Array 1 39594-39927 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSYM01000020.1 Rhodoferax antarcticus ANT.BR grfa_new.contig.19_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 39594 28 100.0 33 ............................ GATCACGGCGGATTTCAAGCTCAGTCATCACTC 39655 28 100.0 33 ............................ AGGGAATTTCCCTGCGCTCATCCAATTTCGTAC 39716 28 100.0 34 ............................ CGGCCATACGCGCGTTATGGAGCTTTGAAACGAT 39778 28 100.0 33 ............................ CGGCCATACGCGCGTTATGGAGTTTTGAAACCA 39839 28 100.0 33 ............................ GCCAACCGTTGTTATTTTGGCTCTTGCGACCAT 39900 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 6 28 100.0 33 TTGATACCTATGCAGGCATAGGGCTACC # Left flank : AGCCTTGGTGGAAACGCGACCGCCTTCCAAGATCATGCGAACGAGGGCATAGTGTCCCCGTGGAGAAGCAACAACCTTGGCCGCGAGCTGCTTGGACAAGACACGGTTTGATTGCCAAAGATCCTTTGCTGCGACTTGTTCGTCGAGAGTCAAAGTCACGATCAGAACTGACTCGCAACCGAAGCCGCCCATGTGCTTAAAGACAAATGCCTTGAACTCATCTTCGTAAAACAATTTCGCCGCGATTGCAGCTTCACAGGCGAGAACCATCGCGGCGGGGAAATCAGAAAGAGAAGGGTTTGATTTCAAAATAATCTCCAGTTGTGTTCAGCGAAATGCTGAGACTGTCTGGAGATGTCGGATCAACGTAATAGACGCTCATGTCCGAGCGCGAGAATGTTTCTTGCAGCGTTCACGTCGCGGTCATGAACTGATCCACAGACATTGCAAGTCCACATAGGGCTACCAGGGCTGCGGGCCATGCCTACCCGGCCATGTGT # Right flank : CTCTCACCGTAAATCATTGATTTGATTGAATAATATCACCATATTTACTTGTGCCAATTTTAGTATTATGATTTAAAGTTTTGCATATTATCAGAGTTTTTCTTCGACAACTCATCCAATACGCGATTCACGTTCGCCGTCAAAATTTCGTCACTTAAATTACCTTCACTGGAAAACACATTCCAGGTCAGGTCGATCAAATCAGCTTCTGATGCTTCAGCGGCCAGCGTCAGGCTGGCTTTGTAGACCTTGGCGAAGACAGTTGAGAAGCGTTTTCTGTTGACCGGGTTGGCCAATGAGTGCTGCACGCCTCGCGGCACGCCAAAGGCAATGTAGGCCGGGTCAATCCCTTTGGCCTCCAGACCATAAAGCTGCTCCGTCGTGGGGCACCAGGCTCCGGCTTCGTATTTCAAAAGAGAGAGTTTGGTCACGCCAAGGCGCTCTGCGAATTGCGTCTGGTTTTCACCGAGCTTCTGTCGCTCCGCCCGCAAACGCTCGCC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGATACCTATGCAGGCATAGGGCTACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 338946-339761 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSYM01000008.1 Rhodoferax antarcticus ANT.BR grfa_new.contig.7_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 338946 37 100.0 34 ..................................... AAGCCGAAAGCGTTTGCAGCCGCCTCGACAGCCA 339017 37 100.0 34 ..................................... AACAGCCATACCGCCGAGGGGGCCACCGAGGGCC 339088 37 100.0 34 ..................................... GTTAGTTCTGCTCTCAAGGTTTCTCCTTATCTTG 339159 37 100.0 34 ..................................... TCTACAACAGGTTTATCTACAACAGGTTTATCTA 339230 37 100.0 35 ..................................... CGGGCATGGGTGTGGAGGCTCCTGGGTGTGAGGGA 339302 37 100.0 34 ..................................... CAACCCGGACATTCGTTATGGTCGGACGGGCGCT 339373 37 100.0 34 ..................................... ACACGTCAGTCGCTGGCGTTGATTCGACGCTGGT 339444 37 100.0 34 ..................................... CATTTAACGCAGAGTTGAGCGCCCCATAGGGTGC 339515 37 100.0 34 ..................................... CCTGCTCAGTAACAGCGTAAACCCCCTCATATCC 339586 37 100.0 34 ..................................... ACCGCATAAGTTTGACAAGTTCGATAGCTCAAAG 339657 37 100.0 34 ..................................... GTCGCCGCTATATTCGGTGTCCATCAGCAGTGGT 339728 34 91.9 0 ..................................--- | ========== ====== ====== ====== ===================================== =================================== ================== 12 37 99.3 34 AGTTCGCCCGCCAGCAATGGCGGGCGCGGATTGAAAC # Left flank : TGTTATGACGTGAACACAGAAACCAAGGCGGGCCGTCGCCGTTTGCGCCGGGTAGCCCGGGTCTGCGAGAGCACCGGGCAGCGGGTGCAAAAGTCGGTATTTGAGTGCCAGCTAGACGTGGCGAGGTTCGAGGCGCTGGAGCGGGAGCTGTTGGCCGAAATCGACCCTACCATGGACTGCCTGCGTCTTTACAGAATTCCTGGTACGCGCGGGTTTGAGGTCATTGAACATGGCACGTTCAAGGCCGTCGATTTTGATGGGCCTTTGGTGCTCTAGCGAGCGGTTCGGCTGGCTGCGCCAGCACCACCGTGGTATGGTTAGAACCGCGAACCCCAAGTGATGTTTACTGTACCAAGAGGTTCGCGCGCTTCGTAACCCGTTGTTTTGAAACACTTTATATTTTTTAGAGACTTTCCACTTTTGCAAACGCATGCCTTCATCATCAGGTTCGCGGAAATGCTCAAAAAAATTGTGAGCCGACAAGGCCTTGGACTCGAAGC # Right flank : | # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTCGCCCGCCAGCAATGGCGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCATCGCCCGTCAGTAATGGCGGGCGTGGATTGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-18.20,-17.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.42,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 27-3711 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSYM01000009.1 Rhodoferax antarcticus ANT.BR grfa_new.contig.8_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 27 37 100.0 34 ..................................... ACATTCGGCTCGCAGGAGTGAGCAAAAGGCAATC 98 37 100.0 33 ..................................... CCTGTGCTGACCAGTGCGGTGGTGGCGACTACT 168 37 100.0 34 ..................................... ACGCCCTTGCGCCAATGATGGGCCATTGCGCCGA 239 37 100.0 34 ..................................... CAGATACCGCCCCTCGCTGATCGCAATCGCCGGC 310 37 100.0 33 ..................................... AGGCGGGGGACATTCAAGGCAAGATGTGCGGGT 380 37 100.0 34 ..................................... CAGCTTTCCGGCGCGCCTGCCACCGCCATATCTC 451 37 100.0 35 ..................................... ACCCGGCGCTCACTGTGGCGGCGCACGGTGCCTTC 523 37 100.0 36 ..................................... CGCCGGAACAATGCCCCGGTCGAGCAGCGCCTCGAG 596 37 100.0 34 ..................................... AGAAAACACCCAGTAGCCGCCCGGCTGACGCAAC 667 37 100.0 35 ..................................... CCGTCCTACGCCTTGACCAATAACAACGCCAATAT 739 37 100.0 36 ..................................... GACCACGTCTGGCCCGCGACTGCCACGGCAAATCAC G [765] 813 35 91.9 32 ........-..............-...........C. ATGTAGTTCTGCCGCCCACACACCGCCGAGCA 880 37 97.3 35 C.................................... TCCTTGGTAATTTTGGAAGTGGATAGGTTGACCCC 952 37 100.0 39 ..................................... GGCACTACAATCGACTGGCGCTGCGTGAAGTGCACTGAT 1028 37 100.0 34 ..................................... ATCCTGGCCATGGATGATGCGTTGGCTGCTACCA 1099 37 100.0 34 ..................................... AGTCGCATGATGGGTGTCGAGGGCTCAAAATCCG C,G [1108,1124] 1172 37 100.0 35 ..................................... ACTTGTGTAGCCAGGTTGTCTGGTAGACAGCAGGT 1244 37 100.0 34 ..................................... GGCGTTACAGAAACCAATCTTTGGGCGGGGCATC 1315 37 100.0 34 ..................................... TCAATCGTCTTGGAGTACTAACATGATGCATTAC 1386 37 100.0 35 ..................................... GTCCGTATGCCATCTGCCCCACCAGGCATCCGCAA 1458 37 100.0 34 ..................................... ACATTCGGCTCGCAGGAGTGAGCAAAAGGCAATC 1529 37 100.0 33 ..................................... CCTGTGCTGACCAGTGCGGTGGTGGCGACTACT 1599 37 100.0 34 ..................................... ACGCCCTTGCGCCAATGATGGGCCATTGCGCCGA 1670 37 100.0 34 ..................................... CAGATACCGCCCCTCGCTGATCGCAATCGCCGGC 1741 37 100.0 35 ..................................... AGGCGGGGGGGACATTCAAGGCAAGATGTGCGGGT 1813 37 100.0 34 ..................................... CAGCTTTCCGGCGCGCCTGCCACCGCCATATCTC 1884 37 100.0 35 ..................................... ACCCGGCGCTCACTGTGGCGGCGCACGGTGCCTTC 1956 37 100.0 36 ..................................... CGCCGGAACAATGCCCCGGTCGAGCAGCGCCTCGAG 2029 37 100.0 34 ..................................... AGAAAACACCCAGTAGCCGCCCGGCTGACGCAAC 2100 37 100.0 35 ..................................... CCGTCCTACGCCTTGACCAATAACAACGCCAATAT 2172 37 100.0 34 ..................................... ACCACGTCTGCCCGCACTGCCACGGCAAAATCAC 2243 37 100.0 34 ..................................... CATGTAGTTCTTGCCGCCCACACACCGCCGAGCA 2314 37 97.3 35 C.................................... TCCTTGTAATTTTGGTAAGTGGATAGGTTGACCCC 2386 37 100.0 34 ..................................... AGGCAGGGCCAACTGCGCGCCGTGGCGGCCGGTG 2457 37 100.0 34 ..................................... ATCTGGATGCTCCTTTATTGTCGGTTTCGGTCAA 2528 37 100.0 35 ..................................... ATAATGCCGCCGCCTGCACAAACAGCGCATCAGTG 2600 37 100.0 35 ..................................... ATGGCATCGCTCTCGACATGGGACGTATTTGGGCA 2672 37 100.0 35 ..................................... ACGCTGGATTTGTTTGAGGAAGCACCGGCCACCAG 2744 37 100.0 34 ..................................... AACTGCATGGCCGAAGGCCATCCAGCATTGAGGC 2815 37 100.0 34 ..................................... GGCCTTCGGGCTGTTTTGCCCCCCAAACCTTGCT 2886 37 100.0 34 ..................................... TTCGTTGCCATTCCTTAACCTCCAAGTAAGGCGC 2957 37 100.0 35 ..................................... TTGTTCACGAACGCCGTGGCGTAAGGGGAAGCGCT 3029 37 97.3 34 G.................................... AAACCAAATCAACCTCTAGACCTTGAGGAACAAT 3100 37 97.3 34 G.................................... CAACACACCATGACACCAGCGCAAGCCCTGGACA 3171 37 97.3 34 G.................................... TTGCCACTGCGTTGTCGCGTTGCGGGGGTCGTAC 3242 37 97.3 35 G.................................... AGGCCAAACACCAGCGCATCGTCCCAGCCGCGCAT 3314 37 91.9 38 G...................A...........A.... ACCAGCGCCGTGGCAGACTCAAGAAGCGCGCTACGGGG 3389 37 97.3 34 G.................................... ATCGCGAAGCCGTTGTAATAAACAGTGCGACCCT 3460 37 89.2 35 G.........................GT........A ACCCTGACGCTGGCTGACGGGCTGCCCGTTGAGGC 3532 37 97.3 35 G.................................... CGCATTACATCAAGTGCGAGCCGTCGCTGTTTCAC 3604 37 94.6 34 G...................................T TTAAAACCCTTGGAGTAAATGCACCATGACCCAC 3675 37 97.3 0 G.................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 52 37 98.9 35 AGTTCGCCCGCCAGCAATGGCGGGCGCGGATTGAAAC # Left flank : GCCATCTGCCCACCAGGCATCCGCAAA # Right flank : CCACCTATGACGTGCCCATTGGCAAGTGGGTTGACGGGTTCGCCCGCCAGCAATGCTCTAAACCAGTTTCTTCAACAGCTCAACCTTCTTGCCGTCAAACTCTTGCTGCGTCAGGATGCCTTTGGCCTTGAGTTCGCCGAGTCTTTCCAGCGTGGCAATCACGTCTTCGGGCTTGACCTCGGCCACAGCCGCTAGCGGTGCCGCGGCACTGGTGGCAGAGGCCTGCAACCCGGCGGTCAGGTTTTGCGCCATCACTTGGCCCAGCGCCACACCCGCGCCCAGGCCCATCGCATCACCGGCGATGCCGCTACCGCCACCACCGCCACCTGCCCCGCCTTCGGCGAATTTTGGGATGGCCTGCGCGGTTTGGTACTGCATGAACTTGCCCATGTCGTTGCCGACCATACCCATGCCGATTTTCTGGTCGAGTACTTTTTGCAGGTCTTCAGGCAGCGAGACGTTTTGTACCGTCATGCCTTCGAGCTTGAGGCCGATTTTCT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTCGCCCGCCAGCAATGGCGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCATCGCCCGTCAGTAATGGCGGGCGTGGATTGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [36-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.74,0.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 794119-794852 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSYM01000013.1 Rhodoferax antarcticus ANT.BR grfa_new.contig.12_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 794119 37 100.0 31 ..................................... ATAGATTTCGTTTTGAGTTCATCAGGTACAG 794187 37 100.0 32 ..................................... TGCGCTGCTGCTGCGCGTTCTTTGCGTATCGC 794256 37 100.0 34 ..................................... GGCAGTTTCGAGTTCATCGTTCTTTTTATCCAAC 794327 37 100.0 31 ..................................... CCGAAGTCGCCTCTTGATGCTCACCCGCGCC 794395 37 100.0 33 ..................................... TTTTTGCCCTCATAGGTTTCGATGTGAATCTCG 794465 37 100.0 34 ..................................... GTCCAACATAGCGACAATGTCGCCGCGTCCGATA 794536 37 100.0 34 ..................................... ATACCTGCCTGAATCAGTGCGTTTTCCGCCGTAC 794607 37 100.0 33 ..................................... CTCTGAAGACTGTTCAGCTCGTACTGCTGTTTC 794677 37 100.0 33 ..................................... CATCACAAAGTCATACACCACGATAGGGCGCAG 794747 37 100.0 32 ..................................... AGCACCAACAAACGCAGAATCTTGCTGCTCCT 794816 37 94.6 0 ............C..................G..... | ========== ====== ====== ====== ===================================== ================================== ================== 11 37 99.5 33 GAACGAATACCAGCCCTGAATTCAAAGGGATTAAGAC # Left flank : CGCCGCAGGGGCCGCCGCCGTAACAGCCTTGTTTGAACGCTGGACCGCACGCAACGCCAGCGCGCTCACCGTGCACCTGGCCTGCCTGCACCGCACAGCCCTGAAAGCCATGCACCAATGAGCCAACACGCCACCGCGCAATGGCTGGTCACCTACGACATTGCCGACCCACGCCGGCTAAGCCGTTTGTTTAAGTACCTGAAAAAAAACGGAGTGCCCGTGCAATATTCAGTATTTCTGGTGGAAGCATCCGCAATCAGAATGGCGGCAATGATGGTGCAGATCGACAGCATCATCCACCCACAAGCTGACGACGTGCGGGCCTACTGCCTGCCCGACACCCTGTGGCAGGCGACGCTGGGCAAGAGCATCCTGCCCGCGGACACCCTGCCGGGCAATGACTTTTTGCTGCGATGAAATCACTGGCCATCACACCATGTCGGAAAACCGGCAAGTAGCAACGGAAGTGCTTGATACACTTGCGTTTTTCCGACAATGCG # Right flank : CCCGTCTTCAACCGCGCCTACGTCCCCGATGTGACCACCAAGGGCTAACCCGTAGCCGGGTAGCAGCCGCAGCTTTCTACAATAAAAGCACGTTCGTTCTTTTTGAAATTGGAGGCATCCATGTCCGTTGACTACACCGTGCAGGGCCAAGTGGCCGTGCTCACGCTGAACAACCCGCCGGTGAACGGTCTGGGCCTGGCCACACGGGTGGCGTTGACTAACGGCCTGGCGCGGGCGCTGGCAGATGAGGCGGTGGTTGCTATCGTTATTTCCGGGGCGGGCAGGGCGTTTTCTGGCGGGGCCGATATCACCGAATTTGGCTCGCCCAAGGCGTTTCAGGAGCCTAACTTGCTGAGCGTGATTTTGGCCGTGGAAGCTGCCACCAAGCCGCTGATTGCCGCCGTGCACAGCGTGTGCATGGGTGGCGGGCTGGAGCTGGCGCTGGGTTGCCATTACCGCATCGCCGCGCCGGGTTGCCAGGTGGCGCTGCCCGAAGTCAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAACGAATACCAGCCCTGAATTCAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //