Array 1 1563873-1562215 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP005995.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002064 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1563872 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 1563811 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 1563750 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 1563689 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1563628 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 1563567 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 1563506 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 1563445 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 1563384 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1563323 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1563262 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1563201 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1563140 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1563079 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1563018 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 1562957 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1562896 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1562835 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1562774 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 1562671 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1562610 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1562549 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1562488 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1562427 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1562366 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1562305 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1562244 29 96.6 0 A............................ | A [1562217] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1581257-1580131 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP005995.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002064 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1581256 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 1581195 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 1581134 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 1581073 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 1581012 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 1580951 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 1580890 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 1580829 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 1580768 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 1580707 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 1580646 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 1580585 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 1580524 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 1580463 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 1580402 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1580341 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1580280 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1580219 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1580158 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //