Array 1 1-638 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAG01000218.1 Salmonella enterica strain BCW_6132 NODE_218_length_679_cov_1.19371, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 28 96.6 32 -............................ ACACATATACTCTCCCCGTTTGCATCATCAGG 61 29 100.0 32 ............................. ATCGCTAAATCTAAAATGCCCTCGTACAGTGA 122 29 100.0 32 ............................. CGCAATAAACGGCATCAGCTATAGCTTGATAG 183 29 100.0 32 ............................. AAACTGCGTTTGAGTTCCAGCCGCTTTTTCCT 244 29 100.0 32 ............................. GCCGACGACAAAATCACGGTCACAACGGGTAT 305 29 100.0 32 ............................. GATTCGACTTTATAGGGATTGATTAGAGGAGA 366 29 100.0 32 ............................. TTATCTATGCCATAGTGACCCCACGTTACATA 427 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 488 29 100.0 32 ............................. ATTGTTTCCCGCTTGCGCTTGCATCGCCGGAT 549 29 100.0 32 ............................. CTTACTATCAGCTCGCGTGCTGTTTGCAGGCC 610 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GATGCCAAACTGGTCAAGCTGGCGATTATCAAGTGTTCCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 626-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAG01000226.1 Salmonella enterica strain BCW_6132 NODE_226_length_660_cov_1.08205, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 625 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 564 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 503 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 442 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 381 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 320 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 259 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 198 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 137 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 76 28 96.6 0 .............-............... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGGTCAGTATGCACTGCTTGATAAAGTCAGGCC # Right flank : GGGGATCGCGCTGGCGGTCGCATCCGTTGCCGTGTGTTCCCCGCGCCAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 694-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAG01000033.1 Salmonella enterica strain BCW_6132 NODE_33_length_51835_cov_4.87042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 693 29 100.0 32 ............................. GAGTTTCATAAATAATAAAGCCCCGTCTTTTA 632 29 100.0 32 ............................. CTCGGGTTCGGTTTATACAAGGAAGATCAGAC 571 29 100.0 32 ............................. TTACCTGCACTGCGCCAGCGATTTTCTATTAA 510 29 100.0 32 ............................. ACTTATTCGACGGGAAAAGCATTGATGTTACT 449 29 100.0 32 ............................. GAGCCAGCCCTGCCAGCTTTAACATGCGCTGA 388 29 100.0 32 ............................. CTGCCCGTCTCGTTGTTAATCGGGTTACCGTA 327 29 100.0 32 ............................. ATCTGGCTGTACTGGCTGGCGGTGATTTCCTC 266 29 100.0 32 ............................. CCCGCCCAATATCATTCCCATTCGGGTACAAC 205 29 96.6 32 ...............T............. ACATGCGCGAGGGTGAGCGCCTTTGCCGCACT 144 29 100.0 32 ............................. GCACGGATATGGTTGACTGCATTTCGCTGAAC 83 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GGATGCGATCAGGCTGGCGATCAAGCAGATGTCGTATTCAGATCGGAAGAGCGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 239-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAG01000547.1 Salmonella enterica strain BCW_6132 NODE_547_length_239_cov_0.762195, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 238 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 177 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 116 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 55 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GAGATATGAAAAACGTAAAAATTTACA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 47-1172 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAG01000072.1 Salmonella enterica strain BCW_6132 NODE_72_length_2961_cov_4.23112, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47 29 96.6 32 ..A.......................... GATGCGATCAGGCTGGCGATCAAGCAGATGTC 108 29 96.6 32 ..A.......................... ACGTTCGGCCATTTTCCCGAACGCCGTAAAAC 169 29 96.6 32 ..A.......................... GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 230 29 96.6 32 ..A.......................... TCGTATCCCTGCAGCTCCAGCGACCCTTCCCT 291 29 96.6 32 ..A.......................... GCAGGGTTTTACGGCTCCACGTGTTTTTTACG 352 29 100.0 32 ............................. CGAGAGATCATAGACCAATGGACTGAAAGACT 413 29 100.0 32 ............................. AATTGATCACAATCCTGTATAAGCTGCGCAAA 474 29 100.0 32 ............................. AGGCTTTGACAATGGCCTGGTTAAGTTGGAGT 535 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 596 29 100.0 32 ............................. AGTACGAGGCACTATTCGGCAAGAAACCGCAC 657 29 100.0 32 ............................. GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 718 29 96.6 32 ........................C.... GATTGTTCAGATTGGGAATTTGACCAACGCCC 779 29 96.6 32 .............T............... CCTGAGGAGATATTCACCTTCCTGCATTTCAT 840 29 93.1 32 .............T..............A GTCAAATAAATATGAGTGAAGAAGCCAAAGCC 901 29 100.0 32 ............................. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 962 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 1023 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 1084 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 1145 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 97.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGGGGATAAACCGGATGCGATCAGGCTGGCGATCAAGCAGATGTCG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 832-1716 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAG01000008.1 Salmonella enterica strain BCW_6132 NODE_8_length_156597_cov_4.73739, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 832 29 79.3 32 ......................ACGTGT. GATCTTTTTCCTCCTCAAATCGTGGGGAATGG 893 29 100.0 32 ............................. TGAATCGCGAGATGGGTTTTATGATGCGGATC 954 29 100.0 32 ............................. GACTGGTATATCAACAATCATGAGCAATTCTG 1015 29 100.0 33 ............................. GAATCCCAATCTATTACCGGCACGTAGCCGGGG 1077 29 100.0 32 ............................. GCAATATCAACCGGGCGACCTGTCGCCTGCTC 1138 29 100.0 32 ............................. GCTCTTTCTCCGTTAGTGTGAATTTCGTCTTC 1199 29 100.0 32 ............................. TAACGCTTCAATGTCGCAAGCTTCAGTTCGTT 1260 29 100.0 32 ............................. GATTTACTAAGGTCAACGAGGGATTGAATTGG 1321 29 100.0 32 ............................. GCGAGGATCTTGTGTTGCAGGTTGGTCTCGCC 1382 29 100.0 32 ............................. CAGCGCCGTCCCGCTGCGCAGATGTTCGGTGA 1443 29 100.0 32 ............................. CAGGTCTATTGGACGATCGATAAAATCATTCA 1504 29 96.6 32 .............C............... ATAATAAGCTCAATAATGTAGATATTGAATCA 1565 29 96.6 32 .............C............... ACGACGGCACAAAAGAAATTTCCACCGTGGAT 1626 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 1687 29 93.1 0 ............TC............... | A [1714] ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.5 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //