Array 1 12632-13923 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVFH01000029.1 Absiella sp. AM10-20 AM10-20.Scaf29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 12632 33 97.0 34 ................................C CAGATTTCTCTGAGTTTAAAGAAGTTAAATAGCA 12699 33 100.0 34 ................................. AAGATTAAGTATATGGGTATGCACCAGGAGAGAG 12766 33 100.0 33 ................................. TCATCTGTAAGATATCTTATAAAGCTGTCTTGC 12832 33 97.0 34 ................................C CAATTTGATGTGCTATTGCGCAACTTTAAAGAAC 12899 33 97.0 34 ................................T CAAAAATCAATAGATCTCCATCGTTTATATTTGC 12966 33 100.0 32 ................................. CATCAAATTTTAGATTTATGGAACTTTTAGCA 13031 33 97.0 33 ................................T TAGATGTAAATGATGTACATAATTTGTTGATTG 13097 33 97.0 33 ................................G CGGAGCAACTTAACAAAATGTTTGTTGTTTCCG 13163 33 100.0 32 ................................. GCCTGTTCATTTCGCACCTCTTTTCTGTCGCC 13228 33 97.0 33 ................................T CGCATAAGCGCTTATCAAAACTACCCGCCTACC 13294 33 97.0 34 ................................T AAATGCGTCCATATAATCGTTAAATTTTTTCTTT 13361 33 100.0 34 ................................. TCGATCCCACACGCATCATAAGCAGTTTCTATAG 13428 33 97.0 34 ................................T TTGTTTTACCAATCTTTTGATATACGCTGTCTGC 13495 33 97.0 36 ................................C CCTCACTTTCGTTTTCAAATTGATCAAAAACACCGT 13564 33 100.0 32 ................................. CTTTATCGTTACCGACAAATTTACGTCCTGGT 13629 33 97.0 33 ................................G TAGCTATCTGATTTTGATGCTACGAGATCTGTT 13695 33 97.0 32 ................................G TGCAATGTATTTTAGCTATATGTATCGTATGG 13760 33 100.0 33 ................................. TTGAAGATCTACGTGATACGATGGTTGATATGA 13826 33 90.9 34 ..........G.........A...........G ATGCAGATGTCAAAGTAACGATCCATGCAAACAG 13893 31 81.8 0 ..................A.A.--.....G.C. | ========== ====== ====== ====== ================================= ==================================== ================== 20 33 97.0 33 GTCTAGCTCTATATGAGCTAGTGGATTTAAATA # Left flank : ATACGCGGTGATTTGGATGAGTATCCACCTTTTTTAGCAAGGTGATTTTATATGCTGGTATTGATAACATACGATGTTAATACAGAAACGAAAGCTGGGAAAACCAGATTAAGAAAAGTAGCAAAAGAATGTATGAATTATGGGCATAGAGTGCAAAATTCTGTTTTTGAATGTTATATGGATAATGCAAAAGCACTTGAAGTTAAACATATTCTGGAAAAGATTATTGATAAGGATCATGATAGTTTAAGATTTTATTATTTAGGTAATCGATATGAAAATAAGGTTGAACATATTGGTGTAAAACCTAGTTTTAAATTAGATGATGTATTGATCTTATAGTAACGCGAATATGATGCTCCCATGAAATCGCTGGGAGGTTCGCGCAAAAATGTGTTATATTTTGAATAATATGTAACATATTGAAAATAGTAATGTTAATTTAAAAAAATATTGTTTGAAAATTCGTTACATTAGTTTGAATTCGATACATTTTTGTT # Right flank : ATCTAACAACGCCCGCTTATTTTGGCGATATGCTCGACTTTTTTCAGAACACCAATTTAAACACTGTACAAACTAATGAATTTATATCACATTTTTATAAACAATTTTATAAACGGCAGATAATACAAAATACTATGTCTAATGTCTTTATAATTGTGTATAATATATTCGTTTGATTATGAGGTGAAAATAAATATGTACAAACAATATAGAGAAGGCTGGCTAGAAGTAATATCTGGATGCATGTTCGCAGGAAAAACTGAAGAATTAATTCGTCGTATTAAAGTATTAGAGTATGCAAAAAAGAAAATAGCTGTCTTTAAACCAAAAATAGATAATCGATACAGTGAAGAAAATATTGTATCGCATGCAGGAAGTAGTGTGAAAAGCTTTTCGATTGAAAATGCACATGAAATATTCAATTATATTGATGATTCATATGACGTTATCGCGATAGATGAAGTACAATTTTTTGATGAAGAGATTGTTGAAATTTGTGA # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTATATGAGCTAGTGGATTTAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.62%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTATAGAGCTAGTGGATTTAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 26409-25283 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVFH01000022.1 Absiella sp. AM10-20 AM10-20.Scaf22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 26408 34 100.0 33 .................................. TAATAACAGCATTTCCCATTCTTTTACCAACAG 26341 34 100.0 34 .................................. TGGTCATTAAAATTTTCTGTGCCTGATTGTCCAG 26273 34 100.0 35 .................................. ATTTCGTGAGCTGTATACTCGTAAGAAACCATAGC 26204 34 100.0 35 .................................. GAAAACCTCTGCTGACGGAGGAGATGGTGTCCCCG 26135 34 100.0 34 .................................. TGATAGTAGGTGGAAATTATGGTAGCACGGTAGA 26067 34 100.0 35 .................................. ATTTTGACCAATAATGCTAAAACGCCACCAAGTAA 25998 34 100.0 33 .................................. ACACTATGACGGAGACGGCCATAAAAGCCGCCT 25931 34 100.0 35 .................................. AAGAAAGTAAAAATGTCGCTCCCATCCGACCAAGG 25862 34 100.0 36 .................................. TTTTTTAGGTACGATACACACTTGTATATAGTCATG 25792 34 100.0 33 .................................. TTCGAATACGTTTCCCCATTGATTACTATTTAA 25725 34 100.0 34 .................................. AAGTATGGCAAAGAGGTGTTTCAATTGCTGTTAA 25657 34 100.0 35 .................................. TATGATAGACCAACCAAATAATCCAAACTGCCAGC 25588 34 100.0 34 .................................. GATAAGATTAAGATTTTTTTTATACATCTTAAAG 25520 34 97.1 35 ...................A.............. TTTACTTCTAATTGCTTTTGGTTTACAGTTACTTT 25451 34 97.1 33 ...................A.............. TGTTATTCCTGATTTTTTAATAAGATAAAAAGA 25384 34 97.1 34 ...................A.............. CTATTTTAAAAATACCATCTATATATATTGTTTC 25316 34 82.4 0 .................G.A.....A..C...CG | ========== ====== ====== ====== ================================== ==================================== ================== 17 34 98.5 34 GTCATTATGCTATATGCATGATGTGGATTTAAAC # Left flank : AATATAAATATAGTATAGGAACTTATTTTTCATTGCTGGCATATGCAGATGAACCAATTCAGCATGCGTGGTTTCTATCACCAATTGTGAATATGCAGGTTATTGTAGAAAATATGATGGAATAGTTTCATATAGATGAAACACAATTAGAAAACAAGAGATAAACCAATTTAGATATGGTCTATTCGGATATCCTTTATGGAGAAAAGAATGATATGTGTGATTGGTTGTTCACAAATTTCATTGTGATTTACAAGTCATGAAGAATGGAGAGCATTATTTCCAAACATCTCAACAGCTTGCATATCATACTAAATGCTTAAACAATCATCTTATTTAAACGCTTGCGAACCTTAAGCTCACATGATATTCCTAGGACATTCGCGCATGGAGATATCTTATTTTGCACTATATGTATCGAAATGAAAAAAAGATTTAAAATCATGCGTTGAAAAGCAAAAAAAATTGTTTCATTAGCGTATGATTCTAACAATTTTGCG # Right flank : ATTAGCACCGGTGCTAATGAACCATTTGCAACTGTTGTTATACTTTATACGGCAATGATTGAAGCATTGTATCGTTGTAAATGTCTTGAATTTAAACTAAAAAAGATATCACATCCGATTTGGATATGATATCTTCAAAATGTTTAAGCTTTACTATCTGCCAGAACGGTTTTAGTTTCTGGCTTTTCTTCTTCATTGAATAACTTTTTACCTGAACAGAAGGTAATCATTAAGCCTAATGCCACAAGTAGAACAGCGAAGATTAATTGTAAACCATCTGTCATAAATACGAAACCACCATTAACAAATAATTTCAAACAGATATTGTAGATAGATAAACCAAGTGATGTCATAGTACAAATTAACATCAGGGTCATAGGTACATATAACATCCATCCTTTTCTTCCAGTGACTTTTAAGAATACAGATAATGATACAAGAACCATAGCGCCTAATAACTGGTTAGCACTACCGAATAATGGCCAGATATTATTATATCC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATTATGCTATATGCATGATGTGGATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 172-861 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVFH01000038.1 Absiella sp. AM10-20 AM10-20.Scaf38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 172 32 75.0 35 .AAC...A.T.T......C.A........... ATGGACATCCAACAATAAAACCACAAGCCATTATA 239 32 96.9 35 .......................T........ GAACAAATAATATCACTTTCATATAGTTTTCCATT 306 32 96.9 34 .......................T........ TGATTTACAGCCATTCTTTGATAAAGCAATAGAA 372 32 100.0 34 ................................ AAAGAAGTACGAAAATCTGTTATGAAATTAAATT 438 32 100.0 33 ................................ AAACTAGCAGATGTCTTTGGTGTAACTACTGAT 503 32 100.0 34 ................................ ATTTTTGCTGTATAATATAAGTGAAGTGAGGTGA 569 32 100.0 34 ................................ AGGTCAAGGGATTTATGAGAGGAAAAGGCAATAT 635 32 100.0 33 ................................ ATTGTCTAACATCTTACCAACGTCTGCTCCGTT 700 32 100.0 33 ................................ TTTCAATACTAAAATTTCGGGTATTTCCATCAA 765 32 100.0 33 ................................ GGAGATAGTAAGGAAGTTGCACAGGCATTAGAA 830 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 11 32 97.2 34 ATTGAAATCCACAAGTTCATGAGAAACTTGAC # Left flank : TCAATCCGGTGCTAATGTTTAATTATTTTTAAGACATTTTCATTTTTGCTTGACATGAATTACATATTTAAAATCTGGAAGTTTATACAATATATAAAAATAAAGTCCAGCCACTAAAAAAAGCTAAACTTTATTTTAATTATTATATGCACAAAGCTATCTACAAAAAATA # Right flank : CCGCAAAAATATTATTTACTTGCTAACTTGTAACAAATTTCCATCAAATGAAATCTCTCTTTCTTTCAATCTGTTACATATCACTGATTAAGACACACAATTTAGCGCGAATCTCCTAGAGAAAACATGGGAGCTTAATATTCGCAAATCTTAAAATCTTGTTTTCCTATGATAATTATCATCGAACATGATAAATATCTGAAATAACTCTTCTGCTGAAAATTCAATTTTCCCTTGATATTTTTCAACAATCTGTTCAATATTTCGGAAACCAAAACCGTGCATATGATGATCCTTTTTATTACTAATTAAACGATCATCCTTTATAATCACTTCATCTTTATCATAAGAATTTGATAAATCAATATAAATAAAATCATCTTTATGTCCAATACTTAAACGGATTAATTTACGCTCACATTTACAAACCGCCTCTAAACTATTATCCAACAAATTTCCAAGCAAAATACATAAATCCATATCATCTAAAATTGCCAGCG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATCCACAAGTTCATGAGAAACTTGAC # Alternate repeat : ATTGAAATCCACAAGTTCATGAGTAACTTGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 1 162097-163660 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVFH01000007.1 Absiella sp. AM10-20 AM10-20.Scaf7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 162097 33 100.0 32 ................................. ATTTGATCGATGAAATATCCACTAGTATTTAA 162162 33 97.0 34 ................................C ATCCTCATTGTACTTGTCATACTCATCATTAATC 162229 33 100.0 34 ................................. TCAAATGTTACTACTTCTCTTCCGCTCTCTTTAT 162296 33 100.0 32 ................................. CAGCAGAGTACGAAAGAGGAGTACATGTAAAG 162361 33 100.0 32 ................................. ACATCTGCATGAATTCCTTTTGATTTTACATA 162426 33 97.0 34 ................................A CGATACGATCATAGTCATGTTTGAAGTAATAGAA 162493 33 100.0 34 ................................. AGGTGGTATCGTTGAGGCTATCGGTACTGTGATT 162560 33 100.0 32 ................................. TTAATCTTTGTTTCATCCTGGTGCTTTAGCTC 162625 33 97.0 33 ................................G AGTTGATTATATGAAATTTAAACCATTGAATAT 162691 33 97.0 34 ................................A TTATGCTCAAAGTCATGTGATCGAAGAAACAGAA 162758 33 97.0 33 ................................G TCGTAGTAGTACAAGAACTTTGGCACATTGGTT 162824 33 100.0 35 ................................. GTTAGATGGTCATATGGCACTGGCACGCCTTCTAT 162892 33 97.0 32 ................................A GCACTGACTCTTTCCATAGCATCGATCGTACG 162957 33 100.0 34 ................................. CTGGTGCATGCTCTGGCAGGTTCCTCGTTCTTTG 163024 33 97.0 35 ................................C GTAAAATGTATTTATCTTAGTGGACAATGCCAGTG 163092 33 100.0 33 ................................. TTAAGAAAGTGATTCCGTCAGATATCGCTAAAA 163158 33 100.0 34 ................................. CGAAAAAAGTCATATGCCGAACGTCAATTGTCGA 163225 33 100.0 34 ................................. AGCAAAACATTTGATTATCCTAGTTTGCCTTTAT 163292 33 97.0 34 ................................A GTCATGGATAAAAGTCCTCAATGACGATCCTCAA 163359 33 100.0 35 ................................. CAAGAACTTGCTGATCAATTAGTCAAAGATGGTTG 163427 33 97.0 34 ................................A CTTTATGTTCTCCGATTGCATCATTGTTATAGCC 163494 33 97.0 34 ................................A CTGTAACCGGCACGAATGGCTGCCTGTGTGATGT 163561 33 100.0 34 ................................. TCCTTTCTGTGCAAATCACATTTATACCTCTACC 163628 33 84.8 0 ..........T........C..AT........G | ========== ====== ====== ====== ================================= =================================== ================== 24 33 98.1 34 GTCTAGCTCTATATGAGCTAGTGGATTTAAATT # Left flank : GATACGTGGTGATTTGGATGAGTATCCTTCCTTCTTAGCGAGGTGATTTTATATGCCGGTATTGATAACATACGATGTTAATACAGAAACGAAAGCTGGGAAAACGAGACTAAGAAAGTAGCAAAAGAATTTATGAATTATTAGCATAGATTGCGAAATTCTGTTTTTAAATGTTTTATGGGTAACGTAAAAGCACTTGAAGTTAAACATATTCTGGAAAAGATTATTGATAAGGATTATGACAGTTTAAGATTTTATTATTTAGGTAATCAATATGAAAATAAGGTTGAACATATTGGTGTAAAACCTAGTTTTAAATTAGATGATGTATTGATCTTATAGTAACGCGAATATGAAGCTCCCATGAAATCGCTGGGAGGTTCGCGCAAAAATGTGTTATATTTTGGATGATATGTAACATATTGAAAATAGCGATGTTAATTTTAAAAAATATTGTTTGAAAATTCGTTACATTGGTTTGAATTTAATACATTCTTGCT # Right flank : GTACATTATGTGCTGCCTTTTAAAATTCTGTGCGTTTAGATTGATAAGAGTATTACAGTCTTTATCTAATATTTCTGTGAAAAGCAACTCCACTTGACATACTTATGATCTCATCTTCAGAAGAGGCTTTGTAATATATCATTTCTTTGAACGCTTATTGAAAAAAGTACTACTCTATTATAAATTATAAAATTGAGGCATCCTTGTGTATTATAGTTATATCACGCTTGCGTAATATGTTAGGTTTTAAAGCACATGATACTTCATACCAGCTGTAATCCATTCTTTTAAGATAATTAGATTGCTACTAAATTCAATATAAGTGTAAGCATATACCTTTGCATATTCTTTACAATTCATAAAATAACCATATCGCTCGTGAATATATAATAAAGGATTTCTAAGAAGTACTACTCACGCCGACAATAGTTGTCTTAAGCTGTATGGTCACTGTTCCAAGGGAAGGGATCGCCAATATTGTATAAATTAATGTATTACCT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTATATGAGCTAGTGGATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.62%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTATAGAGCTAGTGGATTTAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //