Array 1 9850-9997 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADANE010000023.1 Staphylococcus argenteus strain PHL2420 contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ===================================== ================== 9850 27 100.0 37 ........................... GTTGATGCGCAGCATCCAACTGTGTTCCTCTTATTCT 9914 27 100.0 30 ........................... TGCGCTTAGCGCAGGCGCTCCTACTTTTCA 9971 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ===================================== ================== 3 27 100.0 34 ACTTTAGTTGTTAGGGGCTCTTATGCA # Left flank : CAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTATCAAATTTTTCATTGGAATTCTCTTATTAAACTTAATTACTATTTTATTTAAAGTACCTGTTGGTTACTTGATTACATTAAATACGCAATCACTCTCTCAAAATGTTGCAGAAAATATCATAAAAGTTTATACAGTACTAACAATCATTTTATTTGTTGTTATTCATGCAATCATTTTAATGGGTATCGTGCAATATTACTTAAAACGTGGTCAAAAAATTACTAAAGATAAAGTAAAATCAGCTGACAAAAACAAAAATGTCGTGACTGAACCAAAAAGTACAAAAGTAGAAAATGAAAAAGTGACAACATCTGTTGAAACAAAAACAGAAAAAGCACAAGATTCATTAAAAGATGAGACTACAAAAACGATTACTTCAGATAAACCAGAAGACAATCAACCAAAATAAAATTTAGAGCCCCTTACA # Right flank : AGTTGATGCGCAGCATCCAACTGTGTTCCTCTTATTCTACTTTAGCTGGTTAGGAACTCCTTTCTAAAATAACTAAGTGCATTGTCTATACATAGTTGGGCAAATTCTATTAGAATAAATATTGTTAAACAGCGACCTCATTAATTAAACGAGAAACTTTAGAAACTGATTAGGAGTAACTACTATAACCATAGGCATCACCTCTTTATTAAGAGATTAGCCACCATCTATTCAAATTGCCCTATAAATATTTGAACATGAACATGTTTAAATATTTATAGTATAAGGTTTTTCATTTCGTTAACAACTCGATAAACAAGGGATAGAATGGTTGTCAGACACTGAATTACGGAATTATTTATTTGTTACAGATGATAAAGATAAACAATAGTACAAACATGATAAAATTGTGCATGTCTAAACAATCAAAAATGTACATTATTAAATTATCATTTCCATTCAACTAAGTGTAGACGATTCAAATAGTGTTAGTGTTGGTT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTTTAGTTGTTAGGGGCTCTTATGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 8883-9283 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADANE010000024.1 Staphylococcus argenteus strain PHL2420 contig_83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 8883 36 100.0 35 .................................... CTATAATAGTTACTGCTTTTGTAACCGTCCATATC 8954 36 100.0 40 .................................... AAATGCTTATCCATTCTAATCATATTTTCAATTTGTTTAT 9030 36 100.0 36 .................................... TGCCCACTTAATTAATTCATCTAGTCTCATTTCTTT 9102 36 100.0 38 .................................... CATCAACTGACTTTTTAACTGTTTTAGTGAATTCGTCT 9176 36 97.2 36 ......................A............. TTAAAGATCTCAACAATAGCGTCCCATATTTTCTGT 9248 36 86.1 0 .........A.......G....C.....G...A... | ========== ====== ====== ====== ==================================== ======================================== ================== 6 36 97.2 37 ATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC # Left flank : TAAGAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTAGAAAAGAATATCAATATTGTTGACTATAAATTGAAAAGCACACGGTTTAACTTAGAAAAAGTTAAAATTCCTTCATTTACAGGAGAAATAGTGTTTAAAATTAAAGGACCATTACCTTTTCTACAATTAACTCATTTTTTATTGAAGTTTGGTGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAATATAGCTGAAATTTAATTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCACTATTTTTGACAGCAAATTTTATATTTGAACTATTGATTTAATAGGCTTTAAAGAGCTATCT # Right flank : CCTCATCTTGATGATCCCAATTGGCCTGGTTAAAAAGAAATCGATAACCTTTCGTAGAATAGAGAATAAGTATTAAAAATATATTTGGTTTGATAAAATATTCTGCAAAAAAGGGGACAAAAAAATCAAGATTTAAACTGTAATTCATTATCTTTGAAATTAATTGACATTCAATTTCTAAATAAGCAGAGACAAAAATAACTTTCATACAAATAATTTCTTTGTGATTAAGTTGGAATTAGAAAACTAATACTAAACGAATGGAATGTATATTATTGAGGAATTGGATGCAGTGTGGTGCAATTTCGAGAACTACTACTTAAGAAAATAAACAATAAGAATTAAATCTGAGTCAAGATATAAAAACAAATATTTTTACCATAACTATATTAGTAAATACTTTATTATTTAGTATACGGATGAAAGCGAAGTGACAGCTAGCAATGCTCCAGATATAGGTATTAGTATTATAAAAGAGCAAGATTACCATTTAGAAAATG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], //