Array 1 18319-17029 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAFU01000020.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22469, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18318 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 18252 36 100.0 30 .................................... GGCGGATGGCATACGGCGTGCCTTTTCGGT 18186 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 18120 36 100.0 30 .................................... CCGTCACTACACGAACTGGCGGACTTCTTG 18054 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 17988 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 17922 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 17856 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 17790 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 17724 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 17658 36 100.0 30 .................................... CTTTCACTTCAGTAATGGCTTCGGCATATA 17592 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTTCTATACA 17526 36 100.0 30 .................................... GTGGGAGTTCGTCTATGAATTCGATGGCGT 17460 36 100.0 30 .................................... TTTGCTGCCCGACAATGCGCGTCCGCAGAT 17394 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 17328 36 100.0 30 .................................... TTCCAAAGTTTTAATTTATATTATTTTAGT 17262 36 97.2 30 ............................A....... CAGAAGATGATAACTGTGCTGGGGGTGCGT 17196 36 100.0 30 .................................... ACGCAATAACGGCGAGTTTACGCATCAATG 17130 36 100.0 30 .................................... TAACGATTGAAAGTGAGTATGTATTAAGTA 17064 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTGTCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //