCCCTTTAAACGCTGATTTGTAGCTGTTTAGAGGGATTTTTTGTTTTTTTGTATTGATTTTTATTTTGCAATTGGTTAAAATAAAAAGCAGAAGTTTAGCAGGCTTTATGG # Right flank : CCGTTTATTCTTTCCCTCTTCGTCAACTTTCAATATCCGTGTTTTTTTTACCCGTTAAGGATTGAACCTTTTGTTATCGTATAACATATAATCTTAAAATTTTCTCAAATGGCAATAGTAACCTCGCATGTATTAATAAATATACATTGCAATAATTAGCATTTTGGCATCGACATATTATCACGTATTTAATAATATGTAAGACGAAATTTACTTAAATTATGGGAACTTCCAGAGGTGAAATACATTTGCTGTTGAGGTCGGTTAAAACTCAGTTTAGATTAATGGTCAACAAACGTAATTTTTGGGTTGCCATCTTCCTGGGACTGTTTTACTGTATAATAAGTTATGCCCATTCGCTATATATTTATCGGGGATATGATGTTTCGGGAACTCTTAATGCAGCGTCGCTTTTTATTGGAAACGCCGATACGGCGCTTTTTGAAAAGTATTTTCTAATTTATGTTTCCGTTTGTGGTGATTTTACCATTTTCATTTTC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 2092680-2095923 **** Predicted by CRISPRDetect 2.4 *** >NZ_OCMV01000002.1 Acetivibrio thermocellus strain LQRI, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 2092680 30 100.0 36 .............................. TTCTTCAGGAAGTGAGTAAGGGTAATAAGGGGGATA 2092746 30 100.0 37 .............................. TGCTCAGAATATGGCTAGGCATTTACACGTTTGATGG 2092813 30 100.0 36 .............................. TGTTGGATGCCATACGGAGAGGCGCATTGGATTTTG 2092879 30 100.0 37 .............................. ATAATGACATTTATGGTACTGTTGTGGTAATAGACGA 2092946 30 100.0 38 .............................. TAGTGCATCTTTGGAAGACGAATGAAGAATTCAGAGAA 2093014 30 100.0 37 .............................. AACCTCTGTTTTTCGTCGTCCCAGTATTCCTTCCTTG 2093081 30 100.0 36 .............................. GGATAAACATTCAGAACTACTCTTTCAAAATACTCA 2093147 30 100.0 36 .............................. TTAAACCCACTTTTTTGAATTTATGATTATGTATTA 2093213 30 100.0 37 .............................. TCGCCTCTTTGGTATTTCGGGCGTAAACTGCAAAGAC 2093280 30 100.0 37 .............................. ATATTTAGGCTATACTCACCGGCATTCAGTTCCATTA 2093347 30 100.0 39 .............................. CTGGTATTCAATGTTCTTGCAAAATTGTTCCATTCAGAA 2093416 30 100.0 38 .............................. CCGATGACTCTCTTTGGTTGCTTGACGATAGTCAGAAA 2093484 30 100.0 37 .............................. TCATAGAGTATAAATCAGCCAAATCATTCCTAGCACC 2093551 30 100.0 36 .............................. TACTAACGTGTACCGTATAACCGACTATAAAAATCC 2093617 30 100.0 36 .............................. AAGGATAATAGTTGGGTTTTTGTACATAGTGTATGG 2093683 30 100.0 36 .............................. TATACGTAGCTCCCAGAATCTGTTTGAACTCTGTAA 2093749 30 100.0 36 .............................. TAAAACAAACTTCTACTGCCACTGGTCGGATTGTTC 2093815 30 100.0 35 .............................. TAGAAATTGGGATAAGCAGCTTTTAGAATTGCCAT 2093880 30 100.0 36 .............................. ATGTGGAGGTGGCGGTATGATATGTATAGGGCTAGA 2093946 30 100.0 36 .............................. AAAGTTTAAACCCTGGACGTTGTATGTTTGCGCCTG 2094012 30 100.0 39 .............................. AATACCCCAAAATGAAGGTTCAAGTCATTCGAACAACGA 2094081 30 100.0 37 .............................. CCAATTTTGTCTTTGTCCTCGTCAACACCTTGACCAA 2094148 30 100.0 36 .............................. TTAAATGATCCTCCGGTAACACTAGAAGCCGGAACA 2094214 30 100.0 37 .............................. AGCTATACCATATCAATACAGATCTTGCACCGTGATA 2094281 30 100.0 39 .............................. CACTTCCGGGATGGTAGTCAGTGCCATCGGGCTTGACAT 2094350 30 100.0 36 .............................. TCGTTCAGCCTCCCTATGCTACATACCGGATGTAAT 2094416 30 100.0 36 .............................. CCGACTGTTCGACGTAGACGTCGACAGGAGGAAAGA 2094482 30 100.0 38 .............................. TTGCAAGTCAGGTAATGCCTTTTGATACCGGTACCATG 2094550 30 100.0 38 .............................. AAGACACTGAGACTCTTTCTATTAGTATTGATGGAAAC 2094618 30 100.0 36 .............................. TGTAAATAAAGCTATGAAATTGAATGATTATATCAG 2094684 30 100.0 36 .............................. AGCAACAGAGCTACGAGTTAGGAGAAATGCCCGTAG 2094750 30 100.0 37 .............................. ATTGTATTGACTTGAACACTACCAACTGATAATGAAG 2094817 30 100.0 36 .............................. GAGTATAAGGCTAAATGGTATGGCAGAACGTACCAC 2094883 30 100.0 39 .............................. ACATTCAACACCAGCTTTCTGCCCTATGACCAACCTATC 2094952 30 100.0 42 .............................. GCCAACGTTCTAAAAATTCACATACTCTTATTTTTTCTGCTC 2095024 30 100.0 36 .............................. TCCTCAATCTGTTTTTCTGTAAACATCCACTAATAC 2095090 30 100.0 37 .............................. ATCCAAGGATGTTGACCAATGATAGTTTCATGTGATA 2095157 30 100.0 37 .............................. TCAATGACCAAGAGTGAAATTGCGAAAATACTTGCGG 2095224 30 100.0 36 .............................. TGGCCCATACTACATACCACGGTGGCTAGAAAAGGA 2095290 30 100.0 36 .............................. AGAATAGGCACAATCGGAAGTGAACAAGGAGAAATA 2095356 30 100.0 36 .............................. TTGCAGATACTACATCGGCTGGTATATCTTCTGGTG 2095422 30 100.0 38 .............................. TTAGTTTATAGGGAGATATTGAATCTCCCTATAATAAC 2095490 30 100.0 37 .............................. ACAAGGCGGGAATGGGTGAACACTTTACAACTGTATG 2095557 30 100.0 37 .............................. AGTTTCCGGCATCTCATCCCAAGTCCGTTCATCCAAA 2095624 30 100.0 38 .............................. TAAGTTGGGCTTCTAATAGAAGTTCTGGTGCTGTTGGA 2095692 30 100.0 38 .............................. CTTGATTTTGATTTTCAAGCGGATTATGCTTCAAAAAA 2095760 30 100.0 36 .............................. TATTACCATAGCCAAGCGGCGGTAAATATCTCACAT 2095826 30 96.7 38 .............................T TGTAATAGCATCGACAATAATGTTGTCTTGATTCAGTC 2095894 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ========================================== ================== 49 30 99.9 37 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : TAAAAAACGGTGTAACACTTTTTTAATTGTTTGAATACTATGATACCGTGAAGCAAAACAAAATAGGAAAGGATGAGAGGTATGGAGGAGAATAGAGGTTTTGGCTGCTTTTATGGTAATGACATTATTTGGTTGATAATTATAATTTTGTTTATTCTGTGCTTGTGTCCGGGAATTTTCGGCGGTTTTGGCGGATGCGGCTATAAGAATTGACCGACTGCATGTACATAAGAATCTAAAGAGGGGAGGTAATTGCCTCCCCTTTTTGTTATAATAGGGATATGCGGGGAATTAACTGAGTTGATGGGAGTAATTTTATTTATAAGTTTATGGTTTGTCGATGTGGAGTAGTGTAAAAAACCCGGGAGATCGACAAAGTTTGTTGATGTCTTTTAAATGCAGGATTATGAATAGTTTGAGTGATTTTTTTTATTTTTGTTATTGATTTTTATTTTATATGTTATTAAAATAAAAAGTAGGAATTATGCAGGTTCTATGGG # Right flank : TTTCTGGCTACTCCAAGTTCCTAATGTTATATATGGTTTTATAGTATAAAGCCTTAAGCGAAAATGAATAGGACTGTATAATAAGGTTAAGGCTTTATATTCGCCTGAAGCGTAAAAACGCAATAGGAAGAATAAAATTTTTGCCGGGGATAGGCCAGCCTTGCAAACTGGCTGACAAGCGAAGTCTCCCCGCTTCCCCGGCAACAATTTCAAATAGGGAGACAGAAAGGGAGACGAAATATGGAATCTATGAAAGGGAAAGTCATTCGGGACATTAGGAACCAGGAAGCAAAAAGAAAGCAACTCCAAAAGGAGATCTTCAACCAGCGGTACAATGCTACGAAAGAGGCGAAGTTCATAGACAAGGAGGATATAAATATGAATAGCTTCCGGGCTATTCCTAAAAGCGTGATACAAGAGCTAGGCTTATCGAAAGCGGCCCTGGCTATCTATCCTGTCTTATGTGCAAAAGCAGATTTTGAAAAAAATAACTCTTTTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 2109256-2111163 **** Predicted by CRISPRDetect 2.4 *** >NZ_OCMV01000002.1 Acetivibrio thermocellus strain LQRI, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================================================================== ================== 2109256 30 100.0 38 .............................. GATAAAAAATGTTGGTGGTCTTTGATGGCCACCAAGTG 2109324 30 100.0 36 .............................. TAAATTACTGCAATATCTCTGATATACCTGAAGCTC 2109390 30 100.0 39 .............................. TTGAAAACATTGTACAGGCAATCGCGCGTGACTGTCTAG 2109459 30 100.0 36 .............................. TTGCCGGCACTGTCGGTAAGATCCCATTCTGCCGGA 2109525 30 96.7 36 .............................A TTCTTCCCCCTTCCTGCTCAGCACTTCAATAGCTTC 2109591 30 96.7 37 .............................A GCCTGCCACTGCTCCCATCTGAAACCTTCCTCCTCTT 2109658 30 96.7 37 .............................A TCCTATTCATAGGTACTGGGAAACCCAGCATGTTTGT 2109725 30 96.7 37 .............................A TTGGTGTTTCCGAGGTCTGCAATTGCGCCAGCAACAG 2109792 30 100.0 40 .............................. TTAAACAAGCTGCCATTGAAGCGGTTGCTGCTTCCAATCC 2109862 30 100.0 36 .............................. AACTTGAAAACATTGGCATTGGAATCAGTGAAATAA 2109928 30 100.0 40 .............................. TATTTTCAGCTTCTTGCTCTGTGTTATACTTACCAAGCCA 2109998 30 96.7 36 ....................A......... GGTTCTAATACATGCATAATCGAAATGTTCGAAGGG 2110064 30 100.0 36 .............................. ACTGCAAGATATGGCTTTCCGTCAACTTCATAATGA 2110130 30 100.0 38 .............................. AAAGCAAAAGCGATTGCAGCTCTTGAAAAAGCAAAAGG 2110198 30 100.0 37 .............................. CGATTGACAGCAGAGAAATAGCAGACATGTTGGAAAT 2110265 30 100.0 37 .............................. TGCGCAAACCGTTTTCCACACAAAAAACCGTTCCGTG 2110332 30 100.0 39 .............................. TCTTTGTTAATCTCTACTCTTCTCAAATCACCGTTCCAG 2110401 30 100.0 37 .............................. CTATTTTTTCATTGGATTGATTCCACAGCCATTCTTC 2110468 30 100.0 35 .............................. TTTGTGTTTTACTCTGGCTTGGTATTCACGGAGTA 2110533 30 100.0 37 .............................. GGGTCGAAGGGCTCATAGTTGCCTTGGAAACCTATGC 2110600 30 100.0 37 .............................. ACAGCAGGATTAAAGAAACATTTATTTTCGTGTTCTC 2110667 30 100.0 37 .............................. TTTCATTCCATCAACATATAAAGATGAAAGCGGTAAA 2110734 30 100.0 36 .............................. TAGAGTATTCCAAACTGCAGAAGTGGGAGGATACAA 2110800 30 100.0 38 .............................. TTTCTCTCTTTTCTGGCAGGTAATCCACTTGGAATATG 2110868 30 100.0 36 .............................. GAGGATTTTTTGAAAATTGGGAGAGTCGCAGGAGAA 2110934 30 96.7 39 .............................C TCCCAAGTATCTGTATCTAACTGATATCCTGCAGGACCT 2111003 30 90.0 100 ..G................A........T. AAGTATCATCTATATAATCAAATCTATTATAACCAGTTTTTATCCTAGATGTAACAAAATGAGACTTAATAACTATGATGCCTTTAGCAATTTCACTTCT A [2111028] 2111134 30 76.7 0 ....C.G.T.C..T.G...T.......... | ========== ====== ====== ====== ============================== ==================================================================================================== ================== 28 30 98.1 40 GTTTGTATCGTACCTATGAGGAATTGAAAT # Left flank : GTAAAGTGGAGAACTTCTCCGACACCATCGGACGAACAAAGGACAGCAGAATCAGGGAACAGCTTGAAAAGAAGCTATCCCAGGCCTTTGATGATAAAGAAAGCTTAGAGAGCGAGAATAAGAAATTTGAACGGGAAATAACGGAATTACGGCAACAAAAGGCCGGGCTGGAAAAAAACATTGAACAGGCTAAAGAAATATATCAGTTATTAAATTCCGCCCAAGGTGAGACAGAGAGAATTGAACTACGCTTGCGCTTGCGCCAGCAGATTCAGAAATCTATTGAATGGATTAAAATTTATCCGCTTCAGGAACCTTATCAGGAAATACAGGAAACCGAAGAACCCGGCATTGTTAAGATTATGAAAAGCAAATATATTGACAAGGTGCGAATTAAGTTTCGGGGAAGCCGAGACCTCCGGGTGCTATACCTAAAGAACCATGCAGAACTGAGCGAATAGCATAAAACCGTTTATAATATTCTGCCATGTTATCACCCT # Right flank : TAGGCAGTAAATCTAATTTTATTAATATACAATAATTGCCTTTCTTGTACCTACAATAAAATAGGACAAAGTTTTGCCTTTTGTCTTCATATACTTTATGTCAATACGCTTTTTGAATTTACGACAAATTGTACAATTTACTTCTTAAATTCTATTCTCTGTATCATTCCGTTATAAAAACTAAATGTAAAAGATTAAAAATCAAAATTAAATTTGATTATTATGCATCTTATGGTAATATACTTATGTAACTTTAAGTTGTTAATTGGAAAATAAACTATGTTCGTTACGTTACTAATTTGAAAGGTTTGGTTTGATTCCAAGCTGTGCAAAATGAGATGTTTTGCACATGGTTAAAGGATGTGAGGAAATGTAGGAACGATATGCAAAATTATACAGTATTCTGACATTATCAAAAAATTAAAAAAGATTGCAAAAAAATAGTTTACCTAAAATTGATTATGCTGAAAAGAGGGAGGATTAAAATGAAAAAAAATATT # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 3044881-3050270 **** Predicted by CRISPRDetect 2.4 *** >NZ_OCMV01000002.1 Acetivibrio thermocellus strain LQRI, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 3044881 30 100.0 37 .............................. TCTTCATCATCGGATATCTTTCTTTCCATTTTTGGAC 3044948 30 100.0 37 .............................. TTTGTTATAGAGAGTCATTTAATCAATATTGAATTAG 3045015 30 100.0 36 .............................. TGACAGCCCAAACGAAAAACCCAATTGCTACATTCA 3045081 30 100.0 36 .............................. TTTTGAAGATAATTTTGGAGAACGGGCTGCAAGAGA 3045147 30 100.0 36 .............................. TTTCATTTAGAACTTGATTCGTCATATCATCTCTGA 3045213 30 100.0 37 .............................. CCAAGAAAAGCGGCGACAAGATTACTTCGATTAAACC 3045280 30 100.0 38 .............................. ATTTTTTCAAGGATGTATTCGATGTCTTCATCTCTTCC 3045348 30 100.0 37 .............................. TAGCTTCGCATGAAGTTTGATTGTATCACGCTATTGA 3045415 30 100.0 37 .............................. ATATATCTACTTTCTGAAAACCTCCTCACAAAACAAC 3045482 30 100.0 37 .............................. TAAGAACTAGTCTATCAGAAATATCACCATTTAAAGA 3045549 30 100.0 36 .............................. CAGATGGGATGAATAAGGTCTTTAAATCCTCTTTTA 3045615 30 100.0 36 .............................. CAATATATATCAGCATTTTCCAAAATCCAATCCATT 3045681 30 100.0 38 .............................. TCTTGATGACTATTTTGGATGGTTTGATCCCGTTGCTT 3045749 30 100.0 36 .............................. CACTTTTTGAAAGTATAAATGAGGAGGTATTGAAAG 3045815 30 100.0 38 .............................. ATCAGTCTAATACTGGACGTAAATATATAGGTGCTATC 3045883 30 100.0 37 .............................. GTATCAACAGTAAATTCCCCATCATACACCTTATTGG 3045950 30 100.0 38 .............................. GGGTCATCCCCTGGAAGGGAGAATTCCGCACTTCCAAG 3046018 30 100.0 36 .............................. AAATTACTATTGACAGTATAAAAATATATGATACAA 3046084 30 100.0 36 .............................. ACTATTACAAAGGCAAAATTGCTTAGAAATGAGGAG 3046150 30 100.0 36 .............................. GCATTTGAACATATCATGACCTTCCCCGAGGCAGAA 3046216 30 100.0 40 .............................. TCCCTGATTTCAATTCTGCCGATAAGTTCAAATCCAGCCC 3046286 30 100.0 38 .............................. ACTCTTCTTCCATCCGAATAGGTAATACAGTCAATTCG 3046354 30 100.0 38 .............................. TTTGTCAGTCTGATTTTGATGTTCAAACTGTATTCCCC 3046422 30 100.0 36 .............................. CACACGCTTTCCAATCCTTGATTGGTTTTCTTGCCT 3046488 30 100.0 38 .............................. CGCTGATATGTGCTGCGACGGCTCATATGTATATGCAG 3046556 30 100.0 37 .............................. TTTTGACTGGTCCAGGTTCCACCCATATTATCACTCC 3046623 30 100.0 36 .............................. TACCTGATTTTGCAGTATGCGGTAGTCACTATTTCG 3046689 30 100.0 36 .............................. TAGTGTCAATGTTCTTCCAAACTTCTTCAGGGAGGT 3046755 30 100.0 36 .............................. AGTATTTCCTGCAAGGCTTCTTCTGCATCTACTATA 3046821 30 100.0 36 .............................. TAAGCATCATGATGGATAAGGTCGGTACCTTCCCGA 3046887 30 100.0 38 .............................. AAGCAGTTTGCCAAATCCTATCACTAAGTTGAGTCACA 3046955 30 100.0 36 .............................. TGCTAATTAGCTCGTTGCCGCATAGCGCAATTATCA 3047021 30 100.0 38 .............................. TATGTTCACATGGGATACATCGGTATATCCGTGGGTTC 3047089 30 100.0 37 .............................. TAGATGAATCAAATAGTTCTACTGAACTTGGAGATAC 3047156 30 100.0 36 .............................. TTTCTTTTTCTTGCCATATCCTGGCAATTTCTATAC 3047222 30 100.0 41 .............................. ACAAATAATTTTACTATGCGCCAAGTAATTGGATATATCGC 3047293 30 100.0 36 .............................. ACCTCCCGGACAAAAACTTATCCGGCGACGGGCCGA 3047359 30 100.0 38 .............................. TGGTGTCAGAACATCCCGGGAATTCGGTTTGAAGATTC 3047427 30 100.0 37 .............................. TGGCGCCTTGGGCGCCTGTAACCATAATTTCGCAGGA 3047494 30 100.0 36 .............................. TCCACCACTGTCCAGAGTAAAAAAAAGTAGAACAGA 3047560 30 100.0 36 .............................. CGGCAATCTTCTGTCGCAGTTGGCTGTTACGCGGAA 3047626 30 100.0 38 .............................. ATCCGACAGTGAAAACATTCACTTTTGATTTATATGAA 3047694 30 100.0 36 .............................. TTGTTCAGCCTCCTTTCTAAGCAATGTAATAATAAA 3047760 30 100.0 38 .............................. ATCCGACAGTGAAAACATTCACTTTTGATTTATATGAA 3047828 30 100.0 38 .............................. GCATTGGACTGATTCTGCATATCGCTATCAACTCCTTT 3047896 30 100.0 37 .............................. AATTGTGGGATAGCACCGGCCTGATCAACCGGTGCGA 3047963 30 100.0 37 .............................. GCCTGCCACTGCTCCCATCTGAAACCTTCCTCCTCTT 3048030 30 100.0 37 .............................. GCTTTTAGCTTACTTTCTAATACGTAGCCATAATTCC 3048097 30 100.0 36 .............................. TTCCGCCGTTGCCTCGCTTCCGTCCGGAGCTGGCGG 3048163 30 100.0 36 .............................. CCGCCCCCGGAATGGGCTTGGGTGTGTCATAAGTAA 3048229 30 100.0 38 .............................. ATTCCAGCGATTCGGCCATCGATATGAGCGCCAGGTTG 3048297 30 100.0 37 .............................. GGCTTTCCTGCCAAAGTTGTTCCTGCTTCTGCGAAGC 3048364 30 100.0 37 .............................. CCACCTGCAGAGTTAGAACCATTTATACGCAGAAAGG 3048431 30 100.0 37 .............................. TATTCTGACACATCAATTTGCTTGAGTTCAGTGATTT 3048498 30 100.0 37 .............................. TCAACGAGAACGATGTCATCAACAATGTGCGGGCCAG 3048565 30 100.0 36 .............................. GCAGTTTCTGATACGTTTCATTGCTGGTCCGAACCG 3048631 30 100.0 37 .............................. TTTCAAACCTTACAACTTGTTGCATAACAAATTCTCC 3048698 30 100.0 38 .............................. TCTATCGATGCGAGTTCTTCATGCCGTAGTTCCAATGA 3048766 30 100.0 36 .............................. AAACAAATTGCAATTATAAAAAAATAGGGAATCACA 3048832 30 100.0 35 .............................. TGCGATCAAGTACACTGTTAAGACTATCAGGCTTC 3048897 30 100.0 36 .............................. AAATAAATTTGTCGCTGCCTGAGCCAATTTCAACAC 3048963 30 100.0 38 .............................. AAGATTTCATTTTTGCAATACCTTATGAAACATTTGGT 3049031 30 100.0 36 .............................. ATCTAACAGTCCAGCTGCCTTGAGGTCGCTTATTTT 3049097 30 100.0 38 .............................. GGGACGTCAACACTCCGAAAGGCGGCTAGAAGTGGACG 3049165 30 100.0 36 .............................. GCCATATATACACCCCCTACAAGTAGCTTGGAGCAA 3049231 30 100.0 35 .............................. AGCTTGTCCGCAGGCTTTTCTTCCTTGGGCTCTTC 3049296 30 100.0 36 .............................. CATTTCCATCAACCTTAATAAGCACGTCTTCAGGTA 3049362 30 100.0 35 .............................. TTGTCAACTAAGCATGCGAACTGCTCCGAGCCATT 3049427 30 100.0 37 .............................. CCCAAAACATATTCATCCAAGTTATTCGTGCAGTTTA 3049494 30 100.0 36 .............................. GCTGTAGTTACTTCTGTCCCGTTTTCTCTAATACTA 3049560 30 100.0 38 .............................. CCGTTTTCATCCTTGAACCTATCAGATACTACAAACTC 3049628 30 100.0 37 .............................. AATCCAATAGTAGTGCTAATAGTTCCCCATCCTCCGT 3049695 30 100.0 39 .............................. ACATACAAAGGTATATCCCATCTTTTTCACTGTTTCAAA 3049764 30 100.0 36 .............................. CAGACGACAGCTTTTTACCTATCCTTTATGAGCTGG 3049830 30 100.0 43 .............................. TCGTACTGTAGACGGTGAAATACAAATCATTCCTGAGTTTTTA 3049903 30 100.0 36 .............................. CGCAGTAGTCTGCTGTCAGTTCTATCCCTGCTGCGG 3049969 30 100.0 37 .............................. ATTTATAAAGGAGAGATTATGTGGCAAAGATAACAGA 3050036 30 100.0 41 .............................. TGACAAAGTAAAAGCAATAGCTGATGAGCGTAACTTAACTA 3050107 30 100.0 37 .............................. GTGAGTACTTGTGAACAATCACGAGTTTCTCAGGTGT 3050174 30 100.0 37 .............................. GTGAATTCCGATGCTGTTTCCCTTTCGGGTAAGTTTT 3050241 30 93.3 0 ...........G.............A.... | ========== ====== ====== ====== ============================== =========================================== ================== 81 30 99.9 37 GTTTTTATCGTACCTATGAGGAATTGAAAC # Left flank : CCCCTTTGCAAAAGTTGGAGCCGCTTGTGTGTAAGTTTTGGGCATTGAAAGAAATGTGACAGACAGGATGAGGATAAAGATAACAGTAAGTTTTGTAATTTTCGATAACATAGAGCCCCCCTATATTTACATCTTTTGATTTTTGGATTATCATATGTACAAATTTATTGTATCATAAATTGGAGGTTCTATAAATTGTATGTAATATAAACAAAAGAAATAATTATTTGATTGTGTGACTGTATTTAGATGCTGTTGGCTCATAAGTTCCTATTGATATCAAGTATTCAAACTTTCTGCCTGGAGATTTTGCTGTTGTACATGGTTTTTATGTTCGTCGATGTGGAGTAGTGCAAAAAAGCCGGGGGATCGACAAAATTTATTAATGTGCCTCAAATGCTGATTTATAGGTCTCTTGAGAGAGTTTTTTTGTTCTGATTGTTGATTTTTGTTTTATATAGAGTTAAAATATAAAGCAGAAGTTTAGCGAGTTCTATGGG # Right flank : CACAATAGATACCGTCCCCGTGCTAATTTCATCATAGTTTTGTTGTGCCTATAATATAAATTGAAATTAATGCAAATATTGACATATCCTATAACTATTTATTTTTTCATGCCTATAAACTAAATCAATAACATTATAGGTACTCCGAAAAAAAATCTATTGACTTTTTGATATCCCAATGTTATCCTCACATTAGCCCAAAAAATCTTTGAAAGAAGGTGCTCCAACATTTACGCTCTTTTTATAGTGTTAAACGAAGTTGATTATCTTGATGATATTCTGGCCAAATTTGTTGACGTGGGAGTAAGCGGTGCAACAATTTTGCACAGCCAGGGAATGGCAAGCGCCATCGTCAACAGTGAAAATAACAAAATCTCACTCTTTAGCGCTTTAAAAAGCATTATAGAAAATATTCGTCCATATAACAAAACCATCTTTACAGTTTTGGAAAGCGAAGAATTGGTGGAAAAAGCCGTATCCGCCGTTCAAAGTGTGATAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 3147762-3147575 **** Predicted by CRISPRDetect 2.4 *** >NZ_OCMV01000002.1 Acetivibrio thermocellus strain LQRI, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3147761 37 100.0 38 ..................................... CCAAAATCAGGCCGTGCATGGGTGAACCAGGAAGCAAA 3147686 37 97.3 38 ...............T..................... ATACATAACAGAATTCGCCTCCCAATTTATCATTATAG 3147611 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ====================================== ================== 3 37 98.2 38 GTTGAAGAGGTACTTCCAGTAAAACAAGGATTGAAAC # Left flank : CGGTAAAGAGATTGACAGTATAAATAGATTGAGAAACAAAGTTGAGGCAAGAAATAATAGTATTTTTGCTCATGGTTATGAATTTATTAGTAAAGAAAAGTATAATGAATTTAAAAAAGTGGTTGAAGATTATATGAACTTGTTGTGTTCTATAGAAGGAATAGATAAAGAAGAACTGTTTGATTCATGCGAGTTTATAAAGCTATAGCCGAGAGTTAATATGATTAAAGAATAAGGTGTTGAAATTAAAACCAGATTATGTTATGTTTTAATTAAAGTGATAAGTAACATTTTACAAAATGTGGATACAAAATTATTGAGAATTTTGAGTTCATGTTCGTTAAAGCCTTGGAAATAGTGGTATGGAAGCTTATGTTGATAGCAAAAAATTGAATGAAAAATGGTGGATTTTAGGAGAATTTTGATAAAATATGACCAAAAAAGTTCAGTCAAAAAAATCTTGTAAGCATTGACATTTAAGCAATATCACCTCGAGGACT # Right flank : ATATGAGACTCTATTTCAAGCCTTACAGAATCAGAACTTCCACCAATCCATTTTCTGTGCCGTTAAAACAAACCTTGTAAGGAGGTGCCAAATGAAGCTGATTCTGAATACACCCGGACTTTACCTTTGTAAAAGGGAGAGTGCTTTCAGATTCAAAGCGAGAATGAAAAACGGGAAATAGCTGCAACTAAAGTTGACCAAATAATGATAACCATTCATGCAGCTCTTACAACTGATGCAATTGAACTGGCCCTTGAATACAATATTGACATAATATTTTTAAAAAACACGGGACAACCAATGGGGCGTGTATGGCATTCAAAACTTGGAAGTATCAGTACAATTAGAAGAAAACAATTATTCCTCCAGGATAGCCCGCTTGGGCTTCAACTTGTAAAAGAATGGATCTTGGAGAAAATGGATAATCAAATACGGCTGTTAAAGAAACTGGAAGTTAACCGCAGAGATGATGAAAAACGTGCTATAATCAGGGATACCAT # Questionable array : NO Score: 8.58 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGAGGTACTTCCAGTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: R [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //