Array 1 29063-27537 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLBY02000024.1 Salmonella enterica subsp. enterica serovar Hartford strain CFSAN051031 CFSAN051031_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 29062 29 100.0 32 ............................. CGAGCGCCGGAGTTGATTAGTGGTGCCGGGGA 29001 29 100.0 33 ............................. CTGATCGCCGGATACGTCGCGAGCGACATCGAG 28939 29 100.0 32 ............................. CCCTTGAAGCGGCTCAATTTCACCATGACGCA 28878 29 100.0 32 ............................. TAGCCGCGGCTCACCGTCTTTCGGTTCAGGCC 28817 29 100.0 32 ............................. CGGGCCGTCTTTCAGCGTCTTCCACTCGCCGC 28756 29 100.0 32 ............................. CGTTATAAGGCGGTAACAGCGAAAACGTATGA 28695 29 100.0 32 ............................. GCTCCCGACTCCTGAATGAAGGTGTCGATTAT 28634 29 100.0 32 ............................. TCGCCTTTTCCAGTCGCCTGCACGCTATATCA 28573 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 28512 29 100.0 32 ............................. TTTAAATAGTGGGGTGATCCCGGTGAAAATCC 28451 29 100.0 32 ............................. GTTCAATTCGGTTTCCACTTCCCGCTACATCG 28390 29 100.0 32 ............................. ATTATCTCTCACTTGCTTCAATAAGCCCCCGC 28329 29 100.0 32 ............................. GCGTTGTTGTTATTCGCCAGACCAAGATTCCA 28268 29 100.0 63 ............................. TTGGCGTGCGGCGAGGTCATCAGATAAACCGTCGGCAGCTACTTCAGTGTTAGGCGGCATCCA 28176 29 100.0 32 ............................. CCACGGCGCAGGAAATCTCCTTTGTAACAGGG 28115 29 96.6 32 .G........................... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 28054 29 96.6 32 .............C............... TACCTGCCGCTACCGCGCTGGACTGCGCCGCC 27993 29 96.6 32 .............C............... TGTAATCTCTCTATTTATAATCTGTATTGTAC 27932 29 96.6 32 .............C............... CAACTGGTGATACGGTTATGTCTCGTATCGCA 27871 29 96.6 32 .............C............... GTGATCGAGTATTGCTCGTTGTCGGCGTGGGC 27810 29 96.6 32 .............C............... AGTAATCAACTCAATGCGCTCACAACGCAATG 27749 29 96.6 32 .............C............... CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 27688 29 93.1 32 ............TC............... TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 27627 29 96.6 32 .............C............... AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 27566 29 89.7 0 A...........TC............... | A [27539] ========== ====== ====== ====== ============================= =============================================================== ================== 25 29 98.2 33 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 149855-150614 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLBY02000014.1 Salmonella enterica subsp. enterica serovar Hartford strain CFSAN051031 CFSAN051031_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 149855 29 100.0 32 ............................. AGCACTTCACCGGATCGCTGGTTGTGCCGGTG 149916 29 100.0 32 ............................. GAAAAGAAGAAATAATGAGATTTGCCCCGGAA 149977 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 150038 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 150099 29 100.0 32 ............................. AATATCTATAACGGAGCCGTTTTCATTGAGCG 150160 29 100.0 32 ............................. TGGATATTCATTGAGCGCTGGAAATTCAAAAA 150221 29 100.0 32 ............................. ACAACAACATATTGGTAAATCAGGATACTGGC 150282 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 150343 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 150404 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 150465 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 150526 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 150587 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGCGATTATCCTCTATCCTTTAAAATAGCCGTCGTTGAGCAGGTCGA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //