Array 1 57150-57645 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUKD01000012.1 Parabacteroides sp. TM07-1AC TM07-1AC.Scaf12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 57150 32 100.0 33 ................................ ATATGATAATTGATAGATTAAAATGGGCTAACA 57215 32 100.0 36 ................................ TCTTGAAGCTATTACTCATATCCCTAAAAACCCGAA 57283 32 100.0 34 ................................ CTATTTGAACAGGATCATAAGCATGGGACGCATA 57349 32 100.0 35 ................................ GAAAAGCCTTTTAAAACAAGAATGGTGCAAGTATT 57416 32 100.0 33 ................................ AAATTCTAAGCCTCCATTAACAGCGGAAGATGC 57481 32 100.0 34 ................................ AGCTATACCATATTGACGGTTAATTTCCCTTATC 57547 32 100.0 35 ................................ AGTCTCATTCTGTAATCTACGTGTAGCATGGCAAA 57614 32 93.8 0 ......................AA........ | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 99.2 34 GTCGTATCCTTTACGGGTACGTGGATTGAAAC # Left flank : TTTTCTGTCATACTGGCGCAACACGCAATACCTTGTAAAATAGAGATATTCTTTGCTACAATACTGTATAACTCTGTCCATATCAGACACATATAATTGATTAACTGATAATGGATCATAATCTTTTATCTGGTTAGGATACCCACAATGGCAACATCGATCAGACCTAATAAAAGAACCGTTATATTCGAAATGATAGAAGGTTTTGCTAGTTGAAGATTTTTTTATTCATGGTGTTGTATATAATAAAAGCTTATTCTTATTTTTGTAGACGAAATTACAGATTACTTTATATATAACATTATTACACAACAATGTTTCAATTATAGATAAAACGCGAACCATAAGTGATAACAAAAACATAGGACATTCGCACTCCCTGTAATACAGATGTTTACATTTTTATTGATAATAAGACAGACATTGTTTATTGTCTTATATCATTATTCGCAGAATCATTCGCTGAAAGTGTTATAAATAAAGCTTTTGGTAAACATGCA # Right flank : CTTAAACCAGCCCATAGAATCGTTCACGTCGCCTTCGTCATACCTTAAGGTACGTGGGTGAAATTCCAAGATGATAATTTGAATAGGTTAAGCCGATATGTCGCATCCTCACAGGTGCATAAACAATCCAGCACACATTTAAATTTAAGGGCTGAGAATAGCTATTTATCAAAAAATAAAATGTAGATTTGTATCCATAGGGGTAATTAATAAAGCTCTGTTTTCTAAGTACAGACTCCTATATTTTAATTAATCAACAGTTAACCTGACAATTATGGAATATCATAATAAAGAATATTGTTTAGAAGTTGAAGGTAAGCTTGCCTGTTTTACCCGCCCTGAAATGAAGATCGAGCGAGTCAGTTATGATGTTATTACACCTTCTGCTGCACGTGCTATCTTTGAAGCCATATTCTGGAAACCTGCCATTCGATGGAATATAACACGGATAGAAGTTTTGAAACCAATAAAATGGATTTCTTTTAAAAGAAATGAAGTAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTATCCTTTACGGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 63405-63767 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUKD01000012.1 Parabacteroides sp. TM07-1AC TM07-1AC.Scaf12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 63405 32 100.0 33 ................................ TCGTAAAGCGATCAATGCCTTGCGACGCTGATG 63470 32 100.0 34 ................................ GATCGTGAACAGATGATCCGGGTCGTGGCGGGAA 63536 32 100.0 35 ................................ TGGGCATCAGAGTTTGCACACTTACTCGGCAGTAA 63603 32 100.0 34 ................................ CTATCACAGCAAAAAGATTAAAAAAGCGGCTTAG 63669 32 96.9 35 ........................G....... AATGTAAATACTTAAGTCTTTTTTATCACTCATGA 63736 32 81.2 0 ......T...T.ACG.....A........... | ========== ====== ====== ====== ================================ =================================== ================== 6 32 96.4 34 GTCGTACCTTATGTAGGTACGTGGATTGAAAC # Left flank : TTAGATAATTATCCTGTCTTTTTAATAAAATAGCAGTATGTATGTTCTGGTCACATATGATGTAGAAACAATGACTCCTCAGGGACAACGCCGGTTACGACAAGTAGCACGACAGTGCATGAATTACGGGCAACGTGTTCAAAACTCCGTTTTTGAATGTTCTGTGTCTCCTACTCAGTTCACTGAATTAAGATTGAAACTATTAGATATTATAGATAGTAATAAAGATAGTATCCGTTTCTATTTCCTGGGTAATAATTACTCTAAAAGAGTCGAGTATATCGGAGTTGTCACGTCTTATAATGTAGAGGATGAGTTAATAATTTAAGTCTCTGCGAACCTGAAGTGGTAACGGATATACAAGGATGTTCGCTATTTCTGATTTTCAGCATATTATATGCTTTACCTTTCGTTCCACCATAAAGAAATAAGACAGTAAATAAAGTTTCGCATAACAGCATATCTAATATGCTGTAAATGTTTGTGTTATTTATTATGGA # Right flank : CTACAATAGGGAAGAGAGAGTATCGCTTTTATGTCGTAACTTATATAGGTACGACTTAATTCATTTACCTATTTAAGGTTATTACCATGTTTCAATCCACATACTTCGTAGAGTATGACAAAACACCTCACAAAGAAACAAATCCAGTCCTTTCTTTATTCTATCAGCAACAGCTCTTCCGCCCAAGCCCCATCCAACACCAGTCCTGCCTGCGGATCATAGCTACTCGGATCCTCCAGAATGAAAACGCCCGAATACTCGATAACTTTGCCACTCCGTGCCAGCTCTTCAAAGTCCCACTTTTTCACAGAGACACTATATTGCTGTAACTTGCGTAATAGCCAAAACTCCGGACCTTTTTCTTTCAACTCCCTAATAAGATCTGCGCCATCACCATAATTGACCAGGATGGAAACAGAGTTCTTATCATCAATCAGGCAGAACTTCTCGGCAGCAGTTGCAAACATAAAGTTCATTTCTGCAAAACCTTTATATAACAA # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATGTAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 226694-226918 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUKD01000010.1 Parabacteroides sp. TM07-1AC TM07-1AC.Scaf10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 226694 30 100.0 35 .............................. TCGCAAAGCACTCAAGTCGGTACAAACCGTATTCC 226759 30 100.0 35 .............................. GAGACAATAGTGTCTCCATCTTCCATTTCCTTTTT 226824 30 100.0 36 .............................. TGTTTATAGCGGATGTAGTCATCGGTGGCATTAATT 226890 29 90.0 0 ..............G..-...........A | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 97.5 36 GGTTTAATTGTACCTTAGTGGTATTTAAAG # Left flank : TTTAAATTGTTATTGGCATGGAATATAACAGAAAAAGAGAGGGGATGGGTTTGGAGAGGATACCAAGATGGTACAATTAAGTTAATACTTCGATCCGGGCACGAAACTCATCTATGCGATTTTTAAATACCATTGAGGTACGATTAAACTTTGCTACGCTCTTACAATTCCGCGAATACGAATGGTTTTAAATACCACTAAGGTACAATTATACTATGCAAATATAAAAAACACTTGGACAAATTGGATAATAAAACTTACAGATATATTAATATAATGTATATTTGGAAGCGTTATTCTACTCTAGTGACCTATGATGTAAAATAGGTTTTTAGTACAGTAGAAACATATGGCTTGGAAGGTATAAGAGTTATATGATAGTTGTCGATCCCCGGGGTATTTTATACAATTGAAGGTCGACAACTTTCATTGATAAATAAAGAAGGGACAAACAGGCTTAGAGAGTGTTTAGAATAAGGAGAACCTAAAAATTTTATAGG # Right flank : ACGGAAATAGATAGTCGGCAGTTCGTCGATAATGTACTTTAATCGTACCTTGGTGGTATAAATCTTATTCTAACTTTTTCTAATAGCGAAATCATCTGTTAATCAAAGACAATCCTCTCTTCAATGGGAGTACTCGTCATTTAAAGTCATAAATAAAGCAAGAGATTCATAGGTTATGCCAAAATTATAGTTATATTTGGGAGAAACACAGTATACTATTAACTTACTTAGATTATATCTATACATTATATAATATATAACCTAAATATAATACCAGAATTACTATATGAGAATACATCTATCAACGAGCGCCAACAACGAACTCGTTCCTTTCAATTACCAGCAGAAACTTATTGGAGTTTTGCACCGTTGGCTTGGGACAAACGAACTTCACGATAAAATATCCTTATACTCTTTCTCATGGTTAAAAGGAGGAAAAAGATATAAAAACGGACTCAATTTTCCTTATGGCGCCAACTGGTTTATCTCTTTTTGTGAAG # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTAATTGTACCTTAGTGGTATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //