Array 1 1199408-1200011 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134363.1 Actinomyces slackii strain NCTC11923 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1199408 37 100.0 33 ..................................... GATGGTGATGGTCATCGTCCTGGTCCTTTCTGG 1199478 37 100.0 36 ..................................... CGACCCCCATGGTCGCCTCCTTCCTCTCAAGCTCTC 1199551 37 100.0 34 ..................................... ACTCCAACTCGTAGGAGTAGTAGAGATTGAGGTC 1199622 37 100.0 35 ..................................... CCTCGTCTGGATGGGGCTGCTCCCACCCAGTTCTA 1199694 37 100.0 36 ..................................... AATTAGCTGGGTTTGCCATGGTGTTTCTCCTTGTTG 1199767 37 100.0 34 ..................................... TCCATCTAGCGGCATCAAGTGCATCCTCGGTCTC 1199838 37 94.6 29 .............G..................A.... GTGATGCCTGCCCCCTGGGTGAGGCGGCG 1199904 37 97.3 34 .C................................... CTGGGATCTCTAGGATCCAGCTGCGCCCATCAGA 1199975 37 97.3 0 .................................C... | ========== ====== ====== ====== ===================================== ==================================== ================== 9 37 98.8 34 GTCAGAAGGCACCACGCGCCATAAGGTGCATTGAGAC # Left flank : CGACCGTTCCTTCTCGATCACCTCGCGCACCACTTGTTCCTTGAACTCATCAGAGTACTTTGCCCTTGACATGGCTCCATCCTATCGAATCAAAGGAGGATGAAAATCCTCCCCTGTCCGAGAAACACCACTCACCCCAGCCTGTGCCGATCCTGCCGTGATCGGGTGCAGATCTTGGGCACGCCGCCCAGTCAGGATGACGGCGAGCTCTACCGGGGCCTGTTCTGACGCGCGGCGAGGGTGGGGTGGGGAGTCGGTGGGGCGTGGTCCTGGAGGGTGAGGGGTTGTCTGATGTCGAGTGGTGCGTGGGCAGTTTTCCGCAAGACGTCGTTGAAAGCCGGGTGGCGGGGGCCTGTGGAGCGCGTCGCTGGCGCTGTGGCGCTGACCTGCGCGAATGTGGTAGAACAGTGCTGGTGCCGAGGCGGTTTGACGGGTGTCTGAGAGCCGCTGGCGCTACTCGTCGCATCGTCCCTGGTCACAGGGGGTGGATCGGGGGGTGG # Right flank : CGGTCTCAGCGCCTTTGTCCTTGCATATCTGTGGACACCCGCCGCGGGTGACTGGCCCCGACGACGGTGAAGGACCGTGACGCTCCTGCGGTGCTGCGACTGGGGAGGCCAGTCGCGTGGTATCGAAGTGGTATCATCGCGTCATGGCGATGACTCTGCGGTTAACCAAGGATGATGAGGAGATTCTCGCCCGTATCGCGCAGGAGGACGGCATCAGCCGCCAGGAGGCCACGGTGCGGGCCATTCGCGAGACTGCGGCGCGGCGCGCGCACGAGCGGAGGGTCGCAGACGCCTCAGCGCGTGTACGAGATCGTTACGGTCATCTCCTTGAGCGGCTTGGACGGTGACCGAGTACCTCTCGCTTGAGGACCTGCTGAGTCTCGTCAACGACCTGGGTGTCGGGCCGGTGCGTGATCTGGGCCTCCTCGAGTCCGCAGCCTGTCGCCCCGCGACGACGCTCCTTGGGAAGGACGCCTACCCGTCGCTGGCCCACAAGGCGG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAGGCACCACGCGCCATAAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 1201943-1202398 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134363.1 Actinomyces slackii strain NCTC11923 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================= ================== 1201943 32 100.0 41 ................................ GAGACATTAGAAAGATCGCCGCCAGCAAGTCATAGCTGGCG 1202016 32 100.0 38 ................................ GAGACCCTCGACCGTGGTCCTCGGGTTGTCTTCAAAGG 1202086 32 100.0 36 ................................ GAGACGTTCACGTGAGGTTGAGGTGGTGCTGGGCGT 1202154 32 96.9 37 ........A....................... AAGACGCGGGCGTTGCGAACGCTTGCCCTAACATCAA 1202223 32 100.0 40 ................................ AAGACGTGTGGACGAGGTTCCAGGACCACCCGTAGTACTC 1202295 32 93.8 40 ..........G..G.................. GAGACACGCCCATCCAAGGGAAGAAGTCCCAATCCGGTAC 1202367 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ========================================= ================== 7 32 98.7 39 GTCAGAAGGCACCACGCGCCATAAGGTGCATT # Left flank : TTCAGTTCGTGGGTCTGGGGTGGGATCCGCGTGATTCCGCACTGGTTCGTGTCTGACGGTACCGCTACAGTGAGGTTTTCTCGTCAGGGTTGATGAGAAAGGCCCATCGAGAGTTCTGATGATGTCGTGCATGTCTATCGTCTGTGTCGATCCTGTCGCGATCGGGTGCAGGTCCTGGGCGTGCCGCCCAGTCAGGATGACGGCGAGCTGTACCGGGGTCTGTTCTGATGTGTGGTGAGGGTGGGGCGGGGAGTCGGTGGGGCGTGGTCCTGGAGGGCGAGGGGTTGTCTGATGTCGAGTGGTGCGTGGGCACTTTTCCGCAAGAGGTCGTTGAAAGCCGGGTGGCGGGGGCTTGAGAAGCGCGTCGCTGGCGCTGTGGCGCTGACCTGCGCGGATGTGGTAGAACTGCCTTGGTGCCGAGGCGGTTCGACAGGTGCCTGAGAGCCGCTGGCGCTACTCGTCGCATCGTCCCTGGTCACAGGGGGTGGATCGAGGGGTGG # Right flank : TGAGTAAGAAGGCGTCGTGTAGCAAATGGTGCAGTTTGGCTGTTTCGAACACGTTGTCAGGATGTCGGGGCGCCCAGCATTCATCCAAAGGTGCTTGCGATCGATTTGGATCAACCCATAAGAATTGCGCTCATTTAAGTTGACTCTTCACGATCAGACGTGTCGCATTCTCTCGGTCAAACGTGCTCTGACCTGCGCGTTTGTTGAGTAGCGGCATGGCTTTCCTCAAAAGGTATCGCCGCTCGTCCACTTGTGCTAGGTTGCCGTCGTTCCAGACGCCAAAGAAGGTAACCATGTACCTCGTCATGCTCGAGACCGGCGGCAATCAGCGCTACGTCTTCTCCTCGCCGCGCCAGCGCGAGAACATCGGCGGCTCCTTCCTGCTGACGATGCTCGCCCCATGGACGCACGAGATCGCCGCAGCCCTGAACATCACCACCACCCGCGTCTCAGACTCCTCCGGCAAAACCATCCTCACCGTCCCCGATCAGGACTCCGCC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAGGCACCACGCGCCATAAGGTGCATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 3 1638642-1634139 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134363.1 Actinomyces slackii strain NCTC11923 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================== ================== 1638641 29 96.6 32 A............................ GGCCTCTCGCGCGTGTGCGCGTGCGCGTGCAG 1638580 29 96.6 32 ............................G GCGTGGAGGAGGGGGGTCTGATGCTGACAGCA 1638519 29 96.6 33 ............................A CAAGCGTTCGATGGCGAGCGTCACACAAATCCG 1638457 29 100.0 32 ............................. CCAAACCCAAAACCAAAACCAAAAACGAGACC 1638396 29 100.0 32 ............................. TACCCACGAACACATGTTCACACCAATCAAAC 1638335 29 100.0 32 ............................. GGGGGCATCTAGTGCCGCCCGGTCCCCGCGCA 1638274 29 100.0 32 ............................. GCGTCACACCCCAGTCACCCCAACGAAAAGTC 1638213 29 100.0 32 ............................. TCGCCCCGCTGGTCCAGGCCCCAGATGAGGTC 1638152 29 96.6 32 ............................G CGCACCAGTGTGAAGAAAGAGTACCTGATCAA 1638091 29 100.0 32 ............................. GGCCTCTCGCGCGCGCGCGTGTGCGTGTGGGC 1638030 29 100.0 32 ............................. CAAGCTCCGCTGCGGATCTCTACCCGGTCACC 1637969 29 96.6 32 ............................G GTGACGTTGATGATGTTGTCGATCAGGCTGTT 1637908 29 96.6 32 ............................G CAACTGGTTAGCAGCCCGATCATCTACCGCTG 1637847 29 100.0 32 ............................. ACGGGCAGGGAAGCGCAGGGCATCCGGCACAG 1637786 29 96.6 32 ............................G AACAGGACGTCCCCGGGGCGAAGCCCCTGAGT 1637725 29 100.0 32 ............................. CTCAGCCTCAATCAGGGCCGCCAGTGCCGCTT 1637664 29 96.6 32 ............................G TACTTCGCCCGGATCGACCAGTTCGTGTGCTT 1637603 29 100.0 32 ............................. CGGCAGCCCTCCACTGGGCAGCAAGCCAGTCC 1637542 29 96.6 32 ............................G TCCCAGGAAATCCCTTAGGCCACCCTTACCTC 1637481 29 96.6 32 ............................T CCACTTAGGCAAGCCTCACCTCTAGGACCAAG 1637420 29 96.6 32 ............................T GCTGCTTGGTCACCCCAGTAGGTGAGGGCCAC 1637359 29 96.6 32 ............................G GAACCGGCGCCATTGCTCACCAGGATGCTCCC 1637298 29 100.0 32 ............................. CGGGGGGGGATCTCAGGCCGTCAGGATCGCGT 1637237 29 96.6 32 ............................G CAATCAGACAGGGCACCCAGTGGATGGGTGCA 1637176 29 96.6 33 ............................A CCACGCGAATGAGAATCGTTCTCACCCGAGGGG 1637114 29 100.0 32 ............................. CGGGGCTGGGCTGCACTGATAGGCGGGCGGGC 1637053 29 100.0 32 ............................. GTCCCAAACGCCCCCTGTCTACTCCATCACAC 1636992 29 96.6 33 ............................G CCACATCCACGCCGCACGCATCCACCGCACCTG 1636930 29 96.6 32 ............................G ACCCAAACACCCCCTGTCAAACGCATCACACC 1636869 29 96.6 32 ............................G TCCCAGAGATTCAGTTAGGGCACCCTCACCTC 1636808 29 96.6 32 ............................A TGCTCAGCACTGAGGCATTCCCCCCATCCCGG 1636747 29 100.0 32 ............................. ATGCGGTCTGTCACGTCCCCCTGGTACAGGTA 1636686 29 96.6 32 ............................T CTGCCGTCATCTCGGCGACCCACGGGTCAACC 1636625 29 100.0 32 ............................. TGGTGGCCTTTGAGTCGGCCCTCCAGGGTCAC 1636564 29 96.6 32 ............................G GATCACGGCCCCCGGGCTTGACCCGGGGGCCG 1636503 29 100.0 32 ............................. GATTGGGTCAGCACTGACTGTGATCCGACGGG 1636442 29 100.0 32 ............................. CGGTGTCCGTGTAGACCTCATAACTCTCTGCG 1636381 29 96.6 32 ............................G CACCACAACCACTCCGCTTGACACTCACCACC 1636320 29 96.6 32 ............................T AACAAGTACATAACGCACCACCGAGTCCTGCC 1636259 29 100.0 32 ............................. CGCACGCTCTAGTGGGTACAGGACGGCCACGT 1636198 29 96.6 32 ............................G CCTTCACATCGATTGGCATGACCGCGGCGATG 1636137 29 96.6 32 ............................T CTTCAGCGTGTCCAGGTTGGACTGGAGAGCGA 1636076 29 96.6 32 ............................G AGCGCAGTGCGTATCCGCAGCGGTCTCGGCGA 1636015 29 100.0 32 ............................. TTGCGCCGCGGCCGGGGTTGGTGTCCTATATA 1635954 29 96.6 32 ............................G ATCTCACTGCCGGGGGAGTGCACGATGCGGGC 1635893 29 100.0 32 ............................. TCCCGGACCGTCACCTTGACGGCGTTGGCGAC 1635832 29 96.6 32 ............................G TCGGGATGGTCGAGGCGCTCGGCGAGGCGCCG 1635771 29 96.6 32 ............................G CCGGAGATGCCCGCGGTGATCTCGTTGATTTT 1635710 29 96.6 32 ............................G CACACCCTGGCCGCCATCTGCAAGGTCACACA 1635649 29 96.6 32 ............................G GAGGAGCGCAAGGCGATCAAGACCATCCGCAC 1635588 29 96.6 32 ............................G CGCCCTTGATGATCAGCCTGATCGGCTAGCGC 1635527 29 96.6 32 ............................G CCCGCGTCCAAGCGGAAGTCCTCATGGGCGTC 1635466 29 96.6 32 ............................G GCGGAGCCGACGGCGGTCCGCAGCGTCTCGCT 1635405 29 96.6 32 ............................G AGCCGTGGCCGGTGATACGTGCCGCCAACACC 1635344 29 100.0 32 ............................. GGTGGAGGGGGCACTCCGGGGCGTCGTGCTCG 1635283 29 100.0 32 ............................. GACGGACCTGTGCTTGTCGTGGCTCCGCTGCG 1635222 29 100.0 32 ............................. ACCAACCCAGAAGGGAACAGAAATGTTCAGCG 1635161 29 93.1 32 ....C.......................G TCATGCGGTCAATCTCGTCGCTGAACATTTCT 1635100 29 96.6 34 ............................A TTGCGGCGCGGACTCTACGGGGTACCGCGCCCGT 1635037 29 96.6 32 ............................G GTCACGCCAGTGATGTGCTTGTCGCTGTCGTC 1634976 29 96.6 32 ........T.................... AGGCAAGACACCACAAGGTCGTCATCCACGGC 1634915 29 100.0 32 ............................. CCATTGATACTGCTGATCATCGACCACATGTA 1634854 29 96.6 33 ............................T ATGAGACTCGCGTACAGGATCATCGCTGGGATC 1634792 29 96.6 32 ............................T GTGTTCTACCCGGATCTGAACCGTTACTGGGT 1634731 29 100.0 32 ............................. GGCCTCTCGCGCGTGGGCGCGCGTGTGCGGGC 1634670 29 93.1 32 .............C..............G GGCGGGGTCGGCAAGACCTCAACGACCCTGGC 1634609 29 100.0 32 ............................. AAGTTCACCATCGGCCAAGGCGCCAGCCCCGA 1634548 29 96.6 32 .............C............... CTGGGGACGGCGATCAACGCCGTCGTCCCGGC 1634487 29 100.0 32 ............................. TACCTCAAGCAGTTGCAGCTTGGCATCAAGCG 1634426 29 100.0 32 ............................. AAGCCTGCGTTGGCACTGGATTTGATGGAGGA 1634365 29 89.7 14 .............C.........A....G CATGGCGGCAAGCA Deletion [1634323] 1634322 29 89.7 126 ....G......A.............C... GGGGCTCGGATGACGCCAATCTCTCTGCGGCAGGCATGAGTCGGGTCCAGGACTGCCCCACCGAGAATCGATGGTGTCTTCTGGACCCAACCGCCACGGTACACCGATCCGACTACCAGTGCCAGA 1634167 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================================================================================================== ================== 73 29 97.7 33 GTAAACCCCGCGCACGCGGGGATGATCCC # Left flank : GCTGAGACCCGCCGCATGTGGTTGCCCCAGGGTAAACGAACGAAGATCTACGTGGACCGCACCCGCAACGCCTGCTCCTTCTTCGGCGCACTGTCCCTGAGATCCAAGAAGGTCAAGGTCTACCCCATCGAGGGCAACCAGAACACCGAGAAGATCCTCTCCTGCCTGACTCGCCTGGTGCGCGAGACCGATAACGACAAGATCGCCGTGGTTCTCGACAATGCCGGGTTCCACCACGCCAAAGCGCTAAGAGAGCAGCTTCAGCCCGGAGGCCGGCTCGAGAGCCTCAGGCTCATCTACCTGCCGCCCTACGCACCCGACCACAATCCGGTCGAGCACGTCTGGAACACCGCCAAAGGCACAATCGCGAACATCCAGAGAGACACCCCCGAGGAGACCTACACCGCATTCATGGGCTACATCAACACCCGCACCTTCGACTACGACTTCGAACACCTCCCAAACATCACGCCAGCACACGATCTTGTTTAATTCTGGCC # Right flank : AGGCCAGCGGTAGGCTCGGCGATCATGCGGGCGTAAGCCCGCGCACGCGGATGATCCAAGCTGATCAGCGGGCAAGGTCGCTGGACCTTCCTCGCCAGGGGCAGGAAGGATCACTGAGTCCTGAGCTGAGGGCGGCGGCACGGATGTCGTCGAGCGGCACCGACGCGTTTGTCCACCGTGAACAACTTTAAGACTTTCCGCCACTTACCGCAATAGTAAACGCGCAGGTCAGAGCATATTTCCAGTGCAGGACCTGCGAGCGGAGCTAGGTAAAGTTGTTCACGGTGGACAAAACTGGCGCGGATCACCGGCCGGTCCGCTGCCAGCGGGCCGATGCCAGGACGACATACTGAGCATGGCCGCACTCCCCCGGATCAATCATCTAGGCTTCTCACCCGGGCCGCGCCCTGCGCCGTCGGCCCTGAGCCGCTGCCCATCACCCCCAAGGAACCCTCATGCGCGTCCTGGCCGCCCTGTCCGGCGGCGTCGACTCCGCGGTC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.12, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1643517-1639827 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134363.1 Actinomyces slackii strain NCTC11923 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1643516 29 100.0 32 ............................. TTCGCCGTAGTGGGGGTGGTTCATGACGGGTT 1643455 29 96.6 32 ............................G CGGTCCGCCGCTCGGTGGGGACCTCGTTGCGC 1643394 29 96.6 32 ............................G CGGCTGATGGCGACGCGCTTCCTGTGCGATCC 1643333 29 100.0 32 ............................. CCATGGACAACCCCAATCAAACCCATCACAAC 1643272 29 96.6 32 ............................G CCCATTGAGATTCAGGGGGCTGAGAGTCGAGT 1643211 29 96.6 32 ............................G CCGAGACCTATTGAGGCGATACCCCCGGCGTG 1643150 29 96.6 32 ............................G GTTCAGGCCCCCACCGATCTTCGCCGGCCACG 1643089 29 96.6 32 ............................G TGCAAGTTCTTGTGCGTGCACCCGTCCACTGG 1643028 29 100.0 32 ............................. AGCCTTGCGCTCATGATGCAGGAGATCGCGCA 1642967 29 96.6 32 ............................G CCCGCCTCCCGCAGCACGTGCAGAACCAGGGA 1642906 29 96.6 32 ............................G CCGGATTTGTGTGACGTGCACCATCGAACGAA 1642845 29 100.0 32 ............................. AGGAAAGGACAGTGGTTCAATGAGTAACGAAC 1642784 29 100.0 32 ............................. GAACCTCGTGGCGTCGTCAGCTGTCTTGATCA 1642723 29 100.0 32 ............................. AAGACGCCACTCTCCCCTGCACCGTAGGTGCA 1642662 29 100.0 32 ............................. GTACCAATCCGGACTATCCAGCGGGAGCGCAT 1642601 29 100.0 32 ............................. GTCAGAACGCTTGATGCGCTACGCAGGTACGG 1642540 29 100.0 32 ............................. CACCGACGGGGGGTTGGCTGCACTGATAGGCG 1642479 29 100.0 32 ............................. GGGCACCTGGAGCACCACGCCGTCTCGCCCGA 1642418 29 100.0 32 ............................. CACACCAAATGTCCGAACAAAACAAGACGTTC 1642357 29 96.6 32 ............................G GGCAGCCAGGATGGAGGTCTCAAGCGCGTCGC 1642296 29 96.6 32 ............................G TCCTAGAGAATCAGTTAGGTCACCCTCACCTC 1642235 29 100.0 32 ............................. GCACGCGCACACACGTACGCGCGCCCCCACGC 1642174 29 96.6 32 ............................G CCGTAGGGGCGATAGCCCCCAGGCCGATCAGT 1642113 29 100.0 32 ............................. CCCGGCCCGCTGAACCACCTACGGGGGGGGTT 1642052 29 100.0 32 ............................. ATTCGTTCGATGGCGCACGTCACACAATCCCG 1641991 29 100.0 32 ............................. CGGCCGACCCAGTCCTCCCAGTGCTCGTCGGG 1641930 29 100.0 32 ............................. ACCGAGTACGGTGGAGCAAACATCACCACGGG 1641869 29 96.6 32 ............................G CGGCCGACTGCTGTGCACCTCCCGGGCGATCC 1641808 29 96.6 32 ............................G TCCCAAACACCCCCTGTCTACTCCATCACACC 1641747 29 100.0 32 ............................. ATCATCGGCACCACCTGGCTGCTGGCAGGGGG 1641686 29 96.6 32 ............................G GGAGAGCTCCCCCTCCTATGCTGGTCTCAGTC 1641625 29 100.0 32 ............................. ATGTGTTCGTGGGTTGTTGAGGGTTGGATTAG 1641564 29 100.0 32 ............................. ACAAAGCCGAAAACCGCGACACATAACGAGAC 1641503 29 100.0 32 ............................. GCCATCGACGCCACCTGGCTGCTGGCAGGGGG 1641442 29 96.6 32 ............................G TCCCGCATCCAGTTCAGAGACTGCACGCCCAT 1641381 29 96.6 32 ............................G TCCCACGCCTCCCCTAGGACCAAGGGCCCAAA 1641320 29 96.6 32 ............................G TCCTAGAGAATCAGTTAGGGCAGCCTCACCTC 1641259 29 100.0 32 ............................. GGATGTTCGAGCTAGATCGAGGTGAGACCACA 1641198 29 96.6 32 ............................G ACAAAATCCCATCCGCGACGATATTGCAGGCC 1641137 29 100.0 32 ............................. AGCAACGCATAACGAGACCGCCATCACAACCA 1641076 29 96.6 32 ............................G TCCCACGCCTCCCCTAGGACCAAAGACCTAAA 1641015 29 96.6 32 ............................G GTGGTGGCGGTGATGTTGTCGATCAGGCTGTT 1640954 29 100.0 32 ............................. GCGCTCCTGGAGCACCACGCCGTCTCGCCCGA 1640893 29 100.0 32 ............................. CTGCCTGTCCATCGGGGTGGTGGCCCTCTCTC 1640832 29 100.0 32 ............................. TAGGCCAAAGAATGTACGCATGACTCTCTCCT 1640771 29 100.0 32 ............................. TGCTCAACCCAGTCCTCCCGGTGCTCGTCGGG 1640710 29 100.0 32 ............................. ATCCGGAAGCAGCTCACCGCGCCTCTCCTCTC 1640649 29 100.0 32 ............................. AGTTCCGTCCCAGTACCTGACTGGCACCTCAC 1640588 29 96.6 33 ............................T CTCTCGCCATCCTCGCCGTCCCAGAGCCTGACC 1640526 29 96.6 32 ............................T GACTGGCCCCCAATCCTCGCCGAGGCCGGCTA 1640465 29 96.6 32 ............................G TCTCCCACCATGTCTGCGACCCACGGGTCGAC 1640404 29 96.6 32 ............................G GCCCGGAGGAGGGGAGTCTGATGCTGACAGCA 1640343 29 96.6 32 ............................G CCGTCAGGATCGCGCTAGCCAGCTCGATGTCC 1640282 29 100.0 32 ............................. CGGTCGACCCAGTCCTCCCGGTGCTCGTCGGG 1640221 29 100.0 32 ............................. TGTGCGTCCGCACCATCACGCGAGTAAAAGGT 1640160 29 96.6 32 ............................T CCTGGGGCGCAGCTCCCGCACGAACCGGTCGA 1640099 29 96.6 32 ............................G CCACAGGTTGTTCACCTTGTAGACGTAGCCGC 1640038 29 100.0 32 ............................. CTATCGACCCAGTCCGCCCGGTGCTCGTCGGG 1639977 29 96.6 32 ............................G CCACGACACGCCCGCACGCGCACACGCGCGCA 1639916 29 100.0 32 ............................. GAGGTTTTGGCTCGCCTCCCTGACGGCATGGA 1639855 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 61 29 98.4 32 GTAAACCCCGCGCACGCGGGGATGATCCC # Left flank : TGTCGAGGGCGGATCGAACTACGCCGTGCTGGACGCTGAGGAGGCTGGCGCATGGTAGTGCTGGTCCTCTCCGCAGCGCCCGCGCAACTGCGCGGTTCGATGACAAGGTGGCTGATGGAAGTCGCGCCTGGAGTGTTCGTTGGTCATCTGACAGCTCGGGTACGCGAGCAACTGTGGGAATTGGTACGGGCCTACATCGGCGACGGGCGTGCGCTTCTCATCTGGTCGACACGCTCCGAGCAGCGCTTCGCAGTGGCTTCGCTTGCGCACGACCGGGAGCCCGTGGACATCGAGGGCTGCCTGGTGATGAGGACCCCGTACCGCCAGATCGAGGCGGCGCACGCCATCCCTGGTTCCGTCAAGCCAGCGAAGGAGTCGTGGTCGATCGCCGCTCGACGACGCCGCTACCGCAACTCGGCGGAGCGGGCGCTAGGTCACGAGTGAAGGTAAACGACCCCTGGTAGACTAACGGACCGTTGGGATTCCAAGGATTGCCAAGT # Right flank : CCCCGTCGGTGGTTCAGCGGGACGGGTTGGAGTATGGCCGAAATTAAACAAAACCGTATTCCGGGGCTTTCTGGGCTGGATATGACGGCACCTTTCGTTGTAGAATTTCTTCATGCACGTGGTTGTGACAGACGAGGAGCAGCAGGTCCTTATCAGGTGGAAGAAGCGAGGTGACTCCCTCATTCTCATCCGGTTGAAAGCTGAGGCTATTCTCTACGCCTCGCACGGCGTTGACCTGGATTTCATTGCGGAGATGGTGGGGCGCACGGTGAGGACTGTTAAGGAGTGGTTGGCGTCTTGGCGTGTCAGCCGTCTGCATTCGGTGGTCACCGGTCATAAGGGAAATCAGAATGCGGCCAAGCTCACCCGCGAGCAGAAGGAGCAGCTCAAAGAGGTTCTGAGCCGGCCACCGTCACAGTCCGGCATCAAGGCGGACTTCTGGGATGTTCCCGCCCTGGCTGACGTGGTGAGGACCAGATTCGACGTGGAGTACGAGTCGG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 2802943-2803484 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134363.1 Actinomyces slackii strain NCTC11923 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2802943 36 100.0 35 .................................... TGAGCGGCGGCGTTGAGGTAGTTATCAGTAATGCG 2803014 36 100.0 36 .................................... CCTTTCTCACACGGCCATGAACACGCCCGGGTCAGG 2803086 36 100.0 35 .................................... GGCAATGGCCTCAGTAGTGAATCTAGGGTTGTCCA 2803157 36 100.0 37 .................................... CGACGCCCTCCAGGGTGTCAAAGGAAGTCACTACATG 2803230 36 100.0 37 .................................... CAGACCCATGCCTGTCCTCCTCTCTTGTTGATTTCCG 2803303 36 100.0 38 .................................... CCCTCGGGGAGGGTGTTGACGATGTTCTGCCTGCTGTG 2803377 36 97.2 36 ...............................A.... CACCCCATTTGAGCCACTCCATGACCATGTTCGTCA 2803449 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 8 36 99.7 36 TCAGAAGGCACCACGCGCCATAAGGTGCATTGAGAC # Left flank : TCTGAGCTCGCGACTGCCCCGGCGAACAGGGATGAATGTGCGTCGGCGACGCTCATGCACATTCATCATGGTGCAGCCCTGGAGGCATGGGAGCCGGATCCGCGGAATCATGCGGATTCTCGGACAGATGCTCCGAGGTGGACCATGAATGAATGTGCACGACCAGTCCCCACCTGCTGAGCCGCCCGCCGGCCAGGCGCCCGTGAGGCCCGCGCGCCCAGGACCAGCGCGCCGTGAGGGCGGGGCGGGGAGTCGGTGGGGGGTGGTCCTGGAGGGCGGCAGGTTGTCTGATGTCGAGTGGTGCGTGGGCACTTTTCCGCAAGGCGTCGTTGAAAGCCGGGTGGTGGAGGCTCAAGAAGCGCATCGCTGGCGCTGTGGCGCTGACCTGCGAAGATGTGGTAGAACAGTCCTGGTGCCGAGGCGGTTCGACAGGTGCCTGAGAGCCGCTGGCGCTACTCGCCGCATCGTCCCTGGTCACAGGGGGTGGATCGGGGGGTGGG # Right flank : CTCATAGCTGGCGAGATCGAACACCATAGGTGTGCCTTGTCAGAAGGCACCGCGCGCCATCAGAGTCTGCGCGGATAGGTTGACCTCATTGCCAAGCCTCACAGACGTGCCTTTGCGTCGCGGGCGACCGGATGGTCGCACGACAGCGCGGGGACACGCCCAGGCGCTCCCTCCACGGTGAACATCTGTGACGGCCCGGATCGGCCACCCCACCGCCCCGGCAGCCTCCTGACCTGGGCATCTGCGGACATGCCCCTTGGCGTCGGGCCCGAAAGATGTTCACGACGGGCACCGGGCGCATAGGATCTGCGCCAGAAGCGCTCACCAGACGAGGCAAGGAGGCGACATGCGCATCGGATTCATCGGGGCGGGCAATATGGCGGGGGCGATCGTACGCGGGGGCATCGCCTCCGGTCGACTGCGAGCCGAGGACATCCTGCTGGTCTCCGGCCCGGACCCCAGCGCCCAAGCACTGGCCGCTGACACCGGCGCCCGCGTGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGAAGGCACCACGCGCCATAAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //